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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFD109
Library CF
(Link to library)
Clone ID CFD109
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U16358-1
Original site URL
Representative seq. ID CFD109P
(Link to Original site)
Representative DNA sequence 
>CFD109 (CFD109Q) /CSM/CF/CFD1-A/CFD109Q.Seq.d/
ACTTCACAAAAAACATTTTCTAATAAAACAGATAAATTAAAAAATGACTACCTTTAACGA
ATATCCATTCTTGGCTGAATTAGGCATTAAAGCTGAAAATAATGATGGAGTCTTCAATGG
AAAATGGGGAGGTGCTGGTGAAATCATCAAATGTTTAAATCCAACAAATAATAAAGTTAT
TGCAACTGTTAGAGGTGCTGCACCAGAAGAATATGAAACATGTATTCAAGCAATGTTAGC
AGCAAAAGTAAAATGGGCATTAACACCAGCTCCAAGAAGAGGTGAAATTGTTAGATTAAT
TGGTCAAGCCATGAGAGAAAAAATTGAACCATTATCAAAATTAATTTCATTAGAAATGGG
TAAAATTTACATTGAAGCTAAAGGTGAAGTACAAGAATTCATTGACGTATGCGATTATGC
AACTGGTTTAAGTAGATCAATCAATGGTCAAGTGATGCCATCTGAACGTCCAAATCACAT
TTTAATGGAAACCTGGAATCCATTAGGTTTAGTTGGTATCATTACTGCTTTCAATTTCCC
ATGTGCCGTACTTGGTTGGAATGCTGCAATCTCAATGATTTGCGGTAACGTCCAAXXXXX
XXXXXAAATAAAAAANCAAGGTGGTAAGGTCGTCATTGGTGGTAATAAACTCGANATCAG
TGGTGGAAACTTTGTTGAACCAACCGTCGTTGCCNTTGAACATNATGCTCCAATNGTAAA
NACTGAACTCTTTGTTCCAATTCTNTACATAATGAAATTCAAAAATNTTGACGATGCTTT
TGCCTGGAATAATNAAGTCCCNCAAGGTCTCTCATCTTCCCTCTTCNCAAACAATCAAAA
GAATATCTTCAAATGGCTTGGACCCACCGGATCTGACTGTGGNANAGTTAACGTAAATGN
AGCNACNAACGGNGCTGAAATTGGTGGNGCCCTTGGAGGTGAAAAANAGNCCGGAGGTGG
TANAGAATCTGGCNCAGACAGCNGGAAACAGNATTGCCGTCGTAGNACTAANACNATCAA
CTATGGTAANACTATGCCNTTATCCCAAGGGATCNATTTTAACTAAAATTACCAAAAAAA
AAAACCAAATGTAACTTACATAACTAAAAAAAGNAATAT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
lhkkhflikqin*KMTTFNEYPFLAELGIKAENNDGVFNGKWGGAGEIIKCLNPTNNKVI
ATVRGAAPEEYETCIQAMLAAKVKWALTPAPRRGEIVRLIGQAMREKIEPLSKLISLEMG
KIYIEAKGEVQEFIDVCDYATGLSRSINGQVMPSERPNHILMETWNPLGLVGIITAFNFP
CAVLGWNAAISMICGNVQ---

---IKXQGGKVVIGGNKLXISGGNFVEPTVVAXEHXAPXVXTELFVPILYIMKFKNXDDA
FAWNNXVPQGLSSSLFXNNQKNIFKWLGPTGSDCGXVNVNXATNGAEIGGALGGEKXXGG
GXESGXDSXKQXCRRXTXTINYGXTMPLSQGIXFN*nyqkkkpnvtyitkkxn
Translated Amino Acid sequence (All Frames) 
Frame A:
tsqktfsnktdklkndyl*risilg*irh*s*k**wslqwkmgrcw*nhqmfksnk**sy
cnc*rcctrri*nmyssnvsskskmgintsskkr*nc*inwssherkn*tiikinfirng
*nlh*s*r*strih*rmrlcnwfk*inqwssdai*tskshfngnlesirfswyhycfqfp
mcrtwleccnlndlr*rp---

