CFC877
Library CF
(Link to library)
Clone ID CFC877
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16560-1
Original site URL
Representative seq. ID CFC877P
(Link to Original site)
Representative DNA sequence
>CFC877 (CFC877Q) /CSM/CF/CFC8-D/CFC877Q.Seq.d/
AAATTCATTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATATATTGTAACA
TTTCAAAAAAAAAAAAAAAAAAAAAAATTTAAAAANNCNCTTTTTTGNAAAAAAAAAXXX
XXXXXXXAATTTTTNTAAANNCCCNCCNCCGGTAAGACTATTACACTCGAAGTTGAAGGG
TAGTGCCAACCTTGAGAATGTAAAACCAAAGNTNCAAGATAAAGGANGGTATTCCACCAG
ATCAACAACGTNTCATTTTCGCTGGTAAACAATTAAAAGATGGTCGTACTCTCTTCTGAT
TACAATATCCAAAAAAGAATCAACTCTCCACTTGGTCCTCAGATTAAGAGGTGGTATGCA
AATCTTTGTCAAAACATTAACTGGTAAGACCATCACTCTTGAAGTTGAGGGCTCAGATAA
TATTGAAAATGTTAAAACAAAGATTCAAGACAAAGAAGGTATCCCACCAGACCAACAAAG
ATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAACATTCA
AAAGGAATCCACTCTCCATTTAGTCCTCAGATTAAGAGGTGGTATGCAAATTTTTGTCAA
AACCCTCACTGGTAAGACTATTACACTCGAAGTTGAAGGTTCTGATAACATTGAGAATGT
TAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTCGC
CGGTAAACAATTGGAGGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCAC
TCTCCATTTAGTTCTCAGATTAAGAGGTGGTATGCAAATTTTTGTAAAAACTCTCACTGG
TAAAACCATTACACTCGAAGTTGAAGGTAGTGACAACATTGAGAATGTAAAAACAAAAAT
TCAAGACAAAGAAGGTATCCCACC
sequence update 2001. 6. 1
Translated Amino Acid sequence
KFIFIIQILNSYFIFLYIVTFQKKKKKKKFKXXLFXKKK---

---NFXKXPPPVRLLHSKLKGSANLENVKPKXQDKGXYSTRSTTXHFRW*tikrwsysll
itiskkestlhlvlrlrggmqifvktltgktitlevegsdnienvktkiqdkegippdqq
rlifagkqledgrtlsdyniqkestlhlvlrlrggmqifvktltgktitlevegsdnien
vkakiqdkegippdqqrlifagkqledgrtlsdyniqkestlhlvlrlrggmqifvktlt
gktitlevegsdnienvktkiqdkegip


Translated Amino Acid sequence (All Frames)
Frame A:
KFIFIIQILNSYFIFLYIVTFQKKKKKKKFKXXLFXKKK---

---NFXKXPPPVRLLHSKLKGSANLENVKPKXQDKGXYSTRSTTXHFRW*tikrwsysll
itiskkestlhlvlrlrggmqifvktltgktitlevegsdnienvktkiqdkegippdqq
rlifagkqledgrtlsdyniqkestlhlvlrlrggmqifvktltgktitlevegsdnien
vkakiqdkegippdqqrlifagkqledgrtlsdyniqkestlhlvlrlrggmqifvktlt
gktitlevegsdnienvktkiqdkegip

Frame B:
nsfllyky*ihilffyil*hfkkkkkkknlkxxffxkk---

---ifxxxxxr*dyytrs*rvvptlrm*nqxxkikxgippdqqrxifagkqlkdgrtlf*
lqypkknqlstwssd*evvckslskh*lvrpsllklraqiilkmlkqrfktkkvshqtnk
d*fslvnn*kmvvlslittfkrnplsi*ssd*evvckflskpslvrllhsklkvlitlrm
lkpksktkkvfhqinnvsfspvnnwrmvvlslittfkrnplsi*fsd*evvckfl*klsl
vkplhsklkvvttlrm*kqkfktkkvsh

