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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFC855
Library CF
(Link to library)
Clone ID CFC855
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16255-1
Original site URL
Representative seq. ID CFC855P
(Link to Original site)
Representative DNA sequence 
>CFC855 (CFC855Q) /CSM/CF/CFC8-C/CFC855Q.Seq.d/
TTTTGGAGTAGTTGTACACCAAGTAGTGGTTTCACAGATTTTATTCCATCCAATGCAACA
TGTTCATCATTAAATTGTAATGCTCAACAAATGAGTTGCAAATATGTTCAACAAGCATGT
CATGAAACATCATGTTGTCCTGATATTCCTCAATGTCAAATTCCTGCAACTGGCGGTGGC
CCAGCTACTGGAAGTGCACCTGGTCAAGGCACATCAGGTGGTACACCAGGTTCTTGTGAT
AAAGTTAATTGTCCAAATGGTTACATTTGTACAATAGTAAATCAATTAGCAGTATGTGTT
TCTCCATCATCCTCTTCGTCAAGTTCTTCATCAACCACTGGCTCACATACTACCACTGGT
GGTTCAACCACTGGCTCACATACTACTACTGGTGGTTCAACCACTGGCTCACATACTACT
ACTGGTGGTTCAACCACTGGCTCACATACTACTACTGGTGGTTCAACCACTGGCTCACAT
ACTACTACTGGTGGTTCAACTACTGGTCCAACATGTGGTAATGTTAACTGCCCAAGAGGT
TACCATTGTGAAGTTAGAGGTTCCCAAGCTGTTTGTGTTGCCGATGAATTTGACTCATGT
GCCAATGTTGATTGTGGTTXXXXXXXXXXCTGGCAATTACACCCAGAACATTGTGGCGGA
CGTCCAAATAAGATTAAAGTCATCTGTGTTCCATCACCAAAAGGTACTTGCAAGACTGTT
CAATGTCCAAAAGGTTACAAATGCAAACTCTATGCTGATGGTCCAACATGTGTAAAGATT
GAAAAACCAAAATGTCTCACTTGTAAAGATATGCATTGTGAGTCAAATGGATTACTCTGT
GTCTTGACTCCACAAAAGAAGACTGATGAAGAATGTTGTCCAATTATTCCAATCTGTATC
AATCCATCAACTATTGCCGCATCCACTATTGCCACTACAACTGCATCAACTCGTCACTCA
ACTGCCTCAACAATTGCCTCATTAGTCACTGGTACCACAAGTGGTGGTGGTGGTATGGGT
TCATTTGGTGGTCGATCCGATGAAGAATCAAGTGATCCAAATGCTATACTTGGTCTCTTT
GAAGACGATATTTTCTGGGGTGATAATGATGAATACTTTAGTGATAACTACCGTTATGTT
GATGAAGAAGATATTGATGAAGATTTCAATGGTAATGATGAATTTGAAATTGATGTTGAA
GGTGATTTCCAAGAAGATGATTTCGAAGAAGAATATGCATTTTATTAAATTAAACTTTTT
TTCATAAAAAAATAATAATAATAATTTAATAACTAATCATTATCATCAATAATAACATTA
TAATA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
FWSSCTPSSGFTDFIPSNATCSSLNCNAQQMSCKYVQQACHETSCCPDIPQCQIPATGGG
PATGSAPGQGTSGGTPGSCDKVNCPNGYICTIVNQLAVCVSPSSSSSSSSSTTGSHTTTG
GSTTGSHTTTGGSTTGSHTTTGGSTTGSHTTTGGSTTGSHTTTGGSTTGPTCGNVNCPRG
YHCEVRGSQAVCVADEFDSCANVDCG---

