>CFD143 (CFD143Q) /CSM/CF/CFD1-B/CFD143Q.Seq.d/
AAATAAAAGTATTATCAATTGATAATATTAGGCGCACTCTTATTATACATTTTCACAGTA
CGATATTACACTAGGTATAGATAGAGATAATCATATATTCATTCGATCTCTTAATATATA
TTTTCAAAATAACATAAAATAAAAATAAAAATAAAAATAAAAATAAAAATAATGAAATCA
ATAATATCAAATATAAATAATATAGATAATAATCATTTAGCAGGAGGTGCATTAGCATTA
TGGTTTATATTAAATATTAGTACATTAATATTAAATAAATATATTTATTCATCATTGTAT
TTCTATTATCCTATAACATTGACGGCGATACATATGTTTGTATGTTGGATTGGAAGTGTG
GCAGTATTGCGAGTATATAAATTGATACCATTGATAACGGTACAATGGAGTGGTAAACAA
TTTATAAATATAATGATTCTATCGATTTTATTTTGCTCAAATATTGTATTTGGAAATGTT
TCATTACGTTGGGTTCCAGTATCGTTTATGCAAACTGTAAAGAGTTCAGTACCATTGTTT
ACTGTTATCTTGACTACATTATTCTTTAGTAATATTGGTGGAAAGAAAACAACATTCACT
CGTGGCACTTATTTATCGATGATTCCAATCGTTGGTGXXXXXXXXXXATATGTCCCCAAT
ATCNTGTTGTCTCCTCTTCCCTTTGAGCGCTTTCATGGAATGGAATGCTATCGCAAATGA
ATGGCCACTCTATGGCGAGAGTAAACCAATCGTCATTCTATTACTATCGGGTTTAATTGC
TTTCCTTTTAAATACTTTCACCTTTTTAGTCATTAAATTAACTTCACCTTTAACCTACAC
CGTATCTGGTAATCTTAAAGTGGTCCTAAGTATTTCAATCTCAATTTTAGTCTTTAAAAA
TGAAACAAACTTTTTCAATGTTTTAGGTTGTGCCATAGCTATCATGGGTGTAGTTTGTTA
TAGTAACATTAAATATGAAGAATCAAAAGCAAAATTAGAACAACAACAACAACAATCTTT
AAAACAATTAGAATCAATTTATGAAGAGAAATTAGNATAAAG

k*kyyqliilgalllyiftvryytryr*r*syihsis*yifsk*HKIKIKIKIKIKIMKS
IISNINNIDNNHLAGGALALWFILNISTLILNKYIYSSLYFYYPITLTAIHMFVCWIGSV
AVLRVYKLIPLITVQWSGKQFINIMILSILFCSNIVFGNVSLRWVPVSFMQTVKSSVPLF
TVILTTLFFSNIGGKKTTFTRGTYLSMIPIVG---

---MSPISCCLLFPLSAFMEWNAIANEWPLYGESKPIVILLLSGLIAFLLNTFTFLVIKL
TSPLTYTVSGNLKVVLSISISILVFKNETNFFNVLGCAIAIMGVVCYSNIKYEESKAKLE
QQQQQSLKQLESIYEEKLX*

Frame A:
k*kyyqliilgalllyiftvryytryr*r*syihsis*yifsk*HKIKIKIKIKIKIMKS
IISNINNIDNNHLAGGALALWFILNISTLILNKYIYSSLYFYYPITLTAIHMFVCWIGSV
AVLRVYKLIPLITVQWSGKQFINIMILSILFCSNIVFGNVSLRWVPVSFMQTVKSSVPLF
TVILTTLFFSNIGGKKTTFTRGTYLSMIPIVG---

---icpqyxvvsssl*alswngmlsqmnghsmarvnqssfyyyrv*llsf*ilspf*sln
*lhl*ptpylvilkws*vfqsqf*slkmkqtfsmf*vvp*lswv*fvivtlnmknqkqn*
nnnnnnl*nn*nqfmkrn*xk

Frame B:
nksiin**y*ahsyytfsqyditlgidrdnhifirslniyfqnnik*k*k*k*k*k**nq
*yqi*ii*iiii*qevh*hygly*ilvh*y*inifihhcisiil*h*rryiclyvglevw
qyceyin*yh**ryngvvnnl*i**fyrfyfaqilylemfhyvgfqyrlckl*rvqyhcl
lls*lhyslvilverkqhslvaliyr*fqslv---

---yvpnixlsplpferfhgmecyrk*matlwre*tnrhsitigfncfpfkyfhlfsh*i
nftfnlhriw*s*sgpkyfnlnfsl*k*nklfqcfrlchsyhgcsll**h*i*rikskir
tttttifktirinl*reixik

