>CFD131 (CFD131Q) /CSM/CF/CFD1-B/CFD131Q.Seq.d/
TTATTATAGAATTACAGATCCAAGCAATGGAGATGACTTGATTTTCTCAAGTGAAACAAT
TTCAGGAGAGGATGAAGGTGATAAAATTAAATTGGAGACTGTTCCAGATAAAGATGACAA
AGCATTGTTTTTGCATACTAGTGGTAGCACTGGCAGACCAAAGGGTGTACCATTGACTCA
TGAAAATTTGGCAACCTCAAGTGCAAACATTTCCTCAACATTCCATTTAACCCCATCCGA
TTGCTCATATGTAGTCATGCCATTATTCCACGTTCATGGTTTAATTGGTGTTTGTTTATC
AACATTCAATGCTGGTGCTAGTTTAGTTGTGCCACCAAGATTCTCTGCAAGTGTATTTTG
GAGCCAAGTTAAACAATTCTCTGTAAATTGGTATAGTGCCGTACCTACAATTCATACAAT
TCTTTGCAACGTCGAGCAATCGGCCACATCCTCTGCATCCTCTTCCAACAAAGGGTTACT
TAGATTCATTAGATCATCGTCGTCATCATTATCACCAACTTTATTAGAGACATTGGAGCA
ATTCTTTGGCTGTCCAGTAATTGAGTCCTACGGTATGACAGXXXXXXXXXXAAAAGTATG
GCGAAGAGATTTGGGCTGCCGTCATCCCAAAAGTACCTCAATCAATTACAGTCGAAGAAA
TCACCCAATTCCTCCAAAAGAAATTAATCTNCTTCAAAGTGCCAAAGAAAATCATTATCA
CTGATAATTTCCCAAAAACTGCTTCAGGTAAAATTCAAAGAAGATTCATTGCAGATTTNC
TTTTAAAACAACAAAA

YYRITDPSNGDDLIFSSETISGEDEGDKIKLETVPDKDDKALFLHTSGSTGRPKGVPLTH
ENLATSSANISSTFHLTPSDCSYVVMPLFHVHGLIGVCLSTFNAGASLVVPPRFSASVFW
SQVKQFSVNWYSAVPTIHTILCNVEQSATSSASSSNKGLLRFIRSSSSSLSPTLLETLEQ
FFGCPVIESYGMT---

---KYGEEIWAAVIPKVPQSITVEEITQFLQKKLIXFKVPKKIIITDNFPKTASGKIQRR
FIADXLLKQQ

Frame A:
ll*nyrskqwr*ldflk*nnfrrg*r**n*igdcsr*r*qsivfay*w*hwqtkgctids
*kfgnlkckhflnipfnpirllicshaiiprswfnwclfiniqcwc*fscatkilckcil
eps*tilcklv*crtynsynslqrraighilcilfqqrvt*ih*iivviiitnfirdiga
ilwlssn*vlryd---

---ksmakrfglpssqkylnqlqskkspnsskrn*sxskcqrkslsliisqkllqvkfke
dslqixf*nnk

Frame B:
YYRITDPSNGDDLIFSSETISGEDEGDKIKLETVPDKDDKALFLHTSGSTGRPKGVPLTH
ENLATSSANISSTFHLTPSDCSYVVMPLFHVHGLIGVCLSTFNAGASLVVPPRFSASVFW
SQVKQFSVNWYSAVPTIHTILCNVEQSATSSASSSNKGLLRFIRSSSSSLSPTLLETLEQ
FFGCPVIESYGMT---

---kvwrrdlgcrhpkstsinysrrnhpippkeinllqsakenhyh**fpkncfr*nskk
ihcrfxfkttk

Frame C:
iielqiqamemt*fsqvkqfqermkviklnwrlfqikmtkhcfcilvvaladqrvyh*lm
kiwqpqvqtfpqhsi*phpiahm*schystfmv*lvfvyqhsmlvlv*lchqdslqvyfg
aklnnsl*igivpylqfiqffatssnrphplhplptkgyldsldhrrhhyhqly*rhwsn
slavq*lsptv*q---

