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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFC851
Library CF
(Link to library)
Clone ID CFC851
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15337-1
Original site URL
Representative seq. ID CFC851P
(Link to Original site)
Representative DNA sequence 
>CFC851 (CFC851Q) /CSM/CF/CFC8-C/CFC851Q.Seq.d/
ATAGTCAAGGAAAAACTAGAGTTATCACTAAAATCATTACAAAGACTGTCAACAATACAC
AAGAGATCAATGCTCTCAAAGCAAGAATTGAGGAATTGGAAAGATTACTTCAAGAGGAAC
AAGATAAAAATAAAGCACTCACATTGAAATTATCGGAACGTGAAGCTATGATTCAAGAGG
TAACATCAGCAAGAAAGAGATTACAAGATATGAGTTCAACCAATGATAATTACACTGCCG
AAGTGGTTAAACAAAATGAACAATTACGTGAACAACTCATTGCCATCAGAGATTGGACTG
AACGTACAAGACTTCAAAGATTAGAGAAAGAGTTTGGTTTGGCTGCTGGTTCAATTCAAC
AATATCTCTCACAATTGGATAATCCAAACAATATGGGTAATCAAGAGGCAACTCATCAAT
TGGTTATCGAGGATTTGGTTAATCATTTACAACAAGCTCAACGTTTATCCGATCTTTGTA
ATCAAGAGGGTGATGATTTAGAAATGGATATTTTCTCTGCGGTCAATACAGTTTCAAACT
CTTTGAAGAGTTTATTCTTTGATGCCAAGGGTTCATCAAGATTAATTTTAGATCCAGAGT
CACAAAGTAAATTTATGGATGCCGXXXXXXXXXXTTAGAGAATGGTTTTGATTTGGATGA
TGTTGCTGAACGTGAACTATTGGCTGCCGCTAAAACCATTGAAGATGCTGCAAACTCATT
ATTGGCCGCAAAATCAAAGAGAGCTCCAAAGAAGGAGGGTGATTCACCAGATGTTGCTGA
GGCAATCCTTGAGGCTGCTATGGCAATCACTGGTGCTACTTCCACATTGGTTGGTGCCGC
CACTTTAGCACAAAGAGAACGTGTCGAAAAGGGTAGAACAAGTGATGGTGGTCCACTCTA
TAGAAAGGATCCAACTTGGGCTGAAGGTTTAATCTCTGCTGCAAAATCTGTTGCCCAAGC
CACTAAAGCTTTGGTAGATAATGCCAACAAGACAGCATCTGGTCAAGAGATCCCAGGTGG
TACAGAAGAAGCTCTCATTGCAACTTCGATGGCTGTAACTGCTGCAACTTCTCAATTGGT
CTCTGCTTGTAAATCTAAATCTGATATCAATAGTCCTTCTCAACATAAACTTTCAAATGC
TGCCAAATCCGTATCCAATGCAACCAATCTTTTAGTGGCTGCAGCCAAAGCTGTCGCTGC
TAAAGTCGCCTCTGAAGAGGATATCGATTTCGATAAACTCACTGTCACTGGTTATAAAGT
TAAAGAAATGGAACAACAAATGGCAATTCTCAGATTAGAAAAAGAATTAGAAGTCGCTAG
AAAAGGTTTAAGTGTTATTAGAAAGAAACAATA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
SQGKTRVITKIITKTVNNTQEINALKARIEELERLLQEEQDKNKALTLKLSEREAMIQEV
TSARKRLQDMSSTNDNYTAEVVKQNEQLREQLIAIRDWTERTRLQRLEKEFGLAAGSIQQ
YLSQLDNPNNMGNQEATHQLVIEDLVNHLQQAQRLSDLCNQEGDDLEMDIFSAVNTVSNS
LKSLFFDAKGSSRLILDPESQSKFMDA---

---LENGFDLDDVAERELLAAAKTIEDAANSLLAAKSKRAPKKEGDSPDVAEAILEAAMA
ITGATSTLVGAATLAQRERVEKGRTSDGGPLYRKDPTWAEGLISAAKSVAQATKALVDNA
NKTASGQEIPGGTEEALIATSMAVTAATSQLVSACKSKSDINSPSQHKLSNAAKSVSNAT
NLLVAAAKAVAAKVASEEDIDFDKLTVTGYKVKEMEQQMAILRLEKELEVARKGLSVIRK
KQ
Translated Amino Acid sequence (All Frames) 
Frame A:
ivkeklelslkslqrlstihkrsmlskqelrnwkdyfkrnkikikhsh*nyrnvkl*fkr
*hqqerdyki*vqpmiitlpkwlnkmnnyvnnslpseiglnvqdfkd*rkslvwllvqfn
nishnwiiqtiwvikrqlinwlsriwliiynklnvypifvikrvmi*kwifslrsiqfqt
l*rvyslmprvhqd*f*iqshkvnlwmp---

