>CFD139 (CFD139Q) /CSM/CF/CFD1-B/CFD139Q.Seq.d/
XXXXXXXXXXCAATTTCAATTGAGTCTGCAAAAGATTNATATCTTTGGTTTGGTACTTTT
GAATNATTGGAGTGCAAGAGATATCCAAAAATGGGAATACGTTCCATTGGGTCCATTCTT
GGCAAAGAATTTCGGCTCAACTATATCACCATGGGTTGTTACAATGGAGGCATTGCAACC
CATTTGCTACAAAACCACCAACTCAAGATCCACAACCAATGAAATATCTTCAAGAACAAG
GTAATACTACCTTTGATATTGAATTATCAGTTAGTATTAAATCTCCAAAAATGTCAAAAC
CTCATAAGGTTTCAACTTCAAATTTGAAATACATGTATTGGACACTCACTCAACAATTGG
CTCATCATACTGTAAATGGTTGTAATATGAATGCTGGTGATTTACTTGGTACTGGTACAA
TTAGTGGTCCAACTGAAGATAGCTATGGTTCAATGTTGGAACTCTCTTGGAAAGGTAGTA
AAGTGGTCTCATTAGGTACTGAAACAAATGAAGAAAGAAAATTCATTCAAGATGGTGATT
CTGTTATCTTATCTGGNCTTTGTAAAGGTAATGGTTATCAAATTGGTTNTGGTAATTGTG
AAGGTACAATTTTACCAGCTGATAAACGTCAAAAAAAAAAATTAATTAAATAAATAAA

---nfn*vckrxislvwyf*XIGVQEISKNGNTFHWVHSWQRISAQLYHHGLLQWRHCNP
FATKPPTQDPQPMKYLQEQGNTTFDIELSVSIKSPKMSKPHKVSTSNLKYMYWTLTQQLA
HHTVNGCNMNAGDLLGTGTISGPTEDSYGSMLELSWKGSKVVSLGTETNEERKFIQDGDS
VILSGLCKGNGYQIGXGNCEGTILPADKRQKKKLIK*i

Frame A:
---nfn*vckrxislvwyf*XIGVQEISKNGNTFHWVHSWQRISAQLYHHGLLQWRHCNP
FATKPPTQDPQPMKYLQEQGNTTFDIELSVSIKSPKMSKPHKVSTSNLKYMYWTLTQQLA
HHTVNGCNMNAGDLLGTGTISGPTEDSYGSMLELSWKGSKVVSLGTETNEERKFIQDGDS
VILSGLCKGNGYQIGXGNCEGTILPADKRQKKKLIK*i


Frame B:
---isiesakdxylwfgtfexleckrypkmgirsigsilgkefrlnyitmgcynggiath
llqnhqlkihnq*nifknkvilplilnyqlvlnlqkcqnlirfqlqi*ntcighslnnwl
iil*mvvi*mlviylvlvqlvvqlkiamvqcwnslgkvvkwsh*vlkqmkkensfkmvil
lsylxfvkvmviklvxvivkvqfyqlinvkkkn*lnk*


Frame C:
---fqlslqkixifglvllnxwsardiqkweyvplgpflaknfgstispwvvtmealqpi
cykttnsrsttneissrtr*yyl*y*iis*y*isknvkts*gfnfkfeihvldthstigs
syckwl*yecw*ftwywyn*wsn*r*lwfnvgtller**sgliry*nk*rkkihsrw*fc
yliwxl*r*wlsnwxw*l*rynfts**tskkkin*ink

