>CFC883 (CFC883Q) /CSM/CF/CFC8-D/CFC883Q.Seq.d/
XXXXXXXXXXATAGTAGTGCTGCTTCCTCAGCCGATAGTAGCGCTGCCTCCTCATCNCCA
TCAAGCAGTGCTGCTTCAAGTNCCGCTTCAAGTGAACCATCAAGTAGCGCCGCTTCAAAT
AGTGCTCCATCCTCTGCTTCAAGTAGCGCTCCATCCTCTGCCTCAAGTAGTGCTCCATCA
TCATCAGCTTCAAGTTCAGGCNGCANTCATCA

---SSAASSADSSAASSSPSSSAASSXASSEPSSSAASNSAPSSASSSAPSSASSSAPSS
SASSSGXXH

Frame A:
---**ccflsr**rcllixikqccfkxrfk*tik*rrfk*csilcfk*rsilclk*csii
isfkfrxxss


Frame B:
---SSAASSADSSAASSSPSSSAASSXASSEPSSSAASNSAPSSASSSAPSSASSSAPSS
SASSSGXXH


Frame C:
---vvllpqpivalpphxhqavllqvplqvnhqvaplqivlhpllqvalhplpqvvlhhh
qlqvqaaxi

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFC883 (CFC883Q) /CSM/CF/CFC8-D/CFC883Q.Seq.d/                        377   e-104
VFN316 (VFN316Q) /CSM/VF/VFN3-A/VFN316Q.Seq.d/                        355   2e-97
VFM702 (VFM702Q) /CSM/VF/VFM7-A/VFM702Q.Seq.d/                        355   2e-97
VFB558 (VFB558Q) /CSM/VF/VFB5-C/VFB558Q.Seq.d/                        355   2e-97
VFA856 (VFA856Q) /CSM/VF/VFA8-C/VFA856Q.Seq.d/                        355   2e-97
VFA779 (VFA779Q) /CSM/VF/VFA7-D/VFA779Q.Seq.d/                        355   2e-97
SSM821 (SSM821Q) /CSM/SS/SSM8-A/SSM821Q.Seq.d/                        355   2e-97
SSM203 (SSM203Q) /CSM/SS/SSM2-A/SSM203Q.Seq.d/                        355   2e-97
SSI632 (SSI632Q) /CSM/SS/SSI6-B/SSI632Q.Seq.d/                        355   2e-97
SSG603 (SSG603Q) /CSM/SS/SSG6-A/SSG603Q.Seq.d/                        355   2e-97

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

D13973|D13973.1 Dictyostelium discoideum DNA for Dp87 protein, complete cds.   355   2e-94  2
CF609077|CF609077.1 GERMO01_000801 Grape Shoot pSPORT1 Library Vitis vinifera cDNA 5', mRNA sequence.    32   0.94   2
CC251485|CC251485.1 CH261-187N16_Sp6.1 CH261 Gallus gallus genomic clone CH261-187N16, DNA sequence.    32   2.6    2
AL591952|AL591952.9 Mouse DNA sequence from clone RP23-25N17 on chromosome 15.    42   2.9    1
AC092893|AC092893.4 Homo sapiens chromosome 3 clone RP11-203I19, WORKING DRAFT SEQUENCE, 28 unordered pieces.    42   2.9    1
AC108688|AC108688.5 Homo sapiens 3 BAC RP11-775J23 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    42   2.9    1
CQ611525|CQ611525.1 Sequence 39283 from Patent WO0171042.          42   2.9    1
BY189497|BY189497.1 Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630305B15, 5' end partial sequence.    42   2.9    1
AC020024|AC020024.1 Drosophila melanogaster, *** SEQUENCING IN PROGRESS ***, in ordered pieces.    42   2.9    1
AC099030|AC099030.1 Drosophila melanogaster, chromosome 2R, region 53F-54X, BAC clone BACR09M08, complete sequence.    42   2.9    1

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 122,797,744

 psg: 0.75  gvh: 0.52  alm: 0.61  top: 0.53  tms: 0.00  mit: 0.38  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: mitochondrial
	 32.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: cytoskeletal

>> prediction for CFC883 is mit

>CFC883Z.Seq
----------ATAGTAGTGCTGCTTCCTCAGCCGATAGTAGCGCTGCCTCCTCATCNCCA
TCAAGCAGTGCTGCTTCAAGTNCCGCTTCAAGTGAACCATCAAGTAGCGCCGCTTCAAAT
AGTGCTCCATCCTCTGCTTCAAGTAGCGCTCCATCCTCTGCCTCAAGTAGTGCTCCATCA
TCATCAGCTTCAAGTTCAGGCNGCANTCATCA