Frame C:
ikvlsidnirrtliihfhstilh*v*ieiiiysfdlliyifkit*nknknknknknnein
nikyk*yr**sfsrrcisimvyiky*yinik*iylfiivfllsynidgdtyvcmldwkcg
siasi*idtidngtmew*tiykyndsidfillkyciwkcfitlgssivyanckefstivy
cyldyiil**ywwkennihswhlfiddsnrw---

---MSPISCCLLFPLSAFMEWNAIANEWPLYGESKPIVILLLSGLIAFLLNTFTFLVIKL
TSPLTYTVSGNLKVVLSISISILVFKNETNFFNVLGCAIAIMGVVCYSNIKYEESKAKLE
QQQQQSLKQLESIYEEKLX*

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFD143 (CFD143Q) /CSM/CF/CFD1-B/CFD143Q.Seq.d/                       1491   0.0
SFL387 (SFL387Q) /CSM/SF/SFL3-D/SFL387Q.Seq.d/                        833   0.0
CHA607 (CHA607Q) /CSM/CH/CHA6-A/CHA607Q.Seq.d/                        833   0.0
CFH204 (CFH204Q) /CSM/CF/CFH2-A/CFH204Q.Seq.d/                        833   0.0
CFG148 (CFG148Q) /CSM/CF/CFG1-B/CFG148Q.Seq.d/                        833   0.0
CFG411 (CFG411Q) /CSM/CF/CFG4-A/CFG411Q.Seq.d/                        827   0.0
CFF266 (CFF266Q) /CSM/CF/CFF2-C/CFF266Q.Seq.d/                        825   0.0
CFA141 (CFA141Q) /CSM/CF/CFA1-B/CFA141Q.Seq.d/                        825   0.0
SFK342 (SFK342Q) /CSM/SF/SFK3-B/SFK342Q.Seq.d/                        817   0.0
CFH255 (CFH255Q) /CSM/CF/CFH2-C/CFH255Q.Seq.d/                        815   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           38   8e-07  17
AE014847|AE014847.1 Plasmodium falciparum 3D7 chromosome 12, section 4 of 9 of the complete sequence.    32   2e-06  17
AE014830|AE014830.1 Plasmodium falciparum 3D7 chromosome 10 section 2 of 7 of the complete sequence.    38   4e-06  13
AL929357|AL929357.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 3/5.    32   2e-05  18
AE014833|AE014833.1 Plasmodium falciparum 3D7 chromosome 10 section 5 of 7 of the complete sequence.    34   2e-05  17
AC004709|AC004709.3 Plasmodium falciparum chromosome 12, WORKING DRAFT SEQUENCE, 3 unordered pieces.    32   3e-05  15
AC004710|AC004710.3 Plasmodium falciparum chromosome 12, WORKING DRAFT SEQUENCE, 2 unordered pieces.    38   4e-05  12
AE015943|AE015943.1 Clostridium tetani E88, section 8 of 10 of the complete genome.    36   4e-05  15
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.            44   6e-05  21
AX392734|AX392734.1 Sequence 24 from Patent WO0212526.             36   8e-05  11

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FB803800_1(FB803800|pid:none) Sequence 23073 from Patent WO20080...   105   3e-21
AM481310_3(AM481310|pid:none) Vitis vinifera contig VV78X248272....   104   4e-21
FB888588_1(FB888588|pid:none) Sequence 107861 from Patent WO2008...   103   8e-21
FB803930_1(FB803930|pid:none) Sequence 23203 from Patent WO20080...   103   8e-21
AK227871_1(AK227871|pid:none) Arabidopsis thaliana mRNA for hypo...   103   1e-20
FB888592_1(FB888592|pid:none) Sequence 107865 from Patent WO2008...   103   1e-20
EF145646_1(EF145646|pid:none) Populus trichocarpa clone WS0112_E...   103   1e-20
AC149472_18(AC149472|pid:none) Medicago truncatula clone mth2-77...   103   1e-20
BT014979_1(BT014979|pid:none) Arabidopsis thaliana At5g05820 gen...   102   2e-20
AB005237_23(AB005237|pid:none) Arabidopsis thaliana genomic DNA,...   102   2e-20

 psg: 0.74  gvh: 0.54  alm: 0.21  top: 0.57  tms: 0.53  mit: 0.28  mip: 0.25
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 56.0 %: plasma membrane
	 24.0 %: endoplasmic reticulum
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: cytoplasmic
	  4.0 %: nuclear