---WQLHPEHCGGRPNKIKVICVPSPKGTCKTVQCPKGYKCKLYADGPTCVKIEKPKCLT
CKDMHCESNGLLCVLTPQKKTDEECCPIIPICINPSTIAASTIATTTASTRHSTASTIAS
LVTGTTSGGGGMGSFGGRSDEESSDPNAILGLFEDDIFWGDNDEYFSDNYRYVDEEDIDE
DFNGNDEFEIDVEGDFQEDDFEEEYAFY*iklffikk****fnn*slssiitl*
Translated Amino Acid sequence (All Frames) 
Frame A:
FWSSCTPSSGFTDFIPSNATCSSLNCNAQQMSCKYVQQACHETSCCPDIPQCQIPATGGG
PATGSAPGQGTSGGTPGSCDKVNCPNGYICTIVNQLAVCVSPSSSSSSSSSTTGSHTTTG
GSTTGSHTTTGGSTTGSHTTTGGSTTGSHTTTGGSTTGSHTTTGGSTTGPTCGNVNCPRG
YHCEVRGSQAVCVADEFDSCANVDCG---

---laitprtlwrtsk*d*shlcsitkrylqdcsmskrlqmqtlc*wsnmckd*ktkmsh
l*ryal*vkwitlcldstked**rmlsnysnlyqsinycrihychyncinsslnclnncl
ishwyhkwwwwygfiwwsir*rik*skcytwsl*rryflg****il***lplc**rry**
rfqw***i*n*c*r*fprr*frrricilln*tffhkkiiiii**liiiinnniii

Frame B:
fgvvvhqvvvsqilfhpmqhvhh*ivmlnk*vanmfnkhvmkhhvvliflnvkflqlava
qllevhlvkahqvvhqvlviklivqmvtfvq**in*qyvflhhplrqvlhqplahilplv
vqplahilllvvqplahilllvvqplahilllvvqplahilllvvqllvqhvvmltaqev
tivklevpklfvlpmnlthvpmlivv---

---WQLHPEHCGGRPNKIKVICVPSPKGTCKTVQCPKGYKCKLYADGPTCVKIEKPKCLT
CKDMHCESNGLLCVLTPQKKTDEECCPIIPICINPSTIAASTIATTTASTRHSTASTIAS
LVTGTTSGGGGMGSFGGRSDEESSDPNAILGLFEDDIFWGDNDEYFSDNYRYVDEEDIDE
DFNGNDEFEIDVEGDFQEDDFEEEYAFY*iklffikk****fnn*slssiitl*

Frame C:
le*lytk*wfhrfysiqcnmfiikl*cstnelqicstsms*nimls*yssmsnscnwrwp
sywkctwsrhirwytrfl**s*lskwlhlynsksissmcfsiilfvkffinhwltyyhww
fnhwltyyywwfnhwltyyywwfnhwltyyywwfnhwltyyywwfnywsnmw*c*lpkrl
pl*s*rfpsclccr*i*lmcqc*lw---

---gnytqnivadvqirlkssvfhhqkvlarlfnvqkvtnansmlmvqhv*rlknqnvsl
vkicivsqmdysvs*lhkrrlmknvvqlfqsvsihqllphpllplqlhqlvtqlpqqlph
*slvpqvvvvvwvhlvvdpmknqviqmlylvslktifsgvimmntlvittvmlmkkilmk
ismvmmnlklmlkviskkmiskknmhfiklnffs*knnnnnlitnhyhq**hyn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFC855 (CFC855Q) /CSM/CF/CFC8-C/CFC855Q.Seq.d/                       2428   0.0
SSM572 (SSM572Q) /CSM/SS/SSM5-C/SSM572Q.Seq.d/                       1241   0.0
SSC714 (SSC714Q) /CSM/SS/SSC7-A/SSC714Q.Seq.d/                       1241   0.0
SLA758 (SLA758Q) /CSM/SL/SLA7-C/SLA758Q.Seq.d/                       1241   0.0
SFH118 (SFH118Q) /CSM/SF/SFH1-A/SFH118Q.Seq.d/                       1241   0.0
SFF843 (SFF843Q) /CSM/SF/SFF8-B/SFF843Q.Seq.d/                       1241   0.0
SFF412 (SFF412Q) /CSM/SF/SFF4-A/SFF412Q.Seq.d/                       1241   0.0
CFH254 (CFH254Q) /CSM/CF/CFH2-C/CFH254Q.Seq.d/                       1241   0.0
CFC659 (CFC659Q) /CSM/CF/CFC6-C/CFC659Q.Seq.d/                       1241   0.0
CFC506 (CFC506Q) /CSM/CF/CFC5-A/CFC506Q.Seq.d/                       1241   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

