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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFD134
Library CF
(Link to library)
Clone ID CFD134
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16241-1
Original site URL
Representative seq. ID CFD134P
(Link to Original site)
Representative DNA sequence 
>CFD134 (CFD134Q) /CSM/CF/CFD1-B/CFD134Q.Seq.d/
ATTGCAATTGTTTCCCAAAATTACACACACCACAAAAATAAAAGAGATAAGAAAAACAGA
AAAAATAAAAAATAAAAAAAACTCTATATAAAATTCTTATTTATATATAAATAAAACAAA
AGTAAAAAAAAGAATGTTTCCCATTTCAGTAGGGTGGATAGCATTTGCAGGTGTTCTTCT
CACGTTAATTGCATTAAATTATTTTATAGTTAAATATTACTCAGATAAACATGAAAGTGG
AAAAATTACAACAATCATTTCAGTAATTGGACTTACATTAACACTTTTATGTGTTATGCT
TATTCCAGTTGATATTTTAAATGTTTCAACAATGTCACATAGTGATGGTACACAAATTTC
ACCATATTCAATCTCTCAAAGAACTGAAGGTGTTAAAATGTTATATTATATATTATATGG
ATCAATTTTAGGAGTTTCACTAATTTTAGCACCATTTGCATATTTTTATCATGAAGAATA
TGATGAAAATATTCCAACATGTTCAAGAGTTTATGCAGGATGTAAATTTACAATATTTTT
CATATTGTTTACAATTATATTATTGGTTGTTGGTGCATTTGTTAGACCAGGATCTAAACC
AATCGATGATCAAAAXXXXXXXXXXAAAATCCATTCGATATCATTCTCACCAAATTGGCC
CCATATTTCCCATTGGATTATATCATTATTGGTGGTTTAATATTTTTCATTTATTCTTGT
ACTTTATCTGGTATCACTAGANTNGGTATTAGATTTTTATGGATTAATATGTTTGAATTT
GGATATCGTAAAACTTTCCCACAAGGTTTATTACTTGCATCAGTGTTATTAATGTTAAGT
AATTTATGTTTAAATATGCAAATTGTAAATTTAGCACCAAGATATGTTATGTATGGTGCT
CAAGTCTATTTGAATGGNACTTCAGTTATACCATGTACAATTAATGCACCAACAGATNCT
TTGTATTATGTCAGAAATTGGTCTTTTAACTTCACGTATTACAATTAGGTATTTACTTTN
CTTTGGTATTGTATTTTATTATGGTACCTGGGTAATTGTTGCAACTTTTATTTTAGGTTT
AGCTGTTTCAATATTTAAAAGAAGACCA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
lqlfpkithttkikeirktekiknkknsi*NSYLYINKTKVKKRMFPISVGWIAFAGVLL
TLIALNYFIVKYYSDKHESGKITTIISVIGLTLTLLCVMLIPVDILNVSTMSHSDGTQIS
PYSISQRTEGVKMLYYILYGSILGVSLILAPFAYFYHEEYDENIPTCSRVYAGCKFTIFF
ILFTIILLVVGAFVRPGSKPIDDQ---

---NPFDIILTKLAPYFPLDYIIIGGLIFFIYSCTLSGITRXGIRFLWINMFEFGYRKTF
PQGLLLASVLLMLSNLCLNMQIVNLAPRYVMYGAQVYLNGTSVIPCTINAPTDXLYYVRN
WSFNFTYYN*vftxlwycillwylgnccnfyfrfscfni*kkt
Translated Amino Acid sequence (All Frames) 
Frame A:
iaivsqnythhknkrdkknrknkk*kklyikflfiyk*nkskkknvshfsrvdsicrcss
hvnciklfys*illr*t*kwknynnhfsnwtyintfmcyayss*yfkcfnnvt**wytnf
tifnlskn*rc*nvilyiiwinfrsftnfsticifls*ri**kysnmfkslcrm*iynif
hivynyiigcwcic*tri*tnr*sk---

---kihsisfspnwphishwiisllvv*yfsfilvlylvslxxvldfygliclnldivkl
shkvyylhqcy*c*viyv*ickl*i*hqdmlcmvlksi*mxlqlyhvqlmhqqxlcimse
iglltsritiryllxfgivfyygtwvivatfilglavsifkrrp

Frame B:
lqlfpkithttkikeirktekiknkknsi*NSYLYINKTKVKKRMFPISVGWIAFAGVLL
TLIALNYFIVKYYSDKHESGKITTIISVIGLTLTLLCVMLIPVDILNVSTMSHSDGTQIS
PYSISQRTEGVKMLYYILYGSILGVSLILAPFAYFYHEEYDENIPTCSRVYAGCKFTIFF
ILFTIILLVVGAFVRPGSKPIDDQ---

