NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFC857
Library CF
(Link to library)
Clone ID CFC857
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15579-1
Original site URL
Representative seq. ID CFC857P
(Link to Original site)
Representative DNA sequence 
>CFC857 (CFC857Q) /CSM/CF/CFC8-C/CFC857Q.Seq.d/
GTTTCATATGAACATTTAATAAATAAAACACAATAAAAATCAATATTATTTATATATTTA
TAGTAACATTATATGAATATTTAAAAATTGGAAAACATTTTTTAAAAATTGGAAAACATT
ATTAAAAAAAGAAATAAATTGATTTTTAATTATAAAAAAAAAAXXXXXXXXXXGTCCAGA
TAATAATTACCAATGTGAATTTGTTGATAAGATATGTAACNCTACTAATGACAAATGTTT
AGTAGAATCTTGTGAAATAGGTTTTGGTTGTCTTGCAATTCCAAAAAATTGTAATGATAA
TGATCCATGTACCACTGATCATTGTGATCCAGCTATAGGTTGTTATTATGATAAGTTTGA
TAATTGTGATGCATGTAATGCTGTAGATACTTGTATTACAAATGATTTATGCTTCCCAAG
GGAATGTAATCCAAGAGGGAACCCACCTTGTTTAATAAACCCTATTAATTGTACAAGCAC
TGATCCATGCATTTTTTCATATTGTGAAAATGGTGTATGTATTCCAACATACATTTGTAC
TCCAACTCCATCTGTAACTCCAACTGTTACCCCAACTGTTACTCCAACTGTTACCCCAAC
TGTTACACCAACCGTTACTCCAACCGTTACCCCAACTCCAACTACAACTCCAATA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
vsyehlinktq*ksilfiyl**hymni*klenif*KLENIIKKRNKLIFNYKKK---

---PDNNYQCEFVDKICNXTNDKCLVESCEIGFGCLAIPKNCNDNDPCTTDHCDPAIGCY
YDKFDNCDACNAVDTCITNDLCFPRECNPRGNPPCLINPINCTSTDPCIFSYCENGVCIP
TYICTPTPSVTPTVTPTVTPTVTPTVTPTVTPTVTPTPTTTPI
Translated Amino Acid sequence (All Frames) 
Frame A:
vsyehlinktq*ksilfiyl**hymni*klenif*KLENIIKKRNKLIFNYKKK---

---vqiiitnvnlliryvtllmtnv**nlvk*vlvvlqfqkivmimihvpliiviql*vv
imisliivmhvml*ilvlqmiyasqgnviqegthlv**tllivqalihaffhivkmvyvf
qhtfvlqlhl*lqllpqlllqllpqllhqpllqplpqlqlqlq

Frame B:
fhmni**ikhnknqyylyiysnii*ifknwktffknwktllkkein*fliikkk---

---sr**lpm*ic**dm*xy**qmfsril*nrfwlscnskkl****smyh*sl*ssyrll
l**v**l*cm*ccrylyyk*fmlpkgm*skreptlfnkpy*lykh*smhffil*kwcmys
nihlysnsicnsncypncysncypncytnrysnrypnsnynsn

Frame C:
fi*tfnk*ntikiniiyifivtlyeylkigkhflkigkhy*kkk*idf*l*kk---

---PDNNYQCEFVDKICNXTNDKCLVESCEIGFGCLAIPKNCNDNDPCTTDHCDPAIGCY
YDKFDNCDACNAVDTCITNDLCFPRECNPRGNPPCLINPINCTSTDPCIFSYCENGVCIP
TYICTPTPSVTPTVTPTVTPTVTPTVTPTVTPTVTPTPTTTPI
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFC857 (CFC857Q) /CSM/CF/CFC8-C/CFC857Q.Seq.d/                        950   0.0
CHD753 (CHD753Q) /CSM/CH/CHD7-C/CHD753Q.Seq.d/                        946   0.0
CFF487 (CFF487Q) /CSM/CF/CFF4-D/CFF487Q.Seq.d/                        946   0.0
CHH341 (CHH341Q) /CSM/CH/CHH3-B/CHH341Q.Seq.d/                        940   0.0
CHB474 (CHB474Q) /CSM/CH/CHB4-D/CHB474Q.Seq.d/                        940   0.0
SHF881 (SHF881Q) /CSM/SH/SHF8-D/SHF881Q.Seq.d/                        904   0.0
CHB332 (CHB332Q) /CSM/CH/CHB3-B/CHB332Q.Seq.d/                        898   0.0
CHB286 (CHB286Q) /CSM/CH/CHB2-D/CHB286Q.Seq.d/                        894   0.0
CFB225 (CFB225Q) /CSM/CF/CFB2-B/CFB225Q.Seq.d/                        894   0.0
CHQ213 (CHQ213Q) /CSM/CH/CHQ2-A/CHQ213Q.Seq.d/                        892   0.0
own update 2002. 9.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           42   3e-06  14
AC006279|AC006279.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    38   6e-06  9
CK261949|CK261949.1 EST708027 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POABD21 5' end, mRNA sequence.    40   1e-05  3
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    36   2e-05  15
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.            44   4e-05  19
AC005507|AC005507.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    36   9e-05  10
AE014849|AE014849.1 Plasmodium falciparum 3D7 chromosome 12, section 6 of 9 of the complete sequence.    36   4e-04  11
AL844505|AL844505.1 Plasmodium falciparum chromosome  6.           36   4e-04  14
AL031745|AL031745.8 Plasmodium falciparum DNA from MAL1P2.         34   5e-04  14
CE707845|CE707845.1 tigr-gss-dog-17000369256437 Dog Library Canis familiaris genomic, genomic survey sequence.    40   7e-04  2
dna update 2004. 3. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54FD8) RecName: Full=Protein psiD; Flags: Precursor;                284   1e-75
(Q1ZXC5) RecName: Full=Protein psiC; Flags: Precursor;                108   2e-22
(Q54C31) RecName: Full=Protein psiR; Flags: Precursor;                 77   3e-13
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor;                 75   2e-12
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor;                 74   5e-12
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor;                 72   2e-11
AC117072_61(AC117072|pid:none) Dictyostelium discoideum chromoso...    70   4e-11
S44208(S44208) extracellular matrix protein B - Dictyostelium mi...    67   3e-10
A26838(A26838)prestalk protein precursor - slime mold (Dictyoste...    64   3e-09
(P11976) RecName: Full=Prestalk protein; AltName: Full=Extracell...    64   4e-09
protein update 2009. 5.12
PSORT 