---LENGFDLDDVAERELLAAAKTIEDAANSLLAAKSKRAPKKEGDSPDVAEAILEAAMA
ITGATSTLVGAATLAQRERVEKGRTSDGGPLYRKDPTWAEGLISAAKSVAQATKALVDNA
NKTASGQEIPGGTEEALIATSMAVTAATSQLVSACKSKSDINSPSQHKLSNAAKSVSNAT
NLLVAAAKAVAAKVASEEDIDFDKLTVTGYKVKEMEQQMAILRLEKELEVARKGLSVIRK
KQ

Frame B:
*srkn*syh*nhykdcqqytrdqcsqskn*gigkitsrgtr*k*sthieiigt*sydsrg
niskkeitryefnq**lhcrsg*tk*tit*tthchqrld*tyktskirervwfgcwfnst
isltig*skqyg*srgnssigyrgfg*sfttsstfirsl*srg**frngyflcgqysfkl
feefil*cqgfikinfrsrvtk*iygc---

---*rmvliwmmllnvnywlplkplkmlqthywpqnqrelqrrrvihqmllrqslrllwq
slvllphwlvppl*hkenvskrveqvmvvhsieriqlglkv*sllqnllpkplklw*imp
trqhlvkrsqvvqkklslqlrwl*llqllnwsllvnlnlisivllninfqmlpnpypmqp
if*wlqpklsllksplkrisisinslslviklkkwnnkwqfsd*kkn*kslekv*vller
nn

Frame C:
SQGKTRVITKIITKTVNNTQEINALKARIEELERLLQEEQDKNKALTLKLSEREAMIQEV
TSARKRLQDMSSTNDNYTAEVVKQNEQLREQLIAIRDWTERTRLQRLEKEFGLAAGSIQQ
YLSQLDNPNNMGNQEATHQLVIEDLVNHLQQAQRLSDLCNQEGDDLEMDIFSAVNTVSNS
LKSLFFDAKGSSRLILDPESQSKFMDA---