---ksiryhshqigpifpiglyhywwfnifhlflyfiwyh*xxy*ifmd*yv*iwis*nf
ptrfitcisvinvk*fmfkyanckfstkicyvwcsslfewxfsytmyn*ctnrxfvlcqk
lvf*lhvlqlgiyfxlvlyfimvpg*llqllf*v*lfqylked

Frame C:
cncfpklhtpqk*kr*ekqkk*kikktlykiliyi*ikqk*kkecfpfq*gg*hlqvffs
r*lh*iil*lnitqinmkveklqqsfq*ldlh*hfyvlclfqlif*mfqqchivmvhkfh
hiqslkelkvlkcyiiyymdqf*efh*f*hhlhifimknmmkifqhvqefmqdvnlqyfs
yclqlyywllvhlldqdlnqsmik---

---NPFDIILTKLAPYFPLDYIIIGGLIFFIYSCTLSGITRXGIRFLWINMFEFGYRKTF
PQGLLLASVLLMLSNLCLNMQIVNLAPRYVMYGAQVYLNGTSVIPCTINAPTDXLYYVRN
WSFNFTYYN*vftxlwycillwylgnccnfyfrfscfni*kkt
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFD134 (CFD134Q) /CSM/CF/CFD1-B/CFD134Q.Seq.d/                       1848   0.0
VFA118 (VFA118Q) /CSM/VF/VFA1-A/VFA118Q.Seq.d/                        952   0.0
SFH228 (SFH228Q) /CSM/SF/SFH2-B/SFH228Q.Seq.d/                        952   0.0
SFD558 (SFD558Q) /CSM/SF/SFD5-C/SFD558Q.Seq.d/                        952   0.0
CHC568 (CHC568Q) /CSM/CH/CHC5-C/CHC568Q.Seq.d/                        952   0.0
CHB356 (CHB356Q) /CSM/CH/CHB3-C/CHB356Q.Seq.d/                        952   0.0
CFI671 (CFI671Q) /CSM/CF/CFI6-C/CFI671Q.Seq.d/                        952   0.0
CFI285 (CFI285Q) /CSM/CF/CFI2-D/CFI285Q.Seq.d/                        952   0.0
CFH203 (CFH203Q) /CSM/CF/CFH2-A/CFH203Q.Seq.d/                        952   0.0
CFG150 (CFG150Q) /CSM/CF/CFG1-C/CFG150Q.Seq.d/                        952   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AE014849|AE014849.1 Plasmodium falciparum 3D7 chromosome 12, section 6 of 9 of the complete sequence.    34   1e-07  17
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.           38   7e-07  24
AR409405|AR409405.1 Sequence 1 from patent US 6632935.             38   4e-06  21
BD061520|BD061520.1 Genome DNA of symbiotic bacteria of aphid.     38   4e-06  21
AX344565|AX344565.1 Sequence 16 from Patent WO0200932.             34   5e-06  14
AC005507|AC005507.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    34   1e-05  14
AL844505|AL844505.1 Plasmodium falciparum chromosome  6.           36   1e-05  19
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome.    34   2e-05  16
AE014826|AE014826.1 Plasmodium falciparum 3D7 chromosome 14 section 11 of 13 of the complete sequence.    36   5e-05  16
AE014850|AE014850.1 Plasmodium falciparum 3D7 chromosome 12, section 7 of 9 of the complete sequence.    36   5e-05  16
dna update 2004. 3. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54KD1) RecName: Full=Probable lysosomal cobalamin transporter;...   290   8e-77
(A7RM45) RecName: Full=Probable lysosomal cobalamin transporter;       87   8e-16
(Q5PR61) RecName: Full=Probable lysosomal cobalamin transporter;...    83   2e-14
CT025894_3(CT025894|pid:none) Zebrafish DNA sequence from clone ...    80   1e-13
(Q5ZI05) RecName: Full=Probable lysosomal cobalamin transporter;...    79   2e-13
(Q4R5E3) RecName: Full=Probable lysosomal cobalamin transporter;...    79   4e-13
(Q3SYY9) RecName: Full=Probable lysosomal cobalamin transporter;...    77   8e-13
(Q8K0B2) RecName: Full=Probable lysosomal cobalamin transporter;...    77   1e-12
AY093598_1(AY093598|pid:none) Rattus norvegicus p53-related prot...    75   3e-12
(Q0VGV9) RecName: Full=Probable lysosomal cobalamin transporter;...    73   2e-11
protein update 2009. 5.12
PSORT 

 psg: 0.58  gvh: 0.58  alm: 0.11  top: 0.23  tms: 0.40  mit: 0.33  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 36.0 %: endoplasmic reticulum
	 32.0 %: plasma membrane
	 20.0 %: mitochondrial
	  8.0 %: nuclear
	  4.0 %: Golgi