---KYGEEIWAAVIPKVPQSITVEEITQFLQKKLIXFKVPKKIIITDNFPKTASGKIQRR
FIADXLLKQQ

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFD131 (CFD131Q) /CSM/CF/CFD1-B/CFD131Q.Seq.d/                       1507   0.0
CFC728 (CFC728Q) /CSM/CF/CFC7-B/CFC728Q.Seq.d/                       1152   0.0
CFE276 (CFE276Q) /CSM/CF/CFE2-D/CFE276Q.Seq.d/                       1045   0.0
AFF365 (AFF365Q) /CSM/AF/AFF3-C/AFF365Q.Seq.d/                        714   0.0
VFF556 (VFF556Q) /CSM/VF/VFF5-C/VFF556Q.Seq.d/                        379   e-104
SLK446 (SLK446Q) /CSM/SL/SLK4-B/SLK446Q.Seq.d/                        379   e-104
SLJ158 (SLJ158Q) /CSM/SL/SLJ1-C/SLJ158Q.Seq.d/                        379   e-104
SLI872 (SLI872Q) /CSM/SL/SLI8-C/SLI872Q.Seq.d/                        379   e-104
SLH161 (SLH161Q) /CSM/SL/SLH1-C/SLH161Q.Seq.d/                        379   e-104
SLA103 (SLA103Q) /CSM/SL/SLA1-A/SLA103Q.Seq.d/                        379   e-104

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BZ298692|BZ298692.1 CG4529.r1 Candida glabrata Random Genomic Library Candida glabratagenomic clone CG4529, genomic survey sequence.    66   8e-07  1
AC145826|AC145826.3 Pan troglodytes clone rp43-50f23, WORKING DRAFT SEQUENCE, 12 unordered pieces.    38   0.14   8
AZ926033|AZ926033.1 476.dio40a01.s1 Saccharomyces castellii NRRL Y-12630 Saccharomyces castellii genomic clone 476.dio40a01.s1, DNA sequence.    48   0.19   1
AC121673|AC121673.4 Rattus norvegicus clone CH230-259I9, WORKING DRAFT SEQUENCE, 2 unordered pieces.    42   0.27   6
AC012584|AC012584.6 Homo sapiens clone RP11-4M21, WORKING DRAFT SEQUENCE, 14 unordered pieces.    34   0.46   5
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    42   0.50   10
AC007370|AC007370.7 Homo sapiens, clone 22_A_3, complete sequence.    36   0.55   5
CC647542|CC647542.1 OGUGU52TV ZM_0.7_1.5_KB Zea mays genomic clone ZMMBMa0437I07, genomic survey sequence.    46   0.77   1
CG114730|CG114730.1 PUFSA55TB ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa0720I13, genomic survey sequence.    46   0.77   1
AC073776|AC073776.1 Mus musculus clone RP23-384C11, WORKING DRAFT SEQUENCE, 18 unordered pieces.    44   1.2    4

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE016814_356(AE016814|pid:none) Ashbya gossypii (= Eremothecium ...   145   1e-33
AM270070_4(AM270070|pid:none) Aspergillus niger contig An04c0090...   139   1e-31
AP007157_804(AP007157|pid:none) Aspergillus oryzae RIB40 genomic...   139   1e-31
EF676481_1(EF676481|pid:none) Picea sitchensis clone WS02739_F21...   135   1e-30
(O74976) RecName: Full=Putative peroxisomal-coenzyme A synthetas...   135   2e-30
D89105_1(D89105|pid:none) Schizosaccharomyces pombe mRNA, partia...   134   2e-30
CR380957_291(CR380957|pid:none) Candida glabrata strain CBS138 c...   132   9e-30
(P38137) RecName: Full=Peroxisomal-coenzyme A synthetase;       ...   129   1e-28
AM117807_1(AM117807|pid:none) Coffea arabica partial mRNA for 4-...   127   4e-28
CP001337_2445(CP001337|pid:none) Chloroflexus aggregans DSM 9485...   127   5e-28

 psg: 0.75  gvh: 0.52  alm: 0.32  top: 0.67  tms: 0.07  mit: 0.26  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.09  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: cytoplasmic
	 24.0 %: mitochondrial
	 20.0 %: nuclear
	  8.0 %: plasma membrane
	  8.0 %: endoplasmic reticulum
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for CFD131 is cyt