Frame C:
ihfyytnikfifyffiycniskkkkkkki*kxxflxkk---

---fx*xpxxgktitleveg*cqp*ecktkxxr*rxvfhqinnvsfslvnn*kmvvlssd
yniqkrinsplgpqikrwyanlcqninw*dhhs*s*glr*y*kc*nkdsrqrryptrptk
infrw*tirrwsysl*lqhskgihspfspqikrwyanfcqnphw*dyytrs*rf**h*ec
*sqnprqrrystrsttshfrr*tiggwsysl*lqhskgihspfssqikrwyanfcknshw
*nhytrs*r**qh*ecknknsrqrrypt

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFC877 (CFC877Q) /CSM/CF/CFC8-D/CFC877Q.Seq.d/ 1516 0.0
CFA841 (CFA841Q) /CSM/CF/CFA8-B/CFA841Q.Seq.d/ 1423 0.0
CFC756 (CFC756Q) /CSM/CF/CFC7-C/CFC756Q.Seq.d/ 1419 0.0
AFE596 (AFE596Q) /CSM/AF/AFE5-D/AFE596Q.Seq.d/ 1407 0.0
SFD191 (SFD191Q) /CSM/SF/SFD1-D/SFD191Q.Seq.d/ 1403 0.0
SFG820 (SFG820Q) /CSM/SF/SFG8-A/SFG820Q.Seq.d/ 1402 0.0
CFF858 (CFF858Q) /CSM/CF/CFF8-C/CFF858Q.Seq.d/ 1402 0.0
CFC211 (CFC211Q) /CSM/CF/CFC2-A/CFC211Q.Seq.d/ 1402 0.0
CFK168 (CFK168Q) /CSM/CF/CFK1-C/CFK168Q.Seq.d/ 1400 0.0
CFI842 (CFI842Q) /CSM/CF/CFI8-B/CFI842Q.Seq.d/ 1400 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

M19491|M19491.1 Slime mold (D.discoideum) ubiquitin p229C/pLK229 gene, complete cds. 1207 0.0 5
M23748|M23748.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB19. 1191 0.0 5
M19666|M19666.1 Slime mold (D.discoideum) ubiquitin gene, 3' end, clone p229C. 1191 0.0 5
M23753|M23753.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB14. 692 0.0 3
M23754|M23754.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB2. 676 0.0 3
M19492|M19492.1 Slime mold (D.discoideum) ubiquitin lambda-229 gene, complete cds. 660 0.0 3
M23752|M23752.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB17. 539 e-180 3
M23751|M23751.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB18. 539 e-180 3
BJ541175|BJ541175.1 Oryzias latipes cDNA clone:MF01SSB034A18, 3' end single read. 176 e-106 6
BJ528884|BJ528884.1 Oryzias latipes cDNA clone:MF01SSB034A18, 5' end single read. 192 e-104 5
dna update 2004. 3. 3
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

A27806(A27806) polyubiquitin 5 (clone pLK229) - slime mold (Dict... 404 e-111
M19666_1(M19666|pid:none) Slime mold (D.discoideum) ubiquitin ge... 404 e-111
B34080(B34080)polyubiquitin 5 (clone DCUB19) - slime mold (Dicty... 404 e-111
M23754_1(M23754|pid:none) D.discoideum ubiquitin mRNA, complete ... 400 e-110
CR954212_116(CR954212|pid:none) Ostreococcus tauri strain OTTH05... 372 e-108
M17597_1(M17597|pid:none) Human poly-ubiquitin mRNA, complete cds. 376 e-108
Z28649_1(Z28649|pid:none) Acetabularia cliftonii gene for polyub... 379 e-107
AY957885_1(AY957885|pid:none) Gracilaria lemaneiformis polyubiqu... 384 e-105
AJ965271_1(AJ965271|pid:none) Polyplastron multivesiculatum part... 368 e-105
AF088848_1(AF088848|pid:none) Capsicum chinense polyubiquitin (U... 374 e-105
protein update 2009. 5.12
PSORT

psg: 0.96 gvh: 0.36 alm: 0.26 top: 1.00 tms: 0.07 mit: 0.33 mip: 0.09
nuc: 0.47 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.06 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 1.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

