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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFD132
Library CF
(Link to library)
Clone ID CFD132
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CFD132P
(Link to Original site)
Representative DNA sequence 
>CFD132 (CFD132Q) /CSM/CF/CFD1-B/CFD132Q.Seq.d/
TTTACATATTAATTAATTATGCAAATTTTTGTTAAAACTCTCACTGGTAAAACCATCACA
TTGGAAGTTGAAGGTAGTGACAACATTGAAAATGTCAAGGCTAAAATTCAAGACAAAGAA
GGTATTCCACCAGATCAACAAAGATTAATCTTTGCTGGTAAACAATTAGAAGATGGTCGT
ACTCTTTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTTCTTAGATTAAGA
GGTGGTATGCAAATCTTTGTAAAAACTCTCACTGGTAAAACCATCACCTTAGAGGTTGAA
GGTAGTGATAACATTGAAAATGTTAAAGCTAAAATTCAAGACAAAGAAGGTATCCCACCA
GATCAACAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGAC
TACAACATTCAAAAGGAATCCACTCTCCACTTGGTTCTCAGATTAAGAGGTGGTATGCAA
ATCTTTGTAAAAACCTTGACTGGTAAAACTATCACCTTGGAAGTCGAAGGTTCTGACAAC
ATTGAAAATGTTAAAGCCAAAATCCAAGACAAAGAAGGTATCCCACCAGATCAACAAAGA
TTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGACTACAACATTCAA
AAAGAATCCACTCTCCATTTAGNTTTAAGATTACCANGNGGGATGCAAAATTTTTGTTAA
AACTCTACTGGTAAGACCATCACCTTAAAGGTGAANGTAGNGATACATTGNAAATGTCAA
GCCAAATTCCAGANAANAAGGGTTCCCCCNAATCACCAANATAATTTTCGCTGGTAAXXX
XXXXXXXANAAGAAGGNNANTACTCTCTCTGNNGNANCATGCANAAAAAATNCNCTCTGC
ATTTANTTTGANNTTAANAGGTGGTANNNNAATNTNTGTTCGAAACTACNAANNNGGTNA
AACCATNNCCTTGANAGTTCAAGGTAGTGATAACATTGAAAATGTNNAAGNCGANAGCCA
AGNCAAANAAGGTATTTCCNCCAGATCANCAANGTNTCATTTTCAGCTGGTAAACAATTA
GAAGATGGCNGTACTCTCTCTGATTGCAACATCCAAAAANAATCCACTCTNCATTTAGTT
CTCAGATTAANAGGTGGTATGCAAATCTTTGTAAAANCCNTGNNTGGTAAGACCATCACA
TTGGAAGTCGAAGGTTCTGATAACATTGAAAATGTCAAAGCCAAAATTCAAGACAAAGAA
GGTATTCCACCAGATCAACAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGT
ACTCTCTCTGACTACAATATTCAAAAGGAATCCACTCTCCATTTAGTTCTCAGATTAAGA
GGTGGTATGCAAATCTTTGTTAAAACTTTAACAGGTAAAACTATCACCTTGGAAGTCGAA
GGTAGTGATAACATTGAAAATGTTAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCA
GATCAACAACGTCTCATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTNCNCTGCTG
ATTACAACATTGCAAAAGGAATGCCACTNCTNCCATTTAGTTNCNCAGNNTNA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
lhin*lckfllklslvkpshwklkvvttlkmsrlkfktkkvfhqinkd*sllvnn*kmvv
lflittfkrnplsi*fld*evvcksl*klslvkpsp*rlkvvitlkmlklkfktkkvshq
inkd*fslvnn*kmvvlsltttfkrnplstwfsd*evvcksl*kp*lvklspwkskvltt
lkmlkpksktkkvshqinkd*fslvnn*kmvvlsltttfkknplsi*x*dyxxgckifvk
tllvrpsp*r*x*XYIXNVKPNSRXXGFPXITXIIFAG---

---XRRXXLSLXXHAXKXXSAFXLXLXGGXXXXVRNYXXGXTXXLXVQGSDNIENVXXXS
QXKXGISXRSXXXHFQLVNN*kmavlsliatskxnplxi*fsd*xvvcksl*xpxxvrps
hwkskvlitlkmskpkfktkkvfhqinkd*fslvnn*kmvvlslttifkrnplsi*fsd*
evvcksllkl*qvklspwkskvvitlkmlkpksktkkvfhqinnvsfslvnn*kmvvlxc
*lqhckrnatxxi*xxxx
Translated Amino Acid sequence (All Frames) 
Frame A:
fty*limqifvktltgktitlevegsdnienvkakiqdkegippdqqrlifagkqledgr
tlsdyniqkestlhlvlrlrggmqifvktltgktitlevegsdnienvkakiqdkegipp
dqqrlifagkqledgrtlsdyniqkestlhlvlrlrggmqifvktltgktitlevegsdn
ienvkakiqdkegippdqqrlifagkqledgrtlsdyniqkestlhlxlrlpxgmqnfc*
nstgktitlkvxvxihxkcqakfqxxrvppnhqxnfrw*---