---rewf*fg*cc*t*tigcr*nh*rcckliigrkikesskegg*ftrcc*gnp*gcygn
hwcyfhigwcrhfstkrtcrkg*nk*wwstl*kgsnlg*rfnlcckiccpsh*sfgr*cq
qdsiwsrdprwyrrsshcnfdgcnccnfsiglcl*i*i*yq*sfst*tfkccqiriqcnq
sfsgcsqscrc*srl*rgyrfr*thchwl*s*rngttngnsqirkrirsr*krfkcy*ke
ti
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFC851 (CFC851Q) /CSM/CF/CFC8-C/CFC851Q.Seq.d/                       2623   0.0
VHQ296 (VHQ296Q) /CSM/VH/VHQ2-D/VHQ296Q.Seq.d/                       1425   0.0
SHL395 (SHL395Q) /CSM/SH/SHL3-D/SHL395Q.Seq.d/                       1425   0.0
SHK510 (SHK510Q) /CSM/SH/SHK5-A/SHK510Q.Seq.d/                       1425   0.0
SHC662 (SHC662Q) /CSM/SH/SHC6-C/SHC662Q.Seq.d/                       1425   0.0
SHA740 (SHA740Q) /CSM/SH/SHA7-B/SHA740Q.Seq.d/                       1425   0.0
SHA557 (SHA557Q) /CSM/SH/SHA5-C/SHA557Q.Seq.d/                       1425   0.0
SHA409 (SHA409Q) /CSM/SH/SHA4-A/SHA409Q.Seq.d/                       1425   0.0
CHS178 (CHS178Q) /CSM/CH/CHS1-D/CHS178Q.Seq.d/                       1425   0.0
CHR474 (CHR474Q) /CSM/CH/CHR4-D/CHR474Q.Seq.d/                       1425   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U14576|U14576.2 Dictyostelium discoideum filopodin (talA) gene, complete cds.    56   7e-04  3
AL109919|AL109919.18 Human DNA sequence from clone RP1-258B3 on chromosome 6q16.1-16.3.    36   0.29   9
AP004830|AP004830.1 Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2, section 9/10.    36   1.2    8
AP006199|AP006199.1 Homo sapiens genomic DNA, chromosome 6, clone:RP11-482B5, complete sequence.    36   1.2    9
BX890538|BX890538.3 Mouse DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP24-419I12.    46   1.3    1
AL844886|AL844886.3 Mouse DNA sequence from clone RP23-464F7 on chromosome X.    46   1.3    1
AZ162197|AZ162197.1 SP_0071_B1_B03_SP6E Strongylocentrotus purpuratus, purple sea urchin, sperm genomic BAC library Strongylocentrotus purpuratus genomic clone Plate=71 Col=5 Row=D, DNA sequence.    32   3.4    2
AC008679|AC008679.5 Homo sapiens chromosome 5 clone CTB-53D8, complete sequence.    32   4.5    13
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    32   5.0    11
BX321882|BX321882.6 Zebrafish DNA sequence from clone DKEYP-30F1.    44   5.2    1
dna update 2004. 3. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54K81) RecName: Full=Talin-B;                                       173   1e-41
AB023655_1(AB023655|pid:none) Dictyostelium discoideum talB mRNA...   173   1e-41
(P54633) RecName: Full=Talin-A; AltName: Full=Filopodin;              153   2e-35
A57036(A57036)talin - slime mold (Dictyostelium discoideum)           153   2e-35
AE017345_306(AE017345|pid:none) Cryptococcus neoformans var. neo...   145   4e-33
EF107688_1(EF107688|pid:none) Emericella nidulans SlaB (slaB) ge...   138   5e-31
EF156414_1(EF156414|pid:none) Ascosphaera apis cytoskeleton asse...   137   9e-31
CP000501_90(CP000501|pid:none) Pichia stipitis CBS 6054 chromoso...   136   1e-30
AB430739_1(AB430739|pid:none) Aspergillus oryzae RIB40 Aoend4 ge...   135   4e-30
AM920435_781(AM920435|pid:none) Penicillium chrysogenum Wisconsi...   135   4e-30
protein update 2009. 5.12
PSORT 

 psg: 0.68  gvh: 0.30  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.37  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 28.0 %: nuclear
	 16.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: vacuolar
	  4.0 %: peroxisomal