>> prediction for CFD134 is end
5' end seq. ID CFD134F
5' end seq. 
>CFD134F.Seq
ATTGCAATTGTTTCCCAAAATTACACACACCACAAAAATAAAAGAGATAAGAAAAACAGA
AAAAATAAAAAATAAAAAAAACTCTATATAAAATTCTTATTTATATATAAATAAAACAAA
AGTAAAAAAAAGAATGTTTCCCATTTCAGTAGGGTGGATAGCATTTGCAGGTGTTCTTCT
CACGTTAATTGCATTAAATTATTTTATAGTTAAATATTACTCAGATAAACATGAAAGTGG
AAAAATTACAACAATCATTTCAGTAATTGGACTTACATTAACACTTTTATGTGTTATGCT
TATTCCAGTTGATATTTTAAATGTTTCAACAATGTCACATAGTGATGGTACACAAATTTC
ACCATATTCAATCTCTCAAAGAACTGAAGGTGTTAAAATGTTATATTATATATTATATGG
ATCAATTTTAGGAGTTTCACTAATTTTAGCACCATTTGCATATTTTTATCATGAAGAATA
TGATGAAAATATTCCAACATGTTCAAGAGTTTATGCAGGATGTAAATTTACAATATTTTT
CATATTGTTTACAATTATATTATTGGTTGTTGGTGCATTTGTTAGACCAGGATCTAAACC
AATCGATGATCAAAA----------
Length of 5' end seq. 615
3' end seq. ID CFD134Z
3' end seq. 
>CFD134Z.Seq
----------AAAATCCATTCGATATCATTCTCACCAAATTGGCCCCATATTTCCCATTG
GATTATATCATTATTGGTGGTTTAATATTTTTCATTTATTCTTGTACTTTATCTGGTATC
ACTAGANTNGGTATTAGATTTTTATGGATTAATATGTTTGAATTTGGATATCGTAAAACT
TTCCCACAAGGTTTATTACTTGCATCAGTGTTATTAATGTTAAGTAATTTATGTTTAAAT
ATGCAAATTGTAAATTTAGCACCAAGATATGTTATGTATGGTGCTCAAGTCTATTTGAAT
GGNACTTCAGTTATACCATGTACAATTAATGCACCAACAGATNCTTTGTATTATGTCAGA
AATTGGTCTTTTAACTTCACGTATTACAATTAGGTATTTACTTTNCTTTGGTATTGTATT
TTATTATGGTACCTGGGTAATTGTTGCAACTTTTATTTTAGGTTTAGCTGTTTCAATATT
TAAAAGAAGACCA
Length of 3' end seq. 483
Connected seq. ID CFD134P
Connected seq. 
>CFD134P.Seq
ATTGCAATTGTTTCCCAAAATTACACACACCACAAAAATAAAAGAGATAAGAAAAACAGA
AAAAATAAAAAATAAAAAAAACTCTATATAAAATTCTTATTTATATATAAATAAAACAAA
AGTAAAAAAAAGAATGTTTCCCATTTCAGTAGGGTGGATAGCATTTGCAGGTGTTCTTCT
CACGTTAATTGCATTAAATTATTTTATAGTTAAATATTACTCAGATAAACATGAAAGTGG
AAAAATTACAACAATCATTTCAGTAATTGGACTTACATTAACACTTTTATGTGTTATGCT
TATTCCAGTTGATATTTTAAATGTTTCAACAATGTCACATAGTGATGGTACACAAATTTC
ACCATATTCAATCTCTCAAAGAACTGAAGGTGTTAAAATGTTATATTATATATTATATGG
ATCAATTTTAGGAGTTTCACTAATTTTAGCACCATTTGCATATTTTTATCATGAAGAATA
TGATGAAAATATTCCAACATGTTCAAGAGTTTATGCAGGATGTAAATTTACAATATTTTT
CATATTGTTTACAATTATATTATTGGTTGTTGGTGCATTTGTTAGACCAGGATCTAAACC
AATCGATGATCAAAA----------AAAATCCATTCGATATCATTCTCACCAAATTGGCC
CCATATTTCCCATTGGATTATATCATTATTGGTGGTTTAATATTTTTCATTTATTCTTGT
ACTTTATCTGGTATCACTAGANTNGGTATTAGATTTTTATGGATTAATATGTTTGAATTT
GGATATCGTAAAACTTTCCCACAAGGTTTATTACTTGCATCAGTGTTATTAATGTTAAGT
AATTTATGTTTAAATATGCAAATTGTAAATTTAGCACCAAGATATGTTATGTATGGTGCT
CAAGTCTATTTGAATGGNACTTCAGTTATACCATGTACAATTAATGCACCAACAGATNCT
TTGTATTATGTCAGAAATTGGTCTTTTAACTTCACGTATTACAATTAGGTATTTACTTTN
CTTTGGTATTGTATTTTATTATGGTACCTGGGTAATTGTTGCAACTTTTATTTTAGGTTT
AGCTGTTTCAATATTTAAAAGAAGACCA
Length of connected seq. 1098
Full length Seq ID -
Full length Seq. -
Length of full length seq. -