---k*kxkvvrsslvvinsxsvvetllnqpslplnxmlqx*xlnslfqfxt**nskxltm
llpgixksxkvshlpssqtikrissngldppdltvxxlt*mxxxtxlklvxplevkxxpe
vvxnlaqtagnxiavvxlxxstmvxlcxypkgsiltkitkkknqm*lt*lkkxi

Frame B:
lhkkhflikqin*KMTTFNEYPFLAELGIKAENNDGVFNGKWGGAGEIIKCLNPTNNKVI
ATVRGAAPEEYETCIQAMLAAKVKWALTPAPRRGEIVRLIGQAMREKIEPLSKLISLEMG
KIYIEAKGEVQEFIDVCDYATGLSRSINGQVMPSERPNHILMETWNPLGLVGIITAFNFP
CAVLGWNAAISMICGNVQ---

---nkkxrw*grhww**trxqwwklc*tnrrcx*txcsnxkx*tlcsnsxhneiqkx*rc
fcle*xspxrslifplxkqskeylqmawthri*lwxs*rkxsxxrx*nwwxpwr*kxxrr
wxriwxrqxetxlps*x*xxqlw*xyaxiprdxf*lklpkkktkcnlhn*kkxy

Frame C:
ftknif**nr*ikk*lpltnihswln*alklkimmessmengevlvkssnv*iqqiikll
qllevlhqknmkhvfkqc*qqk*ngh*hqlqeevklld*lvkp*ekklnhyqn*fh*kwv
kftlklkvkyknsltyaimqlv*vdqsmvk*chlnvqitf*wkpgih*v*lvslllsish
vpylvgmlqsq*favts---

