CFC844
Library CF
(Link to library)
Clone ID CFC844
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16455-1
Original site URL
Representative seq. ID CFC844P
(Link to Original site)
Representative DNA sequence
>CFC844 (CFC844Q) /CSM/CF/CFC8-B/CFC844Q.Seq.d/
AAAAAAGTATAATACAAGATGGGTAAAGAAAAAACACATATTAATATCGTCGTTATTGGT
CACGTAGATGCTGGTAAATCAACCACCACTGGTCATTTAATCTACAAATGTGGTTGTATC
GATAAAAGAGTTATCGAAAAATACGAAAAGGAAGCTTCTGAAATGGGTAAACAATCATTC
AAATATGCTTGGGTTATGGATAAATTAAAAGCTGAACGTGAAAGAGGTATTACCATCGAT
ATTGCTTTATGGAAATTCGAAACCTCAAAATACTACTTCACCATTATTGATGCTCCAGGT
CACAGAGATTTCATCAAGAATATGATTACTGGTACCTCACAAGCCGATTGTGCTGTCTTA
GTCATTGCCTCCCCAACTGGTGAGTTCGAAGCTGGTATTGCCAAGAACGGTCAAACTCGT
GAACACGCTCTCCTTGCTTACACTTTAGGTGTCAAACAAATGATCGTTGCTATCAACAAG
ATGGATGAAAAATCAACCAACTACTCACAAGCCCGTTACGACGAAATTGTCAAAGAAGTT
TCATCTTTCATTAAAAAGATTGGTTACAACCCAGAAAAAGTTGCCTTCGTCCCAATTTCA
GGTTGGAATGGTGATAACATGTTAGXXXXXXXXXXAGAAGCCCTCGATGCCATCGTCGAA
CCAAAACGTCCACACGATAAACCATTACGTATTCCATTACAAGATGTCTACAAGATCGGT
GGTATCGGTACTGTTCCAGTAGGTCGTGTCGAAACTGGTATCATTAAACCAGGTATGGTC
GTCACCTTTGCCCCAGCTGGTCTCTCAACTGAAGTTAAATCAGTCGAAATGCATCACGAA
CAACTCCCAGAAGCCCGTCCAGGTGACAATGTAGGTTTCAACGTTAAAAACGTTTCAGTC
AAAGAAATTAAAAGAGGTATGGTCGCTGGTGACTCCAAAAACGATCCACCACAAGAAACT
GAAAAATTCGTTGCTCAAGTTATCGTCCTCAACCATCCAGGTCAAATCCATGCTGGTTAC
TCACCAGTCTTAGATTGTCACACTGCTCACATTGCCTGTAAATTCACTGAAATCGTCGAT
AAAGTTGATCGTCGTACTGGTGCCGTCGTTGCCAAAGAAGGTACTGCCGCCGTCGTCTTA
AAGAATGGTGATGCTGCTATGGTCGAATTAACCCCATCTCGTCCAATGTGTGTTGAATCA
TTCACTGAATACCCACCATTAGGTCGTTTCGCCGTCAGAGATATGAGACAAACCGTTGCC
GTCGGTGTCATCAAATCAACCGTCAAGAAAGCCCCAGGTAAAGCAGGTGATAAGAAAGGT
GCTGCTGCTCCATCAAAGAAGAAATAAATAATTNAAAAAAAATTTTATAATTATCTAAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence
kkv*YKMGKEKTHINIVVIGHVDAGKSTTTGHLIYKCGCIDKRVIEKYEKEASEMGKQSF
KYAWVMDKLKAERERGITIDIALWKFETSKYYFTIIDAPGHRDFIKNMITGTSQADCAVL
VIASPTGEFEAGIAKNGQTREHALLAYTLGVKQMIVAINKMDEKSTNYSQARYDEIVKEV
SSFIKKIGYNPEKVAFVPISGWNGDNML---

---EALDAIVEPKRPHDKPLRIPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPAGLS
TEVKSVEMHHEQLPEARPGDNVGFNVKNVSVKEIKRGMVAGDSKNDPPQETEKFVAQVIV
LNHPGQIHAGYSPVLDCHTAHIACKFTEIVDKVDRRTGAVVAKEGTAAVVLKNGDAAMVE
LTPSRPMCVESFTEYPPLGRFAVRDMRQTVAVGVIKSTVKKAPGKAGDKKGAAAPSKKK*
iixkkfynylk


