AFE435
Library AF
(Link to library)
Clone ID AFE435
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10672-1
Original site URL
Representative seq. ID AFE435P
(Link to Original site)
Representative DNA sequence
>AFE435 (AFE435Q) /CSM/AF/AFE4-B/AFE435Q.Seq.d/
AGTTAATTTTATTTGTAAATATAAAAAAAAAATGGAATCTTTAAAAAACAATGGTGAAAA
AATTGAAAATTTTTTAAATCAATTAAAAAATCTTCAATCAAATGTAGACAAAGATTTTAA
AGAATTTTCAAATTCTCCAAATACTTTAAATGCTGAAAAAGATGGAGAGTTTCTTGATAA
ACATGATGAAGAATTATACAACAAACAAATAATTCGTTCAAGACTAGAAGATAAAATTTC
AAATTTAAGTTCTTCTATGATTAATGATATTGGGAATGATTTTCAAACTGGTTTTCAAAC
AATTCTATACAATTTACCAGGNGTTGGTCCAGTTTTCCAAATGATCTTTAATATTATGGG
TAATGGTATAAATTTAGAAAAATTTTACCAAGAAATCATTACNCAAGTAGAACAAATGAT
TAAAAAATCATTAGAAGATTATTATAAAAACCAATGTAATACAATTTTTAAAAATTTAGG
AAAAGCATGTGATCAACATAAAGATCTAACTCAAAAATGGTATGATAAAAATGGTATCAA
ATCAATGAACCATTTAGGTAAAGAAATTCCACAATCAACATCATCCACAATTGAATCTGA
TGATACATTAACTCCAATGATACATGCAAGTTATCTAGATTTAAAAATXXXXXXXXXXTT
CAAGAAGGTTATTGGATAACATATCCACCACCAATTTATAAGGTTTGGGTTCCACCACAA
CAAGCATCGTGGGTATCTCCTCCTGCCTCGGAATTGGCACATAAATTCTTTTTGGCCCAT
TCTGACAATTATCCTCAAGGTGGTGATCTAATTTATATTAAAAAAGATGGAGTTTATGAA
CTTAGTCCAAATAAAATAACTCATGCCCTTGAAGTTTATTATAGCTCTGGGGGTGGATAT
GGTGTTAATGACTATCCAAGTTTTCGTTATGGTGGAAAACCAATCATACCTCTTCTCGCT
CCAGTTGGTAATGCTGTGTTTACAATGTTAAATCCAAATCGTTATAAAAGAACCTTTAAA
ATTAGAATTGTTCATGTCATTGTTAGAGAAGCCAAATGGAATTTAGATTGCTATGATAAT
CAAGTTGGGGAAGCAGGTTCATTTAACCAAAATTTTGTTTTCACTTCAACTAATATAGTT
TCTGACCCAATTTGTGGGAATATTGGAACTGTTGGTATCACTGAAATTCCAGGACCATTT
ACAACTGATAAAAAGTATATTAGATTAACATGCATTCGTAAAGTAAATTTCCCAGCATCA
AAAAATGAAGGATATGCCGTTGGATCTCGTATTTTATCAGTACAATTAATTATTTATAAC
CACTTCAATAAAATNATTTTCATTTAAAATATTG
sequence update 2001. 6. 1
Translated Amino Acid sequence
VNFICKYKKKMESLKNNGEKIENFLNQLKNLQSNVDKDFKEFSNSPNTLNAEKDGEFLDK
HDEELYNKQIIRSRLEDKISNLSSSMINDIGNDFQTGFQTILYNLPGVGPVFQMIFNIMG
NGINLEKFYQEIITQVEQMIKKSLEDYYKNQCNTIFKNLGKACDQHKDLTQKWYDKNGIK
SMNHLGKEIPQSTSSTIESDDTLTPMIHASYLDLK---

---QEGYWITYPPPIYKVWVPPQQASWVSPPASELAHKFFLAHSDNYPQGGDLIYIKKDG
VYELSPNKITHALEVYYSSGGGYGVNDYPSFRYGGKPIIPLLAPVGNAVFTMLNPNRYKR
TFKIRIVHVIVREAKWNLDCYDNQVGEAGSFNQNFVFTSTNIVSDPICGNIGTVGITEIP
GPFTTDKKYIRLTCIRKVNFPASKNEGYAVGSRILSVQLIIYNHFNKXIFI*ni