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFD139 (CFD139Q) /CSM/CF/CFD1-B/CFD139Q.Seq.d/                       1205   0.0
VFL795 (VFL795Q) /CSM/VF/VFL7-D/VFL795Q.Seq.d/                       1174   0.0
SFF638 (SFF638Q) /CSM/SF/SFF6-B/SFF638Q.Seq.d/                       1174   0.0
SFD819 (SFD819Q) /CSM/SF/SFD8-A/SFD819Q.Seq.d/                       1174   0.0
SFD588 (SFD588Q) /CSM/SF/SFD5-D/SFD588Q.Seq.d/                       1174   0.0
CHD537 (CHD537Q) /CSM/CH/CHD5-B/CHD537Q.Seq.d/                       1174   0.0
CHD530 (CHD530Q) /CSM/CH/CHD5-B/CHD530Q.Seq.d/                       1174   0.0
CHC122 (CHC122Q) /CSM/CH/CHC1-A/CHC122Q.Seq.d/                       1174   0.0
CFJ568 (CFJ568Q) /CSM/CF/CFJ5-C/CFJ568Q.Seq.d/                       1174   0.0
CFF515 (CFF515Q) /CSM/CF/CFF5-A/CFF515Q.Seq.d/                       1174   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BI504681|BI504681.1 BB170011A20F01.5 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170011A20F01 5', mRNA sequence.    64   4e-08  2
BW129032|BW129032.1 Ciona intestinalis cDNA, clone:rcign001a22, 3' end, single read.    50   3e-06  3
BW075982|BW075982.1 Ciona intestinalis cDNA, clone:rcieg067n18, 3' end, single read.    48   9e-06  3
AV888124|AV888124.1 Ciona intestinalis cDNA, clone:rcicl27h05, 3' end, single read.    48   9e-06  3
BP018255|BP018255.1 Ciona intestinalis cDNA, clone:ciad79b21, 5' end, single read.    48   9e-06  3
AV908542|AV908542.1 Ciona intestinalis cDNA, clone:rciad79b21, 3' end, single read.    48   1e-05  3
BW107641|BW107641.1 Ciona intestinalis cDNA, clone:rcicl063i03, 3' end, single read.    48   1e-05  3
AV848436|AV848436.1 Ciona intestinalis cDNA, clone:rciad12d12, 3' end, single read.    48   1e-05  3
BW267098|BW267098.1 Ciona intestinalis cDNA, clone:cign046f18, 5' end, single read.    48   1e-05  3
AV886238|AV886238.1 Ciona intestinalis cDNA, clone:rcicl44g18, 3' end, single read.    48   1e-05  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q1ZXQ1) RecName: Full=Fumarylacetoacetase;          Short=FAA; ...   312   e-107
BT078080_1(BT078080|pid:none) Lepeophtheirus salmonis clone lsal...   182   1e-64
AY891819_1(AY891819|pid:none) Synthetic construct Homo sapiens c...   178   2e-63
(P16930) RecName: Full=Fumarylacetoacetase;          Short=FAA; ...   178   2e-63
BC157696_1(BC157696|pid:none) Xenopus tropicalis hypothetical pr...   175   3e-63
(A5PKH3) RecName: Full=Fumarylacetoacetase;          Short=FAA; ...   177   4e-63
BT074744_1(BT074744|pid:none) Osmerus mordax clone omor-rgc-510-...   173   3e-62
T25813(T25813) hypothetical protein K10C2.4 - Caenorhabditis ele...   174   2e-61
AM398681_665(AM398681|pid:none) Flavobacterium psychrophilum JIP...   166   3e-61
CP000159_2302(CP000159|pid:none) Salinibacter ruber DSM 13855, c...   178   3e-61

 psg: 0.82  gvh: 0.41  alm: 0.53  top: 0.53  tms: 0.00  mit: 0.32  mip: 0.07
 nuc: 0.03  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: vacuolar
	  8.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for CFD139 is nuc

>CFD139Z.Seq
----------CAATTTCAATTGAGTCTGCAAAAGATTNATATCTTTGGTTTGGTACTTTT
GAATNATTGGAGTGCAAGAGATATCCAAAAATGGGAATACGTTCCATTGGGTCCATTCTT
GGCAAAGAATTTCGGCTCAACTATATCACCATGGGTTGTTACAATGGAGGCATTGCAACC
CATTTGCTACAAAACCACCAACTCAAGATCCACAACCAATGAAATATCTTCAAGAACAAG
GTAATACTACCTTTGATATTGAATTATCAGTTAGTATTAAATCTCCAAAAATGTCAAAAC
CTCATAAGGTTTCAACTTCAAATTTGAAATACATGTATTGGACACTCACTCAACAATTGG
CTCATCATACTGTAAATGGTTGTAATATGAATGCTGGTGATTTACTTGGTACTGGTACAA
TTAGTGGTCCAACTGAAGATAGCTATGGTTCAATGTTGGAACTCTCTTGGAAAGGTAGTA
AAGTGGTCTCATTAGGTACTGAAACAAATGAAGAAAGAAAATTCATTCAAGATGGTGATT
CTGTTATCTTATCTGGNCTTTGTAAAGGTAATGGTTATCAAATTGGTTNTGGTAATTGTG
AAGGTACAATTTTACCAGCTGATAAACGTCAAAAAAAAAAATTAATTAAATAAATAAA