>> prediction for CFC851 is cyt
5' end seq. ID CFC851F
5' end seq. 
>CFC851F.Seq
ATAGTCAAGGAAAAACTAGAGTTATCACTAAAATCATTACAAAGACTGTCAACAATACAC
AAGAGATCAATGCTCTCAAAGCAAGAATTGAGGAATTGGAAAGATTACTTCAAGAGGAAC
AAGATAAAAATAAAGCACTCACATTGAAATTATCGGAACGTGAAGCTATGATTCAAGAGG
TAACATCAGCAAGAAAGAGATTACAAGATATGAGTTCAACCAATGATAATTACACTGCCG
AAGTGGTTAAACAAAATGAACAATTACGTGAACAACTCATTGCCATCAGAGATTGGACTG
AACGTACAAGACTTCAAAGATTAGAGAAAGAGTTTGGTTTGGCTGCTGGTTCAATTCAAC
AATATCTCTCACAATTGGATAATCCAAACAATATGGGTAATCAAGAGGCAACTCATCAAT
TGGTTATCGAGGATTTGGTTAATCATTTACAACAAGCTCAACGTTTATCCGATCTTTGTA
ATCAAGAGGGTGATGATTTAGAAATGGATATTTTCTCTGCGGTCAATACAGTTTCAAACT
CTTTGAAGAGTTTATTCTTTGATGCCAAGGGTTCATCAAGATTAATTTTAGATCCAGAGT
CACAAAGTAAATTTATGGATGCCG----------
Length of 5' end seq. 624
3' end seq. ID CFC851Z
3' end seq. 
>CFC851Z.Seq
----------TTAGAGAATGGTTTTGATTTGGATGATGTTGCTGAACGTGAACTATTGGC
TGCCGCTAAAACCATTGAAGATGCTGCAAACTCATTATTGGCCGCAAAATCAAAGAGAGC
TCCAAAGAAGGAGGGTGATTCACCAGATGTTGCTGAGGCAATCCTTGAGGCTGCTATGGC
AATCACTGGTGCTACTTCCACATTGGTTGGTGCCGCCACTTTAGCACAAAGAGAACGTGT
CGAAAAGGGTAGAACAAGTGATGGTGGTCCACTCTATAGAAAGGATCCAACTTGGGCTGA
AGGTTTAATCTCTGCTGCAAAATCTGTTGCCCAAGCCACTAAAGCTTTGGTAGATAATGC
CAACAAGACAGCATCTGGTCAAGAGATCCCAGGTGGTACAGAAGAAGCTCTCATTGCAAC
TTCGATGGCTGTAACTGCTGCAACTTCTCAATTGGTCTCTGCTTGTAAATCTAAATCTGA
TATCAATAGTCCTTCTCAACATAAACTTTCAAATGCTGCCAAATCCGTATCCAATGCAAC
CAATCTTTTAGTGGCTGCAGCCAAAGCTGTCGCTGCTAAAGTCGCCTCTGAAGAGGATAT
CGATTTCGATAAACTCACTGTCACTGGTTATAAAGTTAAAGAAATGGAACAACAAATGGC
AATTCTCAGATTAGAAAAAGAATTAGAAGTCGCTAGAAAAGGTTTAAGTGTTATTAGAAA
GAAACAATA
Length of 3' end seq. 719
Connected seq. ID CFC851P
Connected seq. 
>CFC851P.Seq
ATAGTCAAGGAAAAACTAGAGTTATCACTAAAATCATTACAAAGACTGTCAACAATACAC
AAGAGATCAATGCTCTCAAAGCAAGAATTGAGGAATTGGAAAGATTACTTCAAGAGGAAC
AAGATAAAAATAAAGCACTCACATTGAAATTATCGGAACGTGAAGCTATGATTCAAGAGG
TAACATCAGCAAGAAAGAGATTACAAGATATGAGTTCAACCAATGATAATTACACTGCCG
AAGTGGTTAAACAAAATGAACAATTACGTGAACAACTCATTGCCATCAGAGATTGGACTG
AACGTACAAGACTTCAAAGATTAGAGAAAGAGTTTGGTTTGGCTGCTGGTTCAATTCAAC
AATATCTCTCACAATTGGATAATCCAAACAATATGGGTAATCAAGAGGCAACTCATCAAT
TGGTTATCGAGGATTTGGTTAATCATTTACAACAAGCTCAACGTTTATCCGATCTTTGTA
ATCAAGAGGGTGATGATTTAGAAATGGATATTTTCTCTGCGGTCAATACAGTTTCAAACT
CTTTGAAGAGTTTATTCTTTGATGCCAAGGGTTCATCAAGATTAATTTTAGATCCAGAGT
CACAAAGTAAATTTATGGATGCCG----------TTAGAGAATGGTTTTGATTTGGATGA
TGTTGCTGAACGTGAACTATTGGCTGCCGCTAAAACCATTGAAGATGCTGCAAACTCATT
ATTGGCCGCAAAATCAAAGAGAGCTCCAAAGAAGGAGGGTGATTCACCAGATGTTGCTGA
GGCAATCCTTGAGGCTGCTATGGCAATCACTGGTGCTACTTCCACATTGGTTGGTGCCGC
CACTTTAGCACAAAGAGAACGTGTCGAAAAGGGTAGAACAAGTGATGGTGGTCCACTCTA
TAGAAAGGATCCAACTTGGGCTGAAGGTTTAATCTCTGCTGCAAAATCTGTTGCCCAAGC
CACTAAAGCTTTGGTAGATAATGCCAACAAGACAGCATCTGGTCAAGAGATCCCAGGTGG
TACAGAAGAAGCTCTCATTGCAACTTCGATGGCTGTAACTGCTGCAACTTCTCAATTGGT
CTCTGCTTGTAAATCTAAATCTGATATCAATAGTCCTTCTCAACATAAACTTTCAAATGC
TGCCAAATCCGTATCCAATGCAACCAATCTTTTAGTGGCTGCAGCCAAAGCTGTCGCTGC
TAAAGTCGCCTCTGAAGAGGATATCGATTTCGATAAACTCACTGTCACTGGTTATAAAGT
TAAAGAAATGGAACAACAAATGGCAATTCTCAGATTAGAAAAAGAATTAGAAGTCGCTAG
AAAAGGTTTAAGTGTTATTAGAAAGAAACAATA
Length of connected seq. 1343
Full length Seq ID -
Full length Seq. -
Length of full length seq. -