Translated Amino Acid sequence (All Frames)
Frame A:
s*fyl*i*kkngifkkqw*kn*kffksikkssikcrqrf*rifkfskyfkc*krwrvs**
t**riiqqtnnsfktrr*nfkfkffyd**ywe*fsnwfsnnsiqftrxwssfpndl*yyg
*wykfrkilprnhyxsrtnd*kiirrll*kpm*ynf*kfrksm*st*rsnskmv**kwyq
inepfr*rnstiniihn*i**yinsndtcklsrfkn---

---fkkvig*hihhqfirfgfhhnkhrgylllprnwhinsfwpiltiilkvvi*filkkm
efmnlvqik*lmplkfiialgvdmvlmtiqvfvmvenqsylfslqlvmlclqc*iqivik
eplklelfmsllekpngi*iamiiklgkqvhltkilfslqli*fltqfvgilellvslkf
qdhlqliksild*hafvk*isqhqkmkdmpldlvfyqyn*lfittsikxfsfkil

Frame B:
VNFICKYKKKMESLKNNGEKIENFLNQLKNLQSNVDKDFKEFSNSPNTLNAEKDGEFLDK
HDEELYNKQIIRSRLEDKISNLSSSMINDIGNDFQTGFQTILYNLPGVGPVFQMIFNIMG
NGINLEKFYQEIITQVEQMIKKSLEDYYKNQCNTIFKNLGKACDQHKDLTQKWYDKNGIK
SMNHLGKEIPQSTSSTIESDDTLTPMIHASYLDLK---

---srrlldnisttnl*glgstttsivgissclgigt*ilfgpf*qlssrw*snly*krw
sl*t*sk*nnscp*sll*lwgwiwc**lskfslwwktnhtssrssw*ccvynvksksl*k
nl*n*ncschc*rsqmefrll**sswgsrfi*pkfcfhfn*ysf*pnlweywncwyh*ns
rtiyn**kvy*inmhs*skfpsikk*ricrwisyfistinyl*plq*nxfhlky

Frame C:
lilfvnikkkwnl*ktmvkklkif*in*kifnqm*tkilknfqilqil*mlkkmesflin
mmknyttnk*fvqd*kikfqi*vll*lmilgmifklvfkqfytiyqxlvqfsk*slilwv
mv*i*knftkkslxk*nk*lknh*kiiiktnviqflki*ekhviniki*lkngmikmvsn
q*ti*vkkfhnqhhpqlnlmih*lq*ymqvi*i*k---

---QEGYWITYPPPIYKVWVPPQQASWVSPPASELAHKFFLAHSDNYPQGGDLIYIKKDG
VYELSPNKITHALEVYYSSGGGYGVNDYPSFRYGGKPIIPLLAPVGNAVFTMLNPNRYKR
TFKIRIVHVIVREAKWNLDCYDNQVGEAGSFNQNFVFTSTNIVSDPICGNIGTVGITEIP
GPFTTDKKYIRLTCIRKVNFPASKNEGYAVGSRILSVQLIIYNHFNKXIFI*ni

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFE435 (AFE435Q) /CSM/AF/AFE4-B/AFE435Q.Seq.d/ 2426 0.0
AFK522 (AFK522Q) /CSM/AF/AFK5-A/AFK522Q.Seq.d/ 1374 0.0
CHD481 (CHD481Q) /CSM/CH/CHD4-D/CHD481Q.Seq.d/ 1372 0.0
VFI666 (VFI666Q) /CSM/VF/VFI6-C/VFI666Q.Seq.d/ 1368 0.0
AFO392 (AFO392Q) /CSM/AF/AFO3-D/AFO392Q.Seq.d/ 1364 0.0
AFH818 (AFH818Q) /CSM/AF/AFH8-A/AFH818Q.Seq.d/ 1364 0.0
AFN550 (AFN550Q) /CSM/AF/AFN5-C/AFN550Q.Seq.d/ 1362 0.0
AFN784 (AFN784Q) /CSM/AF/AFN7-D/AFN784Q.Seq.d/ 1360 0.0
AFM788 (AFM788Q) /CSM/AF/AFM7-D/AFM788Q.Seq.d/ 1360 0.0
AFH880 (AFH880Q) /CSM/AF/AFH8-D/AFH880Q.Seq.d/ 1360 0.0

