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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFC892
Library CF
(Link to library)
Clone ID CFC892
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16243-1
Original site URL
Representative seq. ID CFC892P
(Link to Original site)
Representative DNA sequence 
>CFC892 (CFC892Q) /CSM/CF/CFC8-D/CFC892Q.Seq.d/
CTGGATTTATATATAATATTACACCCCATAACTAATAAAATGTCATTCAATTCAAGAATT
GAAACTATTTCTCGTCACTTAAGCACTGGACCAATTTTAGAATCAAATCCAACTTCTGGA
TCAGTTAAATCAGGAGATGATATTGTAATTGTTGCACCATTTCGTACAGCAATTTGTAAA
GCTAAAAGAGGAGCATTCAAAGAGACAGCACCAGATGATTTATTAGCACCAGTTATTAAA
CATATTATCAAAGTTACCAAATTAGATCCAAAATTAATTGGAGATGTTGTTATGGGAGCA
GTATTACCAAGATCATCACAAGGTGCAACCGAAGTTAGAGTTGCCACATTATTAGCAGGT
TTACCAAAGGAAGTACCATGTTATACAGTCAACAGACAATGTTCATCAGGTTTACAAGCA
ATTGCCAATTGTGCAGCAGCAGTCAAAGCAGGTTTCTATGACATTGGTTTAGCAGGCGGT
GTAGAATCAATGAGTTTAAATCCAATGGCATGGGATGGTGGTTTCAACGAGGTTXXXXXX
XXXXGTGTCACCAGAAAAGACCAAGATGAATTCTCTGTAAATTCACACAAGAAGGCAGGT
GCCGCCCAAAAAGCAGGTAAATTTGACGATGAAATCGTTCCAGTCACCGTAAAGACCGAG
GATGGCAAAACCATCGTCGTCGATAAAGACGAAGGTATCCGTGAGAAAACCACCGTTGCA
GATTTGGCCAAATTAAAACCAGCTTTCAAAGAGGGTGGTACAACCACCGCTGGTAACTCT
AGTCAAATGAGTGATGGTGCCGCCGCTTGTTTAGTTATGAAAAGAAGTACCGCCGAAAGA
TTGGGTCTCAAGGTTGAATTGGTTTTCGTAGCTTTTGCTGCTGTCGGTGTCGAACCATCC
ATTATGGGTATTGGTCCAGCCGTTGCAATTCCAGCCGCCTTAAAACAAGCTGGTCTCACC
ACTAAAGATATCGACGTTTTTGAAATCAATGAAGCTTTTGCTTCTCAAGCATTTTACAGT
TGTAAGGTTTTGGGTTTGGATATGAACAAAGTTAATCCAAATGGCTCTGGTATCGCTTTA
GGTCATCCATTAGGTGCTACTGGTGCCCGTCAAATGGCTACCATTTCAAGAGAATTACAT
CGTCGTAAAGGTAAATATGGTGTAATCTCTATGTGTAT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
LDLYIILHPITNKMSFNSRIETISRHLSTGPILESNPTSGSVKSGDDIVIVAPFRTAICK
AKRGAFKETAPDDLLAPVIKHIIKVTKLDPKLIGDVVMGAVLPRSSQGATEVRVATLLAG
LPKEVPCYTVNRQCSSGLQAIANCAAAVKAGFYDIGLAGGVESMSLNPMAWDGGFNEV--
-

---VTRKDQDEFSVNSHKKAGAAQKAGKFDDEIVPVTVKTEDGKTIVVDKDEGIREKTTV
ADLAKLKPAFKEGGTTTAGNSSQMSDGAAACLVMKRSTAERLGLKVELVFVAFAAVGVEP
SIMGIGPAVAIPAALKQAGLTTKDIDVFEINEAFASQAFYSCKVLGLDMNKVNPNGSGIA
LGHPLGATGARQMATISRELHRRKGKYGVISMC
Translated Amino Acid sequence (All Frames) 
Frame A:
LDLYIILHPITNKMSFNSRIETISRHLSTGPILESNPTSGSVKSGDDIVIVAPFRTAICK
AKRGAFKETAPDDLLAPVIKHIIKVTKLDPKLIGDVVMGAVLPRSSQGATEVRVATLLAG
LPKEVPCYTVNRQCSSGLQAIANCAAAVKAGFYDIGLAGGVESMSLNPMAWDGGFNEV--
-