---XRRXXLSLXXHAXKXXSAFXLXLXGGXXXXVRNYXXGXTXXLXVQGSDNIENVXXXS
QXKXGISXRSXXXHFQLVNN*kmavlsliatskxnplxi*fsd*xvvcksl*xpxxvrps
hwkskvlitlkmskpkfktkkvfhqinkd*fslvnn*kmvvlslttifkrnplsi*fsd*
evvcksllkl*qvklspwkskvvitlkmlkpksktkkvfhqinnvsfslvnn*kmvvlxc
*lqhckrnatxxi*xxxx

Frame B:
lhin*lckfllklslvkpshwklkvvttlkmsrlkfktkkvfhqinkd*sllvnn*kmvv
lflittfkrnplsi*fld*evvcksl*klslvkpsp*rlkvvitlkmlklkfktkkvshq
inkd*fslvnn*kmvvlsltttfkrnplstwfsd*evvcksl*kp*lvklspwkskvltt
lkmlkpksktkkvshqinkd*fslvnn*kmvvlsltttfkknplsi*x*dyxxgckifvk
tllvrpsp*r*x*XYIXNVKPNSRXXGFPXITXIIFAG---

---xegxyslxxxmxkkxxlhlx*x*xvvxxxxfettxxvkpxp*xfkvvitlkmxkxxa
kxxkvfppdxqxxifsw*tirrwxysl*lqhpkxihsxfssqixrwyanlckxxxw*dhh
igsrrf**h*kcqsqnsrqrrystrstkinfrw*tirrwsysl*lqyskgihspfssqik
rwyanlc*nfnr*nyhlgsrr***h*kc*sqnprqrrystrsttshfrw*tirrwsyxxa
dyniakgmpllpfsxxxx

Frame C:
yilinyanfc*nshw*nhhigs*r**qh*kcqg*nsrqrrystrstkinlcw*tirrwsy
sf*lqhskgihspfss*ikrwyanlcknshw*nhhlrg*r***h*kc*s*nsrqrryptr
stkinfrw*tirrwsysl*lqhskgihsplgsqikrwyanlcknldw*nyhlgsrrf*qh
*kc*sqnprqrryptrstkinfrw*tirrwsysl*lqhskrihspfxfkitxxdakfllk
lyw*dhhlkgexxdtlxmssqipxxkgspxspx*fslv---

---kkxxtlsxxxcxknxlcixfxxxrwxxnxcsklxxxxnhxlxssr***h*kcxxrxp
xqxryfxqixxvsfsagkqledgxtlsdcniqkxstlhlvlrlxggmqifvkxxxgktit
levegsdnienvkakiqdkegippdqqrlifagkqledgrtlsdyniqkestlhlvlrlr
ggmqifvktltgktitlevegsdnienvkakiqdkegippdqqrlifagkqledgrtxll
ittlqkechxxhlvxqx
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFD132 (CFD132Q) /CSM/CF/CFD1-B/CFD132Q.Seq.d/                       1600   0.0
CFD217 (CFD217Q) /CSM/CF/CFD2-A/CFD217Q.Seq.d/                       1437   0.0
SFI844 (SFI844Q) /CSM/SF/SFI8-B/SFI844Q.Seq.d/                       1364   0.0
CFK313 (CFK313Q) /CSM/CF/CFK3-A/CFK313Q.Seq.d/                       1342   0.0
CFA808 (CFA808Q) /CSM/CF/CFA8-A/CFA808Q.Seq.d/                       1326   0.0
AFL428 (AFL428Q) /CSM/AF/AFL4-B/AFL428Q.Seq.d/                       1302   0.0
CHC452 (CHC452Q) /CSM/CH/CHC4-C/CHC452Q.Seq.d/                       1292   0.0
CFI305 (CFI305Q) /CSM/CF/CFI3-A/CFI305Q.Seq.d/                       1287   0.0
CFB835 (CFB835Q) /CSM/CF/CFB8-B/CFB835Q.Seq.d/                       1261   0.0
AFM862 (AFM862Q) /CSM/AF/AFM8-C/AFM862Q.Seq.d/                       1245   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