Translated Amino Acid sequence (All Frames)
Frame A:
kkv*YKMGKEKTHINIVVIGHVDAGKSTTTGHLIYKCGCIDKRVIEKYEKEASEMGKQSF
KYAWVMDKLKAERERGITIDIALWKFETSKYYFTIIDAPGHRDFIKNMITGTSQADCAVL
VIASPTGEFEAGIAKNGQTREHALLAYTLGVKQMIVAINKMDEKSTNYSQARYDEIVKEV
SSFIKKIGYNPEKVAFVPISGWNGDNML---

---rsprchrrtktstr*titysitrclqdrwyrycssrscrnwyh*trygrhlcpswsl
n*s*isrnasrttprspsr*qcrfqr*krfsqrn*krygrw*lqkrsttrn*kircssyr
pqpsrsnpcwlltslrlshcshcl*ih*nrr*s*ssywcrrcqrrycrrrlkew*ccygr
inpissnvc*iih*iptirsfrrqryetnrcrrchqinrqespr*sr**ercccsikeei
nnxkkil*lsk

Frame B:
kkyntrwvkkkhilissllvt*mlvnqpplvi*stnvvvsikelskntkrkllkwvnnhs
nmlglwin*klnvkevlpsillygnskpqnttspllmlqvteissri*llvphkpivls*
slppqlvssklvlprtvklvntlslltl*vsnk*sllstrwmknqptthkpvttklskkf
hlslkrlvttqkklpssqfqvgmvitc*---

---EALDAIVEPKRPHDKPLRIPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPAGLS
TEVKSVEMHHEQLPEARPGDNVGFNVKNVSVKEIKRGMVAGDSKNDPPQETEKFVAQVIV
LNHPGQIHAGYSPVLDCHTAHIACKFTEIVDKVDRRTGAVVAKEGTAAVVLKNGDAAMVE
LTPSRPMCVESFTEYPPLGRFAVRDMRQTVAVGVIKSTVKKAPGKAGDKKGAAAPSKKK*
iixkkfynylk

Frame C:
ksiiqdg*rknty*yrrywsrrcw*inhhwsfnlqmwlyr*ksyrkirkgsf*ng*tiiq
iclgyg*iks*t*kryyhrycfmeirnlkillhhy*csrsqrfhqeydywyltsrlccls
hclpnw*vrswycqersns*trspclhfrcqtndrcyqqdg*kinqlltsplrrncqrsf
ifh*kdwlqprksclrpnfrlew**hv---

---kpsmpssnqnvhtinhyvfhykmstrsvvsvlfq*vvsklvslnqvwssplpqlvsq
lklnqskcitnnsqkpvqvtm*vstlktfqskklkevwslvtpktihhkklknsllklss
stiqvksmlvthqs*ivtlltlpvnslkssiklivvlvpslpkkvlppss*rmvmllwsn
*phlvqcvlnhslnthh*vvspsei*dkplpsvssnqpsrkpqvkqvirkvlllhqrrnk
*xkknfiii*

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFC844 (CFC844Q) /CSM/CF/CFC8-B/CFC844Q.Seq.d/ 2623 0.0
VFI867 (VFI867Q) /CSM/VF/VFI8-C/VFI867Q.Seq.d/ 1415 0.0
CFF722 (CFF722Q) /CSM/CF/CFF7-A/CFF722Q.Seq.d/ 1413 0.0
CHE287 (CHE287Q) /CSM/CH/CHE2-D/CHE287Q.Seq.d/ 1411 0.0
VFD312 (VFD312Q) /CSM/VF/VFD3-A/VFD312Q.Seq.d/ 1409 0.0
CHB274 (CHB274Q) /CSM/CH/CHB2-D/CHB274Q.Seq.d/ 1407 0.0
CFH117 (CFH117Q) /CSM/CF/CFH1-A/CFH117Q.Seq.d/ 1405 0.0
CFC589 (CFC589Q) /CSM/CF/CFC5-D/CFC589Q.Seq.d/ 1405 0.0
VFE185 (VFE185Q) /CSM/VF/VFE1-D/VFE185Q.Seq.d/ 1400 0.0
SFG573 (SFG573Q) /CSM/SF/SFG5-D/SFG573Q.Seq.d/ 1400 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