M26238|M26238.1 D.discoideum spore coat protein SP70 gene, complete cds.  1241   0.0    3
AC115584|AC115584.2 Dictyostelium discoideum chromosome 2 map complement(3622543-3568102) strain AX4, complete sequence.  1241   0.0    11
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    44   5e-06  12
X16491|X16491.1 Dictyostelium discoideum sp96 gene for spore coat protein SP96.    34   6e-06  3
AC136724|AC136724.4 Mus musculus clone RP23-65F24, WORKING DRAFT SEQUENCE, 13 unordered pieces.    28   1e-05  4
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    40   5e-05  13
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    38   0.004  14
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.    36   0.032  13
AE014851|AE014851.1 Plasmodium falciparum 3D7 chromosome 12, section 8 of 9 of the complete sequence.    50   0.083  1
AC005140|AC005140.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    50   0.083  1
dna update 2004. 3. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr...   340   5e-92
B25439(B25439)Beejin protein - slime mold (Dictyostelium discoid...   116   2e-31
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -...    75   7e-12
(P14328) RecName: Full=Spore coat protein SP96;  &AC117075_49(AC...    75   7e-12
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;...    68   6e-10
(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor;        67   2e-09
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87...    67   2e-09
CP001574_180(CP001574|pid:none) Micromonas sp. RCC299 chromosome...    60   1e-07
S72639_1(S72639|pid:none) PspB=prespore-specific gene {5' region...    60   2e-07
(P54704) RecName: Full=Spore coat protein SP85; AltName: Full=Ce...    60   2e-07
protein update 2009. 5.12
PSORT 