48.0 %: nuclear
28.0 %: cytoplasmic
8.0 %: mitochondrial
8.0 %: Golgi
4.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for CFC877 is nuc

5' end seq. ID CFC877F
5' end seq.
>CFC877F.Seq
AAATTCATTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATATATTGTAACA
TTTCAAAAAAAAAAAAAAAAAAAAAAATTTAAAAANNCNCTTTTTTGNAAAAAAAAA---
-------
Length of 5' end seq. 117
3' end seq. ID CFC877Z
3' end seq.
>CFC877Z.Seq
----------AATTTTTNTAAANNCCCNCCNCCGGTAAGACTATTACACTCGAAGTTGAA
GGGTAGTGCCAACCTTGAGAATGTAAAACCAAAGNTNCAAGATAAAGGANGGTATTCCAC
CAGATCAACAACGTNTCATTTTCGCTGGTAAACAATTAAAAGATGGTCGTACTCTCTTCT
GATTACAATATCCAAAAAAGAATCAACTCTCCACTTGGTCCTCAGATTAAGAGGTGGTAT
GCAAATCTTTGTCAAAACATTAACTGGTAAGACCATCACTCTTGAAGTTGAGGGCTCAGA
TAATATTGAAAATGTTAAAACAAAGATTCAAGACAAAGAAGGTATCCCACCAGACCAACA
AAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAACAT
TCAAAAGGAATCCACTCTCCATTTAGTCCTCAGATTAAGAGGTGGTATGCAAATTTTTGT
CAAAACCCTCACTGGTAAGACTATTACACTCGAAGTTGAAGGTTCTGATAACATTGAGAA
TGTTAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTT
CGCCGGTAAACAATTGGAGGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATC
CACTCTCCATTTAGTTCTCAGATTAAGAGGTGGTATGCAAATTTTTGTAAAAACTCTCAC
TGGTAAAACCATTACACTCGAAGTTGAAGGTAGTGACAACATTGAGAATGTAAAAACAAA
AATTCAAGACAAAGAAGGTATCCCACC
Length of 3' end seq. 797
Connected seq. ID CFC877P
Connected seq.
>CFC877P.Seq
AAATTCATTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATATATTGTAACA
TTTCAAAAAAAAAAAAAAAAAAAAAAATTTAAAAANNCNCTTTTTTGNAAAAAAAAA---
-------AATTTTTNTAAANNCCCNCCNCCGGTAAGACTATTACACTCGAAGTTGAAGGG
TAGTGCCAACCTTGAGAATGTAAAACCAAAGNTNCAAGATAAAGGANGGTATTCCACCAG
ATCAACAACGTNTCATTTTCGCTGGTAAACAATTAAAAGATGGTCGTACTCTCTTCTGAT
TACAATATCCAAAAAAGAATCAACTCTCCACTTGGTCCTCAGATTAAGAGGTGGTATGCA
AATCTTTGTCAAAACATTAACTGGTAAGACCATCACTCTTGAAGTTGAGGGCTCAGATAA
TATTGAAAATGTTAAAACAAAGATTCAAGACAAAGAAGGTATCCCACCAGACCAACAAAG
ATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAACATTCA
AAAGGAATCCACTCTCCATTTAGTCCTCAGATTAAGAGGTGGTATGCAAATTTTTGTCAA
AACCCTCACTGGTAAGACTATTACACTCGAAGTTGAAGGTTCTGATAACATTGAGAATGT
TAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTCGC
CGGTAAACAATTGGAGGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCAC
TCTCCATTTAGTTCTCAGATTAAGAGGTGGTATGCAAATTTTTGTAAAAACTCTCACTGG
TAAAACCATTACACTCGAAGTTGAAGGTAGTGACAACATTGAGAATGTAAAAACAAAAAT
TCAAGACAAAGAAGGTATCCCACC
Length of connected seq. 914
Full length Seq ID -
Full length Seq. -
Length of full length seq. -