X55972|X55972.1 D. discoideum EF1-II gene for elongation factor 1 alpha. 1415 0.0 1
X55973|X55973.1 D. discoideum EF1-I gene for elongation factor 1 alpha. 1338 0.0 1
AF016242|AF016242.1 Dictyostelium discoideum protein synthesis elongation factor 1-alpha (tef2) gene, partial cds. 1181 0.0 2
M29934|M29934.1 C.albicans elongation factor 1-alpha (TEF-1) gene, complete cds. 252 0.0 11
M29935|M29935.1 C.albicans elongation factor 1-alpha (TEF-2) gene, complete cds. 228 0.0 11
AF402092|AF402092.1 Pichia anomala strain NRRL Y-366 translation elongation factor 1-alpha gene, partial cds. 224 e-170 9
AX109714|AX109714.1 Sequence 447 from Patent WO0123604. 188 e-170 10
AX109715|AX109715.1 Sequence 448 from Patent WO0123604. 192 e-168 10
AX109679|AX109679.1 Sequence 412 from Patent WO0123604. 155 e-153 9
AX109682|AX109682.1 Sequence 415 from Patent WO0123604. 155 e-153 9
dna update 2004. 3. 3
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P18624) RecName: Full=Elongation factor 1-alpha; Short... 825 0.0
X55973_1(X55973|pid:none) D. discoideum EF1-I gene for elongatio... 818 0.0
X55972_1(X55972|pid:none) D. discoideum EF1-II gene for elongati... 818 0.0
BC092884_1(BC092884|pid:none) Danio rerio zgc:110335, mRNA (cDNA... 677 0.0
BC060907_1(BC060907|pid:none) Danio rerio zgc:73138, mRNA (cDNA ... 676 0.0
AB124568_1(AB124568|pid:none) Pelodiscus sinensis PsEF1a mRNA fo... 674 0.0
(P10126) RecName: Full=Elongation factor 1-alpha 1; Sho... 673 0.0
M22432_1(M22432|pid:none) Mus musculus protein synthesis elongat... 673 0.0
AY893896_1(AY893896|pid:none) Synthetic construct Homo sapiens c... 673 0.0
AK222551_1(AK222551|pid:none) Homo sapiens mRNA for eukaryotic t... 673 0.0
protein update 2009. 5.12
PSORT

psg: 0.84 gvh: 0.34 alm: 0.39 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: nuclear
36.0 %: cytoplasmic
8.0 %: cytoskeletal
8.0 %: vacuolar
4.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for CFC844 is nuc

