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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFC872
Library CF
(Link to library)
Clone ID CFC872
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16524-1
Original site URL
Representative seq. ID CFC872P
(Link to Original site)
Representative DNA sequence 
>CFC872 (CFC872Q) /CSM/CF/CFC8-C/CFC872Q.Seq.d/
CACTGTTGGCCTACTGGAACTCAGTAATAATAATAATAAAAATAATAACAATAATAAGGA
ATTATAATCAAATAATAATATAGCTATAATCTATAATTACTATAGTAAAATTACGTATAC
ATATATAAATAATTATTATTATCATTGTTTTTAAAAATAAATAAATAAATAATAAAAAAA
AAAXXXXXXXXXXAACTCAGTAATAATAATAATNTAAATAANAGACAATAATAAGGAATT
ATTNTCAAATAATAATATAGCTATAATCTATAATTACTATAGTANAATTACGTATACATA
TATAAATAATTATTATTATCAT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
llaywnsviiiikiitiirnynqiii*l*siitivklrihi*iiiiiivfknk*INNKKK
---

---LSNNNNXNXRQ**giixk**ysynl*ll*xnyvyiyk*llls
Translated Amino Acid sequence (All Frames) 
Frame A:
hcwptgtq*****k**q**giiik**ysynl*ll**nyvyiyk*lllslflkink*iikk
k---

---nsviiix*ixdnnkelxsnnniaiiynyysxitytyinnyyyh

Frame B:
tvgllelsnnnnknnnnnkel*snnniaiiynyyskitytyinnyyyhcf*k*ink**kk
---

---tq****xk*xtiirnyxqiii*l*siitivxlrihi*iiiii

Frame C:
llaywnsviiiikiitiirnynqiii*l*siitivklrihi*iiiiiivfknk*INNKKK
---

---LSNNNNXNXRQ**giixk**ysynl*ll*xnyvyiyk*llls
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFC872 (CFC872Q) /CSM/CF/CFC8-C/CFC872Q.Seq.d/                         88   9e-17
CFE872 (CFE872Q) /CSM/CF/CFE8-C/CFE872Q.Seq.d/                         78   9e-14
CHQ786 (CHQ786Q) /CSM/CH/CHQ7-D/CHQ786Q.Seq.d/                         64   1e-09
CFK490 (CFK490Q) /CSM/CF/CFK4-D/CFK490Q.Seq.d/                         64   1e-09
SHK252 (SHK252Q) /CSM/SH/SHK2-C/SHK252Q.Seq.d/                         62   5e-09
SHK107 (SHK107Q) /CSM/SH/SHK1-A/SHK107Q.Seq.d/                         62   5e-09
SHI766 (SHI766Q) /CSM/SH/SHI7-C/SHI766Q.Seq.d/                         62   5e-09
SHI480 (SHI480Q) /CSM/SH/SHI4-D/SHI480Q.Seq.d/                         62   5e-09
SHI265 (SHI265Q) /CSM/SH/SHI2-C/SHI265Q.Seq.d/                         62   5e-09
SHH479 (SHH479Q) /CSM/SH/SHH4-D/SHH479Q.Seq.d/                         62   5e-09
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL982335|AL982335.1 Danio rerio genomic clone DKEY-68I3, genomic survey sequence.    44   6e-07  3
S96842|S96842.1 SP96=spore-coat protein {5' region} [Dictyostelium discoideum, prespore cells, Genomic, 2305 nt].    48   2e-05  2
M34548|M34548.1 D.discoideum spore coat 96 (sp96) gene, 5' flank.    48   2e-05  2
AL844505|AL844505.1 Plasmodium falciparum chromosome  6.           40   6e-05  5
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.           36   4e-04  6
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           40   6e-04  6
BX218686|BX218686.1 Danio rerio genomic clone DKEY-273K20, genomic survey sequence.    30   7e-04  4
AE014840|AE014840.1 Plasmodium falciparum 3D7 chromosome 11 section 5 of 8 of the complete sequence.    38   0.001  6
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    48   0.001  6
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    40   0.002  4
dna update 2004. 3. 3
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 112,790,661
protein update 2009. 5.12
PSORT -
5' end seq. ID CFC872F
5' end seq. 
>CFC872F.Seq
CACTGTTGGCCTACTGGAACTCAGTAATAATAATAATAAAAATAATAACAATAATAAGGA
ATTATAATCAAATAATAATATAGCTATAATCTATAATTACTATAGTAAAATTACGTATAC
ATATATAAATAATTATTATTATCATTGTTTTTAAAAATAAATAAATAAATAATAAAAAAA
AAA----------
Length of 5' end seq. 183
3' end seq. ID CFC872Z
3' end seq. 
>CFC872Z.Seq
----------AACTCAGTAATAATAATAATNTAAATAANAGACAATAATAAGGAATTATT
NTCAAATAATAATATAGCTATAATCTATAATTACTATAGTANAATTACGTATACATATAT
AAATAATTATTATTATCAT
Length of 3' end seq. 129
Connected seq. ID CFC872P
Connected seq. 
>CFC872P.Seq
CACTGTTGGCCTACTGGAACTCAGTAATAATAATAATAAAAATAATAACAATAATAAGGA
ATTATAATCAAATAATAATATAGCTATAATCTATAATTACTATAGTAAAATTACGTATAC
ATATATAAATAATTATTATTATCATTGTTTTTAAAAATAAATAAATAAATAATAAAAAAA
AAA----------AACTCAGTAATAATAATAATNTAAATAANAGACAATAATAAGGAATT
ATTNTCAAATAATAATATAGCTATAATCTATAATTACTATAGTANAATTACGTATACATA
TATAAATAATTATTATTATCAT
Length of connected seq. 312
Full length Seq ID -
Full length Seq. -
Length of full length seq. -