---vspektkmnsl*ihtrrqvppkkqvnltmksfqsp*rprmakpsssiktkvsvrkpp
lqiwpn*nqlskrvvqpplvtlvk*vmvpplv*l*kevppkdwvsrlnwfs*llllsvsn
hplwvlvqplqfqpp*nklvsplkistflksmkllllkhftvvrfwvwi*tkliqmalvs
l*vih*vllvpvkwlpfqenyivvkvnmv*slcv

Frame B:
wiyi*yytp*likchsiqelklflvt*aldqf*nqiqlldqlnqemil*llhhfvqqfvk
lkeehskrqhqmiy*hqllnilsklpn*iqn*lemllweqyyqdhhkvqpklelphy*qv
yqrkyhviqstdnvhqvykqlpivqqqskqvsmtlv*qav*nq*v*iqwhgmvvstr---

---chqkrpr*ilckftqegrcrpksr*i*r*nrsshrkdrgwqnhrrr*rrryp*enhr
crfgqiktsfqrgwynhrw*l*sne*wcrrlfsyekkyrrkigsqg*igfrsfcccrcrt
ihygywssrcnssrlktswshh*ryrrf*nq*sfcfssilql*gfgfgyeqs*skwlwyr
frssircywcpsngyhfkritss*r*iwcnlyvy

Frame C:
gfiynitphn**nviqfkn*nyfsslkhwtnfriksnfwis*irr*ycncctisysnl*s
*krsiqrdstr*fistsy*tyyqsyqirskinwrccygssitkiitrcnrs*schiisrf
tkgstmlysqqtmfirftsncqlcsssqsrfl*hwfsrrcrinefksngmgwwfqrg---