own update 2009. 4. 3
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC117072|AC117072.3 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence. 1211 0.0 15
M15968|M15968.1 D.discoideum M3R gene, exons 1-3. 567 0.0 3
M15967|M15967.1 D.discoideum M3L gene, exons 1-3. 262 0.0 4
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 38 1e-10 23
AB063521|AB063521.2 Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis DNA, complete genome, section 1/2. 34 7e-08 20
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 36 1e-07 28
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome. 34 4e-07 20
AF303741|AF303741.1 Chilo iridescent virus complete genome. 32 4e-07 18
BX842642|BX842642.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete sequence; segment 1/4. 36 8e-07 19
AL034557|AL034557.8 Plasmodium falciparum MAL4P1. 36 2e-06 17
dna update 2004. 4.21
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P11872) RecName: Full=cAMP-regulated M3R protein; AltName: Full... 432 e-119
AC117072_17(AC117072|pid:none) Dictyostelium discoideum chromoso... 299 1e-79
AE014187_536(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 48 9e-04
EF158087_1(EF158087|pid:none) Plasmodium falciparum erythrocyte ... 46 0.003
AE014186_384(AE014186|pid:none) Plasmodium falciparum 3D7 chromo... 45 0.007
CR380952_40(CR380952|pid:none) Candida glabrata strain CBS138 ch... 43 0.022
AE001362_223(AE001362|pid:none) Plasmodium falciparum 3D7 chromo... 40 0.14
AL035477_4(AL035477|pid:none) Plasmodium falciparum MAL4P4. &AL... 40 0.14
AL034559_35(AL034559|pid:none) Plasmodium falciparum MAL3P7, com... 40 0.14
CP000879_149(CP000879|pid:none) Petrotoga mobilis SJ95, complete... 40 0.18
protein update 2009. 4.17
PSORT

psg: 0.56 gvh: 0.29 alm: 0.35 top: 0.53 tms: 0.00 mit: 0.18 mip: 0.00
nuc: 0.04 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
40.0 %: nuclear
8.0 %: mitochondrial
4.0 %: extracellular, including cell wall
4.0 %: cytoskeletal
4.0 %: plasma membrane