>CFD131F.Seq
TTATTATAGAATTACAGATCCAAGCAATGGAGATGACTTGATTTTCTCAAGTGAAACAAT
TTCAGGAGAGGATGAAGGTGATAAAATTAAATTGGAGACTGTTCCAGATAAAGATGACAA
AGCATTGTTTTTGCATACTAGTGGTAGCACTGGCAGACCAAAGGGTGTACCATTGACTCA
TGAAAATTTGGCAACCTCAAGTGCAAACATTTCCTCAACATTCCATTTAACCCCATCCGA
TTGCTCATATGTAGTCATGCCATTATTCCACGTTCATGGTTTAATTGGTGTTTGTTTATC
AACATTCAATGCTGGTGCTAGTTTAGTTGTGCCACCAAGATTCTCTGCAAGTGTATTTTG
GAGCCAAGTTAAACAATTCTCTGTAAATTGGTATAGTGCCGTACCTACAATTCATACAAT
TCTTTGCAACGTCGAGCAATCGGCCACATCCTCTGCATCCTCTTCCAACAAAGGGTTACT
TAGATTCATTAGATCATCGTCGTCATCATTATCACCAACTTTATTAGAGACATTGGAGCA
ATTCTTTGGCTGTCCAGTAATTGAGTCCTACGGTATGACAG----------

>CFD131Z.Seq
----------AAAAGTATGGCGAAGAGATTTGGGCTGCCGTCATCCCAAAAGTACCTCAA
TCAATTACAGTCGAAGAAATCACCCAATTCCTCCAAAAGAAATTAATCTNCTTCAAAGTG
CCAAAGAAAATCATTATCACTGATAATTTCCCAAAAACTGCTTCAGGTAAAATTCAAAGA
AGATTCATTGCAGATTTNCTTTTAAAACAACAAAA

>CFD131P.Seq
TTATTATAGAATTACAGATCCAAGCAATGGAGATGACTTGATTTTCTCAAGTGAAACAAT
TTCAGGAGAGGATGAAGGTGATAAAATTAAATTGGAGACTGTTCCAGATAAAGATGACAA
AGCATTGTTTTTGCATACTAGTGGTAGCACTGGCAGACCAAAGGGTGTACCATTGACTCA
TGAAAATTTGGCAACCTCAAGTGCAAACATTTCCTCAACATTCCATTTAACCCCATCCGA
TTGCTCATATGTAGTCATGCCATTATTCCACGTTCATGGTTTAATTGGTGTTTGTTTATC
AACATTCAATGCTGGTGCTAGTTTAGTTGTGCCACCAAGATTCTCTGCAAGTGTATTTTG
GAGCCAAGTTAAACAATTCTCTGTAAATTGGTATAGTGCCGTACCTACAATTCATACAAT
TCTTTGCAACGTCGAGCAATCGGCCACATCCTCTGCATCCTCTTCCAACAAAGGGTTACT
TAGATTCATTAGATCATCGTCGTCATCATTATCACCAACTTTATTAGAGACATTGGAGCA
ATTCTTTGGCTGTCCAGTAATTGAGTCCTACGGTATGACAG----------AAAAGTATG
GCGAAGAGATTTGGGCTGCCGTCATCCCAAAAGTACCTCAATCAATTACAGTCGAAGAAA
TCACCCAATTCCTCCAAAAGAAATTAATCTNCTTCAAAGTGCCAAAGAAAATCATTATCA
CTGATAATTTCCCAAAAACTGCTTCAGGTAAAATTCAAAGAAGATTCATTGCAGATTTNC
TTTTAAAACAACAAAA