>> prediction for CFD143 is pla

>CFD143F.Seq
AAATAAAAGTATTATCAATTGATAATATTAGGCGCACTCTTATTATACATTTTCACAGTA
CGATATTACACTAGGTATAGATAGAGATAATCATATATTCATTCGATCTCTTAATATATA
TTTTCAAAATAACATAAAATAAAAATAAAAATAAAAATAAAAATAAAAATAATGAAATCA
ATAATATCAAATATAAATAATATAGATAATAATCATTTAGCAGGAGGTGCATTAGCATTA
TGGTTTATATTAAATATTAGTACATTAATATTAAATAAATATATTTATTCATCATTGTAT
TTCTATTATCCTATAACATTGACGGCGATACATATGTTTGTATGTTGGATTGGAAGTGTG
GCAGTATTGCGAGTATATAAATTGATACCATTGATAACGGTACAATGGAGTGGTAAACAA
TTTATAAATATAATGATTCTATCGATTTTATTTTGCTCAAATATTGTATTTGGAAATGTT
TCATTACGTTGGGTTCCAGTATCGTTTATGCAAACTGTAAAGAGTTCAGTACCATTGTTT
ACTGTTATCTTGACTACATTATTCTTTAGTAATATTGGTGGAAAGAAAACAACATTCACT
CGTGGCACTTATTTATCGATGATTCCAATCGTTGGTG----------

>CFD143Z.Seq
----------ATATGTCCCCAATATCNTGTTGTCTCCTCTTCCCTTTGAGCGCTTTCATG
GAATGGAATGCTATCGCAAATGAATGGCCACTCTATGGCGAGAGTAAACCAATCGTCATT
CTATTACTATCGGGTTTAATTGCTTTCCTTTTAAATACTTTCACCTTTTTAGTCATTAAA
TTAACTTCACCTTTAACCTACACCGTATCTGGTAATCTTAAAGTGGTCCTAAGTATTTCA
ATCTCAATTTTAGTCTTTAAAAATGAAACAAACTTTTTCAATGTTTTAGGTTGTGCCATA
GCTATCATGGGTGTAGTTTGTTATAGTAACATTAAATATGAAGAATCAAAAGCAAAATTA
GAACAACAACAACAACAATCTTTAAAACAATTAGAATCAATTTATGAAGAGAAATTAGNA
TAAAG

>CFD143P.Seq
AAATAAAAGTATTATCAATTGATAATATTAGGCGCACTCTTATTATACATTTTCACAGTA
CGATATTACACTAGGTATAGATAGAGATAATCATATATTCATTCGATCTCTTAATATATA
TTTTCAAAATAACATAAAATAAAAATAAAAATAAAAATAAAAATAAAAATAATGAAATCA
ATAATATCAAATATAAATAATATAGATAATAATCATTTAGCAGGAGGTGCATTAGCATTA
TGGTTTATATTAAATATTAGTACATTAATATTAAATAAATATATTTATTCATCATTGTAT
TTCTATTATCCTATAACATTGACGGCGATACATATGTTTGTATGTTGGATTGGAAGTGTG
GCAGTATTGCGAGTATATAAATTGATACCATTGATAACGGTACAATGGAGTGGTAAACAA
TTTATAAATATAATGATTCTATCGATTTTATTTTGCTCAAATATTGTATTTGGAAATGTT
TCATTACGTTGGGTTCCAGTATCGTTTATGCAAACTGTAAAGAGTTCAGTACCATTGTTT
ACTGTTATCTTGACTACATTATTCTTTAGTAATATTGGTGGAAAGAAAACAACATTCACT
CGTGGCACTTATTTATCGATGATTCCAATCGTTGGTG----------ATATGTCCCCAAT
ATCNTGTTGTCTCCTCTTCCCTTTGAGCGCTTTCATGGAATGGAATGCTATCGCAAATGA
ATGGCCACTCTATGGCGAGAGTAAACCAATCGTCATTCTATTACTATCGGGTTTAATTGC
TTTCCTTTTAAATACTTTCACCTTTTTAGTCATTAAATTAACTTCACCTTTAACCTACAC
CGTATCTGGTAATCTTAAAGTGGTCCTAAGTATTTCAATCTCAATTTTAGTCTTTAAAAA
TGAAACAAACTTTTTCAATGTTTTAGGTTGTGCCATAGCTATCATGGGTGTAGTTTGTTA
TAGTAACATTAAATATGAAGAATCAAAAGCAAAATTAGAACAACAACAACAACAATCTTT
AAAACAATTAGAATCAATTTATGAAGAGAAATTAGNATAAAG