 psg: 0.86  gvh: 0.47  alm: 0.37  top: 0.40  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for CFC855 is cyt
5' end seq. ID CFC855F
5' end seq. 
>CFC855F.Seq
TTTTGGAGTAGTTGTACACCAAGTAGTGGTTTCACAGATTTTATTCCATCCAATGCAACA
TGTTCATCATTAAATTGTAATGCTCAACAAATGAGTTGCAAATATGTTCAACAAGCATGT
CATGAAACATCATGTTGTCCTGATATTCCTCAATGTCAAATTCCTGCAACTGGCGGTGGC
CCAGCTACTGGAAGTGCACCTGGTCAAGGCACATCAGGTGGTACACCAGGTTCTTGTGAT
AAAGTTAATTGTCCAAATGGTTACATTTGTACAATAGTAAATCAATTAGCAGTATGTGTT
TCTCCATCATCCTCTTCGTCAAGTTCTTCATCAACCACTGGCTCACATACTACCACTGGT
GGTTCAACCACTGGCTCACATACTACTACTGGTGGTTCAACCACTGGCTCACATACTACT
ACTGGTGGTTCAACCACTGGCTCACATACTACTACTGGTGGTTCAACCACTGGCTCACAT
ACTACTACTGGTGGTTCAACTACTGGTCCAACATGTGGTAATGTTAACTGCCCAAGAGGT
TACCATTGTGAAGTTAGAGGTTCCCAAGCTGTTTGTGTTGCCGATGAATTTGACTCATGT
GCCAATGTTGATTGTGGTT----------
Length of 5' end seq. 619
3' end seq. ID CFC855Z
3' end seq. 
>CFC855Z.Seq
----------CTGGCAATTACACCCAGAACATTGTGGCGGACGTCCAAATAAGATTAAAG
TCATCTGTGTTCCATCACCAAAAGGTACTTGCAAGACTGTTCAATGTCCAAAAGGTTACA
AATGCAAACTCTATGCTGATGGTCCAACATGTGTAAAGATTGAAAAACCAAAATGTCTCA
CTTGTAAAGATATGCATTGTGAGTCAAATGGATTACTCTGTGTCTTGACTCCACAAAAGA
AGACTGATGAAGAATGTTGTCCAATTATTCCAATCTGTATCAATCCATCAACTATTGCCG
CATCCACTATTGCCACTACAACTGCATCAACTCGTCACTCAACTGCCTCAACAATTGCCT
CATTAGTCACTGGTACCACAAGTGGTGGTGGTGGTATGGGTTCATTTGGTGGTCGATCCG
ATGAAGAATCAAGTGATCCAAATGCTATACTTGGTCTCTTTGAAGACGATATTTTCTGGG
GTGATAATGATGAATACTTTAGTGATAACTACCGTTATGTTGATGAAGAAGATATTGATG
AAGATTTCAATGGTAATGATGAATTTGAAATTGATGTTGAAGGTGATTTCCAAGAAGATG
ATTTCGAAGAAGAATATGCATTTTATTAAATTAAACTTTTTTTCATAAAAAAATAATAAT
AATAATTTAATAACTAATCATTATCATCAATAATAACATTATAATA
Length of 3' end seq. 696
Connected seq. ID CFC855P
Connected seq. 
>CFC855P.Seq
TTTTGGAGTAGTTGTACACCAAGTAGTGGTTTCACAGATTTTATTCCATCCAATGCAACA
TGTTCATCATTAAATTGTAATGCTCAACAAATGAGTTGCAAATATGTTCAACAAGCATGT
CATGAAACATCATGTTGTCCTGATATTCCTCAATGTCAAATTCCTGCAACTGGCGGTGGC
CCAGCTACTGGAAGTGCACCTGGTCAAGGCACATCAGGTGGTACACCAGGTTCTTGTGAT
AAAGTTAATTGTCCAAATGGTTACATTTGTACAATAGTAAATCAATTAGCAGTATGTGTT
TCTCCATCATCCTCTTCGTCAAGTTCTTCATCAACCACTGGCTCACATACTACCACTGGT
GGTTCAACCACTGGCTCACATACTACTACTGGTGGTTCAACCACTGGCTCACATACTACT
ACTGGTGGTTCAACCACTGGCTCACATACTACTACTGGTGGTTCAACCACTGGCTCACAT
ACTACTACTGGTGGTTCAACTACTGGTCCAACATGTGGTAATGTTAACTGCCCAAGAGGT
TACCATTGTGAAGTTAGAGGTTCCCAAGCTGTTTGTGTTGCCGATGAATTTGACTCATGT
GCCAATGTTGATTGTGGTT----------CTGGCAATTACACCCAGAACATTGTGGCGGA
CGTCCAAATAAGATTAAAGTCATCTGTGTTCCATCACCAAAAGGTACTTGCAAGACTGTT
CAATGTCCAAAAGGTTACAAATGCAAACTCTATGCTGATGGTCCAACATGTGTAAAGATT
GAAAAACCAAAATGTCTCACTTGTAAAGATATGCATTGTGAGTCAAATGGATTACTCTGT
GTCTTGACTCCACAAAAGAAGACTGATGAAGAATGTTGTCCAATTATTCCAATCTGTATC
AATCCATCAACTATTGCCGCATCCACTATTGCCACTACAACTGCATCAACTCGTCACTCA
ACTGCCTCAACAATTGCCTCATTAGTCACTGGTACCACAAGTGGTGGTGGTGGTATGGGT
TCATTTGGTGGTCGATCCGATGAAGAATCAAGTGATCCAAATGCTATACTTGGTCTCTTT
GAAGACGATATTTTCTGGGGTGATAATGATGAATACTTTAGTGATAACTACCGTTATGTT
GATGAAGAAGATATTGATGAAGATTTCAATGGTAATGATGAATTTGAAATTGATGTTGAA
GGTGATTTCCAAGAAGATGATTTCGAAGAAGAATATGCATTTTATTAAATTAAACTTTTT
TTCATAAAAAAATAATAATAATAATTTAATAACTAATCATTATCATCAATAATAACATTA
TAATA
Length of connected seq. 1315
Full length Seq ID -
Full length Seq. -
Length of full length seq. -