 psg: 0.52  gvh: 0.49  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.03
 nuc: 0.03  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for CFC857 is cyt
5' end seq. ID CFC857F
5' end seq. 
>CFC857F.Seq
GTTTCATATGAACATTTAATAAATAAAACACAATAAAAATCAATATTATTTATATATTTA
TAGTAACATTATATGAATATTTAAAAATTGGAAAACATTTTTTAAAAATTGGAAAACATT
ATTAAAAAAAGAAATAAATTGATTTTTAATTATAAAAAAAAAA----------
Length of 5' end seq. 163
3' end seq. ID CFC857Z
3' end seq. 
>CFC857Z.Seq
----------GTCCAGATAATAATTACCAATGTGAATTTGTTGATAAGATATGTAACNCT
ACTAATGACAAATGTTTAGTAGAATCTTGTGAAATAGGTTTTGGTTGTCTTGCAATTCCA
AAAAATTGTAATGATAATGATCCATGTACCACTGATCATTGTGATCCAGCTATAGGTTGT
TATTATGATAAGTTTGATAATTGTGATGCATGTAATGCTGTAGATACTTGTATTACAAAT
GATTTATGCTTCCCAAGGGAATGTAATCCAAGAGGGAACCCACCTTGTTTAATAAACCCT
ATTAATTGTACAAGCACTGATCCATGCATTTTTTCATATTGTGAAAATGGTGTATGTATT
CCAACATACATTTGTACTCCAACTCCATCTGTAACTCCAACTGTTACCCCAACTGTTACT
CCAACTGTTACCCCAACTGTTACACCAACCGTTACTCCAACCGTTACCCCAACTCCAACT
ACAACTCCAATA
Length of 3' end seq. 482
Connected seq. ID CFC857P
Connected seq. 
>CFC857P.Seq
GTTTCATATGAACATTTAATAAATAAAACACAATAAAAATCAATATTATTTATATATTTA
TAGTAACATTATATGAATATTTAAAAATTGGAAAACATTTTTTAAAAATTGGAAAACATT
ATTAAAAAAAGAAATAAATTGATTTTTAATTATAAAAAAAAAA----------GTCCAGA
TAATAATTACCAATGTGAATTTGTTGATAAGATATGTAACNCTACTAATGACAAATGTTT
AGTAGAATCTTGTGAAATAGGTTTTGGTTGTCTTGCAATTCCAAAAAATTGTAATGATAA
TGATCCATGTACCACTGATCATTGTGATCCAGCTATAGGTTGTTATTATGATAAGTTTGA
TAATTGTGATGCATGTAATGCTGTAGATACTTGTATTACAAATGATTTATGCTTCCCAAG
GGAATGTAATCCAAGAGGGAACCCACCTTGTTTAATAAACCCTATTAATTGTACAAGCAC
TGATCCATGCATTTTTTCATATTGTGAAAATGGTGTATGTATTCCAACATACATTTGTAC
TCCAACTCCATCTGTAACTCCAACTGTTACCCCAACTGTTACTCCAACTGTTACCCCAAC
TGTTACACCAACCGTTACTCCAACCGTTACCCCAACTCCAACTACAACTCCAATA
Length of connected seq. 645
Full length Seq ID -
Full length Seq. -
Length of full length seq. -