M23753|M23753.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB14.  1368   0.0    6
M23754|M23754.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB2.   803   0.0    5
M19491|M19491.1 Slime mold (D.discoideum) ubiquitin p229C/pLK229 gene, complete cds.   559   0.0    5
M23748|M23748.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB19.   551   0.0    5
M19666|M19666.1 Slime mold (D.discoideum) ubiquitin gene, 3' end, clone p229C.   551   0.0    5
M23751|M23751.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB18.   811   0.0    4
M23752|M23752.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB17.   811   0.0    3
M19492|M19492.1 Slime mold (D.discoideum) ubiquitin lambda-229 gene, complete cds.   793   0.0    4
Z54197|Z54197.1 C.albicans UBI4 gene encoding polyubiquitin.      351   0.0    5
AJ133813|AJ133813.1 Plasmodium falciparum pub gene, exons 1-2.    192   e-153  13
dna update 2004. 3. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB021974_1(AB021974|pid:none) Bombyx mori UBI3 mRNA for polyubiq...   704   0.0
T16144(T16144) ubiquitin - Caenorhabditis elegans  &U23172_1(U23...   704   0.0
BC127395_1(BC127395|pid:none) Danio rerio zgc:153686, mRNA (cDNA...   700   0.0
AM910995_106(AM910995|pid:none) Plasmodium knowlesi strain H chr...   698   0.0
EF134146_1(EF134146|pid:none) Karlodinium micrum strain CCMP1975...   692   0.0
AM494963_268(AM494963|pid:none) Leishmania braziliensis chromoso...   683   0.0
AM494972_376(AM494972|pid:none) Leishmania braziliensis chromoso...   682   0.0
S32020(S32020) polyubiquitin 6 - Geodia cydonium  &X70917_1(X709...   601   e-170
AE017351_259(AE017351|pid:none) Cryptococcus neoformans var. neo...   597   e-169
S43306(S43306)polyubiquitin 6 - Geodia cydonium                       532   e-149
protein update 2009. 5.12
PSORT 

 psg: 0.93  gvh: 0.66  alm: 0.64  top: 0.57  tms: 0.00  mit: 0.34  mip: 0.10
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: extracellular, including cell wall
	 20.0 %: mitochondrial
	 16.0 %: cytoplasmic
	 12.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: plasma membrane
	  4.0 %: vacuolar