---IKXQGGKVVIGGNKLXISGGNFVEPTVVAXEHXAPXVXTELFVPILYIMKFKNXDDA
FAWNNXVPQGLSSSLFXNNQKNIFKWLGPTGSDCGXVNVNXATNGAEIGGALGGEKXXGG
GXESGXDSXKQXCRRXTXTINYGXTMPLSQGIXFN*nyqkkkpnvtyitkkxn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFD109 (CFD109Q) /CSM/CF/CFD1-A/CFD109Q.Seq.d/                       1889   0.0
VFK658 (VFK658Q) /CSM/VF/VFK6-C/VFK658Q.Seq.d/                       1179   0.0
VFB844 (VFB844Q) /CSM/VF/VFB8-B/VFB844Q.Seq.d/                       1179   0.0
SFK705 (SFK705Q) /CSM/SF/SFK7-A/SFK705Q.Seq.d/                       1179   0.0
SFI562 (SFI562Q) /CSM/SF/SFI5-C/SFI562Q.Seq.d/                       1179   0.0
SFF818 (SFF818Q) /CSM/SF/SFF8-A/SFF818Q.Seq.d/                       1179   0.0
SFE780 (SFE780Q) /CSM/SF/SFE7-D/SFE780Q.Seq.d/                       1179   0.0
SFD744 (SFD744Q) /CSM/SF/SFD7-B/SFD744Q.Seq.d/                       1179   0.0
SFD261 (SFD261Q) /CSM/SF/SFD2-C/SFD261Q.Seq.d/                       1179   0.0
CFI775 (CFI775Q) /CSM/CF/CFI7-D/CFI775Q.Seq.d/                       1179   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117076|AC117076.3 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.   791   0.0    7
BU042811|BU042811.1 PP_LEa0014A23f Peach developing fruit mesocarp Prunus persica cDNA clone PP_LEa0014A23f, mRNA sequence.    74   7e-12  2
D88434|D88434.1 Malus domestica mRNA for protein abundantly expressed during apple fruit development, complete cds.    72   2e-08  2
AY034889|AY034889.1 Tortula ruralis aldehyde dehydrogenase ALDH2 (RNP129b) mRNA, complete cds.    46   2e-07  3
BG444603|BG444603.1 GA__Ea0024O05f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0024O05f, mRNA sequence.    42   3e-04  2
AW616676|AW616676.1 EST323087 L. hirsutum trichome, Cornell University Lycopersicon hirsutum cDNA clone cLHT12I1 5', mRNA sequence.    54   0.001  2
CD480505|CD480505.1 eca01-25ms1-b04 Eca01 Eschscholzia californica cDNA clone eca01-25ms1-b04 5', mRNA sequence.    56   0.001  1
BG887757|BG887757.1 EST513608 cSTD Solanum tuberosum cDNA clone cSTD7K13 5' sequence, mRNA sequence.    54   0.001  2
BI920919|BI920919.1 EST540854 potato microtubers, in vitro-grown Solanum tuberosum cDNA clone cSTE26J22 5' end, mRNA sequence.    54   0.001  2
BG887113|BG887113.1 EST512964 cSTD Solanum tuberosum cDNA clone cSTD3M14 5' sequence, mRNA sequence.    54   0.001  2
dna update 2004. 3. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P83401) RecName: Full=Putative aldehyde dehydrogenase family 7 ...   377   e-103
BC044367_1(BC044367|pid:none) Danio rerio aldehyde dehydrogenase...   233   9e-60
EF678715_1(EF678715|pid:none) Picea sitchensis clone WS0295_M17 ...   231   4e-59
BT044648_1(BT044648|pid:none) Salmo salar clone ssal-rgf-001-326...   229   2e-58
AF323586_1(AF323586|pid:none) Oryza sativa aldehyde dehydrogenas...   224   3e-57
AY847462_1(AY847462|pid:none) Acanthopagrus schlegelii antiquiti...   223   9e-57
AY883858_1(AY883858|pid:none) Sterkiella histriomuscorum turgor ...   222   2e-56
AK297365_1(AK297365|pid:none) Homo sapiens cDNA FLJ56008 complet...   221   3e-56
(P49419) RecName: Full=Alpha-aminoadipic semialdehyde dehydrogen...   221   3e-56
BT067707_1(BT067707|pid:none) Zea mays full-length cDNA clone ZM...   221   5e-56
protein update 2009. 5.12
PSORT 