---VTRKDQDEFSVNSHKKAGAAQKAGKFDDEIVPVTVKTEDGKTIVVDKDEGIREKTTV
ADLAKLKPAFKEGGTTTAGNSSQMSDGAAACLVMKRSTAERLGLKVELVFVAFAAVGVEP
SIMGIGPAVAIPAALKQAGLTTKDIDVFEINEAFASQAFYSCKVLGLDMNKVNPNGSGIA
LGHPLGATGARQMATISRELHRRKGKYGVISMC
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFC892 (CFC892Q) /CSM/CF/CFC8-D/CFC892Q.Seq.d/                       2276   0.0
VFM101 (VFM101Q) /CSM/VF/VFM1-A/VFM101Q.Seq.d/                       1257   0.0
VFE239 (VFE239Q) /CSM/VF/VFE2-B/VFE239Q.Seq.d/                       1257   0.0
SLH575 (SLH575Q) /CSM/SL/SLH5-D/SLH575Q.Seq.d/                       1257   0.0
SLG762 (SLG762Q) /CSM/SL/SLG7-C/SLG762Q.Seq.d/                       1257   0.0
SLG603 (SLG603Q) /CSM/SL/SLG6-A/SLG603Q.Seq.d/                       1257   0.0
SFI740 (SFI740Q) /CSM/SF/SFI7-B/SFI740Q.Seq.d/                       1257   0.0
SFI738 (SFI738Q) /CSM/SF/SFI7-B/SFI738Q.Seq.d/                       1257   0.0
SFH501 (SFH501Q) /CSM/SF/SFH5-A/SFH501Q.Seq.d/                       1257   0.0
SFG758 (SFG758Q) /CSM/SF/SFG7-C/SFG758Q.Seq.d/                       1257   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.  1257   0.0    8
CA917334|CA917334.1 EST641481 GPOD Medicago truncatula cDNA clone GPOD-35H18, mRNA sequence.    40   1e-15  6
CA858588|CA858588.1 EST635843 GLSD Medicago truncatula cDNA clone pGLSD-38M16, mRNA sequence.    40   6e-12  5
CB005315|CB005315.1 VVC011E10_126660 An expressed sequence tag database for abiotic stressed berries of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVC011E10 5, mRNA sequence.    60   5e-11  4
AU089542|AU089542.1 Lotus japonicus flower bud cDNA clone: Ljfb-v09.    44   3e-10  4
CB008288|CB008288.1 VVC055H06_148036 An expressed sequence tag database for abiotic stressed berries of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVC055H06 5, mRNA sequence.    60   2e-09  3
BM065622|BM065622.1 KS07005E12 KS07 Capsicum annuum cDNA, mRNA sequence.    68   2e-08  2
CA515447|CA515447.1 KS09042A06 KS09 Capsicum annuum cDNA, mRNA sequence.    68   2e-08  2
BM066045|BM066045.1 KS07010C02 KS07 Capsicum annuum cDNA, mRNA sequence.    68   3e-08  2
CF609274|CF609274.1 INFIO01_000052 Grape Inflorescence pSPORT1 Library Vitis vinifera cDNA 5', mRNA sequence.    56   5e-08  3
dna update 2004. 3. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116986_75(AC116986|pid:none) Dictyostelium discoideum chromoso...   694   0.0
X75329_1(X75329|pid:none) M.indica (Manila) THMF5 mRNA for 3-ket...   385   e-105
AM474896_9(AM474896|pid:none) Vitis vinifera contig VV79X001698....   384   e-105
S57792(S57792)acetyl-CoA C-acyltransferase (EC 2.3.1.16) B precu...   384   e-105
AB333797_1(AB333797|pid:none) Glycine max mRNA for peroxisomal 3...   381   e-104
EU964831_1(EU964831|pid:none) Zea mays clone 281881 3-ketoacyl-C...   379   e-103
BT034496_1(BT034496|pid:none) Zea mays full-length cDNA clone ZM...   379   e-103
BT070433_1(BT070433|pid:none) Picea sitchensis clone WS02729_F15...   378   e-103
T07989(T07989) acetyl-CoA C-acyltransferase (EC 2.3.1.16) precur...   377   e-103
AX025481_1(AX025481|pid:none) Sequence 7 from Patent WO0032789.       377   e-103
protein update 2009. 5.12
PSORT 