>> prediction for CFD132 is exc
5' end seq. ID CFD132F
5' end seq. 
>CFD132F.Seq
TTTACATATTAATTAATTATGCAAATTTTTGTTAAAACTCTCACTGGTAAAACCATCACA
TTGGAAGTTGAAGGTAGTGACAACATTGAAAATGTCAAGGCTAAAATTCAAGACAAAGAA
GGTATTCCACCAGATCAACAAAGATTAATCTTTGCTGGTAAACAATTAGAAGATGGTCGT
ACTCTTTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTTCTTAGATTAAGA
GGTGGTATGCAAATCTTTGTAAAAACTCTCACTGGTAAAACCATCACCTTAGAGGTTGAA
GGTAGTGATAACATTGAAAATGTTAAAGCTAAAATTCAAGACAAAGAAGGTATCCCACCA
GATCAACAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGAC
TACAACATTCAAAAGGAATCCACTCTCCACTTGGTTCTCAGATTAAGAGGTGGTATGCAA
ATCTTTGTAAAAACCTTGACTGGTAAAACTATCACCTTGGAAGTCGAAGGTTCTGACAAC
ATTGAAAATGTTAAAGCCAAAATCCAAGACAAAGAAGGTATCCCACCAGATCAACAAAGA
TTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGACTACAACATTCAA
AAAGAATCCACTCTCCATTTAGNTTTAAGATTACCANGNGGGATGCAAAATTTTTGTTAA
AACTCTACTGGTAAGACCATCACCTTAAAGGTGAANGTAGNGATACATTGNAAATGTCAA
GCCAAATTCCAGANAANAAGGGTTCCCCCNAATCACCAANATAATTTTCGCTGGTAA---
-------
Length of 5' end seq. 837
3' end seq. ID CFD132Z
3' end seq. 
>CFD132Z.Seq
----------ANAAGAAGGNNANTACTCTCTCTGNNGNANCATGCANAAAAAATNCNCTC
TGCATTTANTTTGANNTTAANAGGTGGTANNNNAATNTNTGTTCGAAACTACNAANNNGG
TNAAACCATNNCCTTGANAGTTCAAGGTAGTGATAACATTGAAAATGTNNAAGNCGANAG
CCAAGNCAAANAAGGTATTTCCNCCAGATCANCAANGTNTCATTTTCAGCTGGTAAACAA
TTAGAAGATGGCNGTACTCTCTCTGATTGCAACATCCAAAAANAATCCACTCTNCATTTA
GTTCTCAGATTAANAGGTGGTATGCAAATCTTTGTAAAANCCNTGNNTGGTAAGACCATC
ACATTGGAAGTCGAAGGTTCTGATAACATTGAAAATGTCAAAGCCAAAATTCAAGACAAA
GAAGGTATTCCACCAGATCAACAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGT
CGTACTCTCTCTGACTACAATATTCAAAAGGAATCCACTCTCCATTTAGTTCTCAGATTA
AGAGGTGGTATGCAAATCTTTGTTAAAACTTTAACAGGTAAAACTATCACCTTGGAAGTC
GAAGGTAGTGATAACATTGAAAATGTTAAAGCCAAAATCCAAGACAAAGAAGGTATTCCA
CCAGATCAACAACGTCTCATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTNCNCTG
CTGATTACAACATTGCAAAAGGAATGCCACTNCTNCCATTTAGTTNCNCAGNNTNA
Length of 3' end seq. 766
Connected seq. ID CFD132P
Connected seq. 
>CFD132P.Seq
TTTACATATTAATTAATTATGCAAATTTTTGTTAAAACTCTCACTGGTAAAACCATCACA
TTGGAAGTTGAAGGTAGTGACAACATTGAAAATGTCAAGGCTAAAATTCAAGACAAAGAA
GGTATTCCACCAGATCAACAAAGATTAATCTTTGCTGGTAAACAATTAGAAGATGGTCGT
ACTCTTTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTTCTTAGATTAAGA
GGTGGTATGCAAATCTTTGTAAAAACTCTCACTGGTAAAACCATCACCTTAGAGGTTGAA
GGTAGTGATAACATTGAAAATGTTAAAGCTAAAATTCAAGACAAAGAAGGTATCCCACCA
GATCAACAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGAC
TACAACATTCAAAAGGAATCCACTCTCCACTTGGTTCTCAGATTAAGAGGTGGTATGCAA
ATCTTTGTAAAAACCTTGACTGGTAAAACTATCACCTTGGAAGTCGAAGGTTCTGACAAC
ATTGAAAATGTTAAAGCCAAAATCCAAGACAAAGAAGGTATCCCACCAGATCAACAAAGA
TTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGACTACAACATTCAA
AAAGAATCCACTCTCCATTTAGNTTTAAGATTACCANGNGGGATGCAAAATTTTTGTTAA
AACTCTACTGGTAAGACCATCACCTTAAAGGTGAANGTAGNGATACATTGNAAATGTCAA
GCCAAATTCCAGANAANAAGGGTTCCCCCNAATCACCAANATAATTTTCGCTGGTAA---
-------ANAAGAAGGNNANTACTCTCTCTGNNGNANCATGCANAAAAAATNCNCTCTGC
ATTTANTTTGANNTTAANAGGTGGTANNNNAATNTNTGTTCGAAACTACNAANNNGGTNA
AACCATNNCCTTGANAGTTCAAGGTAGTGATAACATTGAAAATGTNNAAGNCGANAGCCA
AGNCAAANAAGGTATTTCCNCCAGATCANCAANGTNTCATTTTCAGCTGGTAAACAATTA
GAAGATGGCNGTACTCTCTCTGATTGCAACATCCAAAAANAATCCACTCTNCATTTAGTT
CTCAGATTAANAGGTGGTATGCAAATCTTTGTAAAANCCNTGNNTGGTAAGACCATCACA
TTGGAAGTCGAAGGTTCTGATAACATTGAAAATGTCAAAGCCAAAATTCAAGACAAAGAA
GGTATTCCACCAGATCAACAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGT
ACTCTCTCTGACTACAATATTCAAAAGGAATCCACTCTCCATTTAGTTCTCAGATTAAGA
GGTGGTATGCAAATCTTTGTTAAAACTTTAACAGGTAAAACTATCACCTTGGAAGTCGAA
GGTAGTGATAACATTGAAAATGTTAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCA
GATCAACAACGTCTCATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTNCNCTGCTG
ATTACAACATTGCAAAAGGAATGCCACTNCTNCCATTTAGTTNCNCAGNNTNA
Length of connected seq. 1603
Full length Seq ID -
Full length Seq. -
Length of full length seq. -