>> prediction for AFE435 is cyt

5' end seq. ID AFE435F
5' end seq.
>AFE435F.Seq
AGTTAATTTTATTTGTAAATATAAAAAAAAAATGGAATCTTTAAAAAACAATGGTGAAAA
AATTGAAAATTTTTTAAATCAATTAAAAAATCTTCAATCAAATGTAGACAAAGATTTTAA
AGAATTTTCAAATTCTCCAAATACTTTAAATGCTGAAAAAGATGGAGAGTTTCTTGATAA
ACATGATGAAGAATTATACAACAAACAAATAATTCGTTCAAGACTAGAAGATAAAATTTC
AAATTTAAGTTCTTCTATGATTAATGATATTGGGAATGATTTTCAAACTGGTTTTCAAAC
AATTCTATACAATTTACCAGGNGTTGGTCCAGTTTTCCAAATGATCTTTAATATTATGGG
TAATGGTATAAATTTAGAAAAATTTTACCAAGAAATCATTACNCAAGTAGAACAAATGAT
TAAAAAATCATTAGAAGATTATTATAAAAACCAATGTAATACAATTTTTAAAAATTTAGG
AAAAGCATGTGATCAACATAAAGATCTAACTCAAAAATGGTATGATAAAAATGGTATCAA
ATCAATGAACCATTTAGGTAAAGAAATTCCACAATCAACATCATCCACAATTGAATCTGA
TGATACATTAACTCCAATGATACATGCAAGTTATCTAGATTTAAAAAT----------
Length of 5' end seq. 648
3' end seq. ID AFE435Z
3' end seq.
>AFE435Z.Seq
----------TTCAAGAAGGTTATTGGATAACATATCCACCACCAATTTATAAGGTTTGG
GTTCCACCACAACAAGCATCGTGGGTATCTCCTCCTGCCTCGGAATTGGCACATAAATTC
TTTTTGGCCCATTCTGACAATTATCCTCAAGGTGGTGATCTAATTTATATTAAAAAAGAT
GGAGTTTATGAACTTAGTCCAAATAAAATAACTCATGCCCTTGAAGTTTATTATAGCTCT
GGGGGTGGATATGGTGTTAATGACTATCCAAGTTTTCGTTATGGTGGAAAACCAATCATA
CCTCTTCTCGCTCCAGTTGGTAATGCTGTGTTTACAATGTTAAATCCAAATCGTTATAAA
AGAACCTTTAAAATTAGAATTGTTCATGTCATTGTTAGAGAAGCCAAATGGAATTTAGAT
TGCTATGATAATCAAGTTGGGGAAGCAGGTTCATTTAACCAAAATTTTGTTTTCACTTCA
ACTAATATAGTTTCTGACCCAATTTGTGGGAATATTGGAACTGTTGGTATCACTGAAATT
CCAGGACCATTTACAACTGATAAAAAGTATATTAGATTAACATGCATTCGTAAAGTAAAT
TTCCCAGCATCAAAAAATGAAGGATATGCCGTTGGATCTCGTATTTTATCAGTACAATTA
ATTATTTATAACCACTTCAATAAAATNATTTTCATTTAAAATATTG
Length of 3' end seq. 696
Connected seq. ID AFE435P
Connected seq.
>AFE435P.Seq
AGTTAATTTTATTTGTAAATATAAAAAAAAAATGGAATCTTTAAAAAACAATGGTGAAAA
AATTGAAAATTTTTTAAATCAATTAAAAAATCTTCAATCAAATGTAGACAAAGATTTTAA
AGAATTTTCAAATTCTCCAAATACTTTAAATGCTGAAAAAGATGGAGAGTTTCTTGATAA
ACATGATGAAGAATTATACAACAAACAAATAATTCGTTCAAGACTAGAAGATAAAATTTC
AAATTTAAGTTCTTCTATGATTAATGATATTGGGAATGATTTTCAAACTGGTTTTCAAAC
AATTCTATACAATTTACCAGGNGTTGGTCCAGTTTTCCAAATGATCTTTAATATTATGGG
TAATGGTATAAATTTAGAAAAATTTTACCAAGAAATCATTACNCAAGTAGAACAAATGAT
TAAAAAATCATTAGAAGATTATTATAAAAACCAATGTAATACAATTTTTAAAAATTTAGG
AAAAGCATGTGATCAACATAAAGATCTAACTCAAAAATGGTATGATAAAAATGGTATCAA
ATCAATGAACCATTTAGGTAAAGAAATTCCACAATCAACATCATCCACAATTGAATCTGA
TGATACATTAACTCCAATGATACATGCAAGTTATCTAGATTTAAAAAT----------TT
CAAGAAGGTTATTGGATAACATATCCACCACCAATTTATAAGGTTTGGGTTCCACCACAA
CAAGCATCGTGGGTATCTCCTCCTGCCTCGGAATTGGCACATAAATTCTTTTTGGCCCAT
TCTGACAATTATCCTCAAGGTGGTGATCTAATTTATATTAAAAAAGATGGAGTTTATGAA
CTTAGTCCAAATAAAATAACTCATGCCCTTGAAGTTTATTATAGCTCTGGGGGTGGATAT
GGTGTTAATGACTATCCAAGTTTTCGTTATGGTGGAAAACCAATCATACCTCTTCTCGCT
CCAGTTGGTAATGCTGTGTTTACAATGTTAAATCCAAATCGTTATAAAAGAACCTTTAAA
ATTAGAATTGTTCATGTCATTGTTAGAGAAGCCAAATGGAATTTAGATTGCTATGATAAT
CAAGTTGGGGAAGCAGGTTCATTTAACCAAAATTTTGTTTTCACTTCAACTAATATAGTT
TCTGACCCAATTTGTGGGAATATTGGAACTGTTGGTATCACTGAAATTCCAGGACCATTT
ACAACTGATAAAAAGTATATTAGATTAACATGCATTCGTAAAGTAAATTTCCCAGCATCA
AAAAATGAAGGATATGCCGTTGGATCTCGTATTTTATCAGTACAATTAATTATTTATAAC
CACTTCAATAAAATNATTTTCATTTAAAATATTG
Length of connected seq. 1344
Full length Seq ID -
Full length Seq. -
Length of full length seq. -