 psg: 0.75  gvh: 0.40  alm: 0.28  top: 0.33  tms: 0.07  mit: 0.24  mip: 0.05
 nuc: 0.02  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.04  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: nuclear
	 24.0 %: cytoplasmic
	 24.0 %: endoplasmic reticulum
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for CFC892 is nuc
5' end seq. ID CFC892F
5' end seq. 
>CFC892F.Seq
CTGGATTTATATATAATATTACACCCCATAACTAATAAAATGTCATTCAATTCAAGAATT
GAAACTATTTCTCGTCACTTAAGCACTGGACCAATTTTAGAATCAAATCCAACTTCTGGA
TCAGTTAAATCAGGAGATGATATTGTAATTGTTGCACCATTTCGTACAGCAATTTGTAAA
GCTAAAAGAGGAGCATTCAAAGAGACAGCACCAGATGATTTATTAGCACCAGTTATTAAA
CATATTATCAAAGTTACCAAATTAGATCCAAAATTAATTGGAGATGTTGTTATGGGAGCA
GTATTACCAAGATCATCACAAGGTGCAACCGAAGTTAGAGTTGCCACATTATTAGCAGGT
TTACCAAAGGAAGTACCATGTTATACAGTCAACAGACAATGTTCATCAGGTTTACAAGCA
ATTGCCAATTGTGCAGCAGCAGTCAAAGCAGGTTTCTATGACATTGGTTTAGCAGGCGGT
GTAGAATCAATGAGTTTAAATCCAATGGCATGGGATGGTGGTTTCAACGAGGTT------
----
Length of 5' end seq. 534
3' end seq. ID CFC892Z
3' end seq. 
>CFC892Z.Seq
----------GTGTCACCAGAAAAGACCAAGATGAATTCTCTGTAAATTCACACAAGAAG
GCAGGTGCCGCCCAAAAAGCAGGTAAATTTGACGATGAAATCGTTCCAGTCACCGTAAAG
ACCGAGGATGGCAAAACCATCGTCGTCGATAAAGACGAAGGTATCCGTGAGAAAACCACC
GTTGCAGATTTGGCCAAATTAAAACCAGCTTTCAAAGAGGGTGGTACAACCACCGCTGGT
AACTCTAGTCAAATGAGTGATGGTGCCGCCGCTTGTTTAGTTATGAAAAGAAGTACCGCC
GAAAGATTGGGTCTCAAGGTTGAATTGGTTTTCGTAGCTTTTGCTGCTGTCGGTGTCGAA
CCATCCATTATGGGTATTGGTCCAGCCGTTGCAATTCCAGCCGCCTTAAAACAAGCTGGT
CTCACCACTAAAGATATCGACGTTTTTGAAATCAATGAAGCTTTTGCTTCTCAAGCATTT
TACAGTTGTAAGGTTTTGGGTTTGGATATGAACAAAGTTAATCCAAATGGCTCTGGTATC
GCTTTAGGTCATCCATTAGGTGCTACTGGTGCCCGTCAAATGGCTACCATTTCAAGAGAA
TTACATCGTCGTAAAGGTAAATATGGTGTAATCTCTATGTGTAT
Length of 3' end seq. 634
Connected seq. ID CFC892P
Connected seq. 
>CFC892P.Seq
CTGGATTTATATATAATATTACACCCCATAACTAATAAAATGTCATTCAATTCAAGAATT
GAAACTATTTCTCGTCACTTAAGCACTGGACCAATTTTAGAATCAAATCCAACTTCTGGA
TCAGTTAAATCAGGAGATGATATTGTAATTGTTGCACCATTTCGTACAGCAATTTGTAAA
GCTAAAAGAGGAGCATTCAAAGAGACAGCACCAGATGATTTATTAGCACCAGTTATTAAA
CATATTATCAAAGTTACCAAATTAGATCCAAAATTAATTGGAGATGTTGTTATGGGAGCA
GTATTACCAAGATCATCACAAGGTGCAACCGAAGTTAGAGTTGCCACATTATTAGCAGGT
TTACCAAAGGAAGTACCATGTTATACAGTCAACAGACAATGTTCATCAGGTTTACAAGCA
ATTGCCAATTGTGCAGCAGCAGTCAAAGCAGGTTTCTATGACATTGGTTTAGCAGGCGGT
GTAGAATCAATGAGTTTAAATCCAATGGCATGGGATGGTGGTTTCAACGAGGTT------
----GTGTCACCAGAAAAGACCAAGATGAATTCTCTGTAAATTCACACAAGAAGGCAGGT
GCCGCCCAAAAAGCAGGTAAATTTGACGATGAAATCGTTCCAGTCACCGTAAAGACCGAG
GATGGCAAAACCATCGTCGTCGATAAAGACGAAGGTATCCGTGAGAAAACCACCGTTGCA
GATTTGGCCAAATTAAAACCAGCTTTCAAAGAGGGTGGTACAACCACCGCTGGTAACTCT
AGTCAAATGAGTGATGGTGCCGCCGCTTGTTTAGTTATGAAAAGAAGTACCGCCGAAAGA
TTGGGTCTCAAGGTTGAATTGGTTTTCGTAGCTTTTGCTGCTGTCGGTGTCGAACCATCC
ATTATGGGTATTGGTCCAGCCGTTGCAATTCCAGCCGCCTTAAAACAAGCTGGTCTCACC
ACTAAAGATATCGACGTTTTTGAAATCAATGAAGCTTTTGCTTCTCAAGCATTTTACAGT
TGTAAGGTTTTGGGTTTGGATATGAACAAAGTTAATCCAAATGGCTCTGGTATCGCTTTA
GGTCATCCATTAGGTGCTACTGGTGCCCGTCAAATGGCTACCATTTCAAGAGAATTACAT
CGTCGTAAAGGTAAATATGGTGTAATCTCTATGTGTAT
Length of connected seq. 1168
Full length Seq ID -
Full length Seq. -
Length of full length seq. -