5' end seq. ID CFC844F
5' end seq.
>CFC844F.Seq
AAAAAAGTATAATACAAGATGGGTAAAGAAAAAACACATATTAATATCGTCGTTATTGGT
CACGTAGATGCTGGTAAATCAACCACCACTGGTCATTTAATCTACAAATGTGGTTGTATC
GATAAAAGAGTTATCGAAAAATACGAAAAGGAAGCTTCTGAAATGGGTAAACAATCATTC
AAATATGCTTGGGTTATGGATAAATTAAAAGCTGAACGTGAAAGAGGTATTACCATCGAT
ATTGCTTTATGGAAATTCGAAACCTCAAAATACTACTTCACCATTATTGATGCTCCAGGT
CACAGAGATTTCATCAAGAATATGATTACTGGTACCTCACAAGCCGATTGTGCTGTCTTA
GTCATTGCCTCCCCAACTGGTGAGTTCGAAGCTGGTATTGCCAAGAACGGTCAAACTCGT
GAACACGCTCTCCTTGCTTACACTTTAGGTGTCAAACAAATGATCGTTGCTATCAACAAG
ATGGATGAAAAATCAACCAACTACTCACAAGCCCGTTACGACGAAATTGTCAAAGAAGTT
TCATCTTTCATTAAAAAGATTGGTTACAACCCAGAAAAAGTTGCCTTCGTCCCAATTTCA
GGTTGGAATGGTGATAACATGTTAG----------
Length of 5' end seq. 625
3' end seq. ID CFC844Z
3' end seq.
>CFC844Z.Seq
----------AGAAGCCCTCGATGCCATCGTCGAACCAAAACGTCCACACGATAAACCAT
TACGTATTCCATTACAAGATGTCTACAAGATCGGTGGTATCGGTACTGTTCCAGTAGGTC
GTGTCGAAACTGGTATCATTAAACCAGGTATGGTCGTCACCTTTGCCCCAGCTGGTCTCT
CAACTGAAGTTAAATCAGTCGAAATGCATCACGAACAACTCCCAGAAGCCCGTCCAGGTG
ACAATGTAGGTTTCAACGTTAAAAACGTTTCAGTCAAAGAAATTAAAAGAGGTATGGTCG
CTGGTGACTCCAAAAACGATCCACCACAAGAAACTGAAAAATTCGTTGCTCAAGTTATCG
TCCTCAACCATCCAGGTCAAATCCATGCTGGTTACTCACCAGTCTTAGATTGTCACACTG
CTCACATTGCCTGTAAATTCACTGAAATCGTCGATAAAGTTGATCGTCGTACTGGTGCCG
TCGTTGCCAAAGAAGGTACTGCCGCCGTCGTCTTAAAGAATGGTGATGCTGCTATGGTCG
AATTAACCCCATCTCGTCCAATGTGTGTTGAATCATTCACTGAATACCCACCATTAGGTC
GTTTCGCCGTCAGAGATATGAGACAAACCGTTGCCGTCGGTGTCATCAAATCAACCGTCA
AGAAAGCCCCAGGTAAAGCAGGTGATAAGAAAGGTGCTGCTGCTCCATCAAAGAAGAAAT
AAATAATTNAAAAAAAATTTTATAATTATCTAAAA
Length of 3' end seq. 745
Connected seq. ID CFC844P
Connected seq.
>CFC844P.Seq
AAAAAAGTATAATACAAGATGGGTAAAGAAAAAACACATATTAATATCGTCGTTATTGGT
CACGTAGATGCTGGTAAATCAACCACCACTGGTCATTTAATCTACAAATGTGGTTGTATC
GATAAAAGAGTTATCGAAAAATACGAAAAGGAAGCTTCTGAAATGGGTAAACAATCATTC
AAATATGCTTGGGTTATGGATAAATTAAAAGCTGAACGTGAAAGAGGTATTACCATCGAT
ATTGCTTTATGGAAATTCGAAACCTCAAAATACTACTTCACCATTATTGATGCTCCAGGT
CACAGAGATTTCATCAAGAATATGATTACTGGTACCTCACAAGCCGATTGTGCTGTCTTA
GTCATTGCCTCCCCAACTGGTGAGTTCGAAGCTGGTATTGCCAAGAACGGTCAAACTCGT
GAACACGCTCTCCTTGCTTACACTTTAGGTGTCAAACAAATGATCGTTGCTATCAACAAG
ATGGATGAAAAATCAACCAACTACTCACAAGCCCGTTACGACGAAATTGTCAAAGAAGTT
TCATCTTTCATTAAAAAGATTGGTTACAACCCAGAAAAAGTTGCCTTCGTCCCAATTTCA
GGTTGGAATGGTGATAACATGTTAG----------AGAAGCCCTCGATGCCATCGTCGAA
CCAAAACGTCCACACGATAAACCATTACGTATTCCATTACAAGATGTCTACAAGATCGGT
GGTATCGGTACTGTTCCAGTAGGTCGTGTCGAAACTGGTATCATTAAACCAGGTATGGTC
GTCACCTTTGCCCCAGCTGGTCTCTCAACTGAAGTTAAATCAGTCGAAATGCATCACGAA
CAACTCCCAGAAGCCCGTCCAGGTGACAATGTAGGTTTCAACGTTAAAAACGTTTCAGTC
AAAGAAATTAAAAGAGGTATGGTCGCTGGTGACTCCAAAAACGATCCACCACAAGAAACT
GAAAAATTCGTTGCTCAAGTTATCGTCCTCAACCATCCAGGTCAAATCCATGCTGGTTAC
TCACCAGTCTTAGATTGTCACACTGCTCACATTGCCTGTAAATTCACTGAAATCGTCGAT
AAAGTTGATCGTCGTACTGGTGCCGTCGTTGCCAAAGAAGGTACTGCCGCCGTCGTCTTA
AAGAATGGTGATGCTGCTATGGTCGAATTAACCCCATCTCGTCCAATGTGTGTTGAATCA
TTCACTGAATACCCACCATTAGGTCGTTTCGCCGTCAGAGATATGAGACAAACCGTTGCC
GTCGGTGTCATCAAATCAACCGTCAAGAAAGCCCCAGGTAAAGCAGGTGATAAGAAAGGT
GCTGCTGCTCCATCAAAGAAGAAATAAATAATTNAAAAAAAATTTTATAATTATCTAAAA
Length of connected seq. 1370
Full length Seq ID -
Full length Seq. -
Length of full length seq. -