 psg: 0.78  gvh: 0.31  alm: 0.29  top: 0.77  tms: 0.07  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 52.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for CFD109 is nuc
5' end seq. ID CFD109F
5' end seq. 
>CFD109F.Seq
ACTTCACAAAAAACATTTTCTAATAAAACAGATAAATTAAAAAATGACTACCTTTAACGA
ATATCCATTCTTGGCTGAATTAGGCATTAAAGCTGAAAATAATGATGGAGTCTTCAATGG
AAAATGGGGAGGTGCTGGTGAAATCATCAAATGTTTAAATCCAACAAATAATAAAGTTAT
TGCAACTGTTAGAGGTGCTGCACCAGAAGAATATGAAACATGTATTCAAGCAATGTTAGC
AGCAAAAGTAAAATGGGCATTAACACCAGCTCCAAGAAGAGGTGAAATTGTTAGATTAAT
TGGTCAAGCCATGAGAGAAAAAATTGAACCATTATCAAAATTAATTTCATTAGAAATGGG
TAAAATTTACATTGAAGCTAAAGGTGAAGTACAAGAATTCATTGACGTATGCGATTATGC
AACTGGTTTAAGTAGATCAATCAATGGTCAAGTGATGCCATCTGAACGTCCAAATCACAT
TTTAATGGAAACCTGGAATCCATTAGGTTTAGTTGGTATCATTACTGCTTTCAATTTCCC
ATGTGCCGTACTTGGTTGGAATGCTGCAATCTCAATGATTTGCGGTAACGTCCAA-----
-----
Length of 5' end seq. 595
3' end seq. ID CFD109Z
3' end seq. 
>CFD109Z.Seq
----------AAATAAAAAANCAAGGTGGTAAGGTCGTCATTGGTGGTAATAAACTCGAN
ATCAGTGGTGGAAACTTTGTTGAACCAACCGTCGTTGCCNTTGAACATNATGCTCCAATN
GTAAANACTGAACTCTTTGTTCCAATTCTNTACATAATGAAATTCAAAAATNTTGACGAT
GCTTTTGCCTGGAATAATNAAGTCCCNCAAGGTCTCTCATCTTCCCTCTTCNCAAACAAT
CAAAAGAATATCTTCAAATGGCTTGGACCCACCGGATCTGACTGTGGNANAGTTAACGTA
AATGNAGCNACNAACGGNGCTGAAATTGGTGGNGCCCTTGGAGGTGAAAAANAGNCCGGA
GGTGGTANAGAATCTGGCNCAGACAGCNGGAAACAGNATTGCCGTCGTAGNACTAANACN
ATCAACTATGGTAANACTATGCCNTTATCCCAAGGGATCNATTTTAACTAAAATTACCAA
AAAAAAAAACCAAATGTAACTTACATAACTAAAAAAAGNAATAT
Length of 3' end seq. 514
Connected seq. ID CFD109P
Connected seq. 
>CFD109P.Seq
ACTTCACAAAAAACATTTTCTAATAAAACAGATAAATTAAAAAATGACTACCTTTAACGA
ATATCCATTCTTGGCTGAATTAGGCATTAAAGCTGAAAATAATGATGGAGTCTTCAATGG
AAAATGGGGAGGTGCTGGTGAAATCATCAAATGTTTAAATCCAACAAATAATAAAGTTAT
TGCAACTGTTAGAGGTGCTGCACCAGAAGAATATGAAACATGTATTCAAGCAATGTTAGC
AGCAAAAGTAAAATGGGCATTAACACCAGCTCCAAGAAGAGGTGAAATTGTTAGATTAAT
TGGTCAAGCCATGAGAGAAAAAATTGAACCATTATCAAAATTAATTTCATTAGAAATGGG
TAAAATTTACATTGAAGCTAAAGGTGAAGTACAAGAATTCATTGACGTATGCGATTATGC
AACTGGTTTAAGTAGATCAATCAATGGTCAAGTGATGCCATCTGAACGTCCAAATCACAT
TTTAATGGAAACCTGGAATCCATTAGGTTTAGTTGGTATCATTACTGCTTTCAATTTCCC
ATGTGCCGTACTTGGTTGGAATGCTGCAATCTCAATGATTTGCGGTAACGTCCAA-----
-----AAATAAAAAANCAAGGTGGTAAGGTCGTCATTGGTGGTAATAAACTCGANATCAG
TGGTGGAAACTTTGTTGAACCAACCGTCGTTGCCNTTGAACATNATGCTCCAATNGTAAA
NACTGAACTCTTTGTTCCAATTCTNTACATAATGAAATTCAAAAATNTTGACGATGCTTT
TGCCTGGAATAATNAAGTCCCNCAAGGTCTCTCATCTTCCCTCTTCNCAAACAATCAAAA
GAATATCTTCAAATGGCTTGGACCCACCGGATCTGACTGTGGNANAGTTAACGTAAATGN
AGCNACNAACGGNGCTGAAATTGGTGGNGCCCTTGGAGGTGAAAAANAGNCCGGAGGTGG
TANAGAATCTGGCNCAGACAGCNGGAAACAGNATTGCCGTCGTAGNACTAANACNATCAA
CTATGGTAANACTATGCCNTTATCCCAAGGGATCNATTTTAACTAAAATTACCAAAAAAA
AAAACCAAATGTAACTTACATAACTAAAAAAAGNAATAT
Length of connected seq. 1109
Full length Seq ID -
Full length Seq. -
Length of full length seq. -