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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFC838
Library CF
(Link to library)
Clone ID CFC838
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16511-1
Original site URL
Representative seq. ID CFC838P
(Link to Original site)
Representative DNA sequence 
>CFC838 (CFC838Q) /CSM/CF/CFC8-B/CFC838Q.Seq.d/
CACTGTTGGCCTACTGGNAATAATTTTTTCTTTTTTTTACTTTGACTTTTGGTTTATCTA
GTATCAAGTTTCCATTAAAATAATATTAATAATATTATAAAATAATAGTAATTGTACAAT
TTGTATCATTCCTTTTTTTTTTTTNTAAAAAAATAANTTAAATTNTTAATAAAAGGXXXX
XXXXXXACAATCTGCTGCAATTCAAACTGATGTAAACGTTGCCAACAAACAAAACCAAGA
AAACAAAGCTAATCAAGAAAACAAAGCTAATCAAGAAAACAAAGATAATCAAGAAAATGG
TGATAATCAAGTGAATGATGCTAATCAAGAACAAAATCAAAATGAAAACAATGTTAATAA
GAAAGTTGAAGAAAGTCAATCAAGAAAATCAAGAAAATCAAAACAAGGTAGACAAGGTAG
AAAATCAAGACAAGAAAAAGAAAATACTAATGATTTATTAGGTCTTGATATTGGTCTTGG
TTTAAATGGTAATAATCAAGAAGATGCTGAAAACCCAGGTTTATTCGCCAGATTAGGTGT
TTCTAAACGTCAATTGGTTCCAGAAGAAATTGAAAACCAAGATTTGGCAGAAGCTGCTTT
TGAAATCACTTCTGAATTAGAACAAGAAGTTATTCGTCAAATTAATGGTCAACAAGCTGA
CTATACTGTTAATCCAGAAATAGTTGCTCAAGCTAAATTAATCGTTGAAAATGCTTATGA
TGCTTATTAAAACACCGTACCAACATCACCACCATCACCACCAATAAAATATAATTACAA
AACTCATTCAAAATTTATATTAAATTTTATTTTATATCATAAACTTCAAAAATCAATTAA
ACAAAATTAAATAAATTTCT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
hcwptgnnffffll*llvylvssfh*nninniik***lynlyhsffffxkk*XKXLIK--
-

---QSAAIQTDVNVANKQNQENKANQENKANQENKDNQENGDNQVNDANQEQNQNENNVN
KKVEESQSRKSRKSKQGRQGRKSRQEKENTNDLLGLDIGLGLNGNNQEDAENPGLFARLG
VSKRQLVPEEIENQDLAEAAFEITSELEQEVIRQINGQQADYTVNPEIVAQAKLIVENAY
DAY*ntvptsppsppikynykthskfilnfilyhklqksikqn*inf
Translated Amino Acid sequence (All Frames) 
Frame A:
hcwptgnnffffll*llvylvssfh*nninniik***lynlyhsffffxkk*XKXLIK--
-

---ticcnsn*ckrcqqtkprkqs*srkqs*srkqr*srkw**sse*c*srtksk*kqc*
*es*rksikkikkiktr*tr*kiktrkrky**firs*ywswfkw**srrc*kprfirqir
cf*tsigsrrn*kprfgrscf*nhf*irtrsyssn*wsts*lyc*srnscss*inr*kcl
*cllkhrtnittittnki*lqnsfkiyikfyfis*tskin*tklnkf

Frame B:
tvgllxiifsffyfdfwfi*yqvsikiiliil*nnsncticiipfffx*knxlnx**k--
-

---QSAAIQTDVNVANKQNQENKANQENKANQENKDNQENGDNQVNDANQEQNQNENNVN
KKVEESQSRKSRKSKQGRQGRKSRQEKENTNDLLGLDIGLGLNGNNQEDAENPGLFARLG
VSKRQLVPEEIENQDLAEAAFEITSELEQEVIRQINGQQADYTVNPEIVAQAKLIVENAY
DAY*ntvptsppsppikynykthskfilnfilyhklqksikqn*inf

Frame C:
llaywx*fflfftltfglssikfplk*y**yykiivivqfvsflfffxkkix*ixnkr--
-

---nllqfklm*tlptnktkktklikktklikktkiikkmviik*mmliknkikmktmli
rklkkvnqenqenqnkvdkvenqdkkkkilmiy*vlilvlv*mviikkmlktqvyspd*v
flnvnwfqkklktkiwqklllkslln*nkklfvklmvnkltilliqk*llkln*slkmlm
mliktpyqhhhhhhq*niitkliqnly*ilfyiinfknqlnkik*is
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI538 (SSI538Q) /CSM/SS/SSI5-B/SSI538Q.Seq.d/                        700   0.0
SLI594 (SLI594Q) /CSM/SL/SLI5-D/SLI594Q.Seq.d/                        700   0.0
SLG334 (SLG334Q) /CSM/SL/SLG3-B/SLG334Q.Seq.d/                        700   0.0
SLD240 (SLD240Q) /CSM/SL/SLD2-B/SLD240Q.Seq.d/                        700   0.0
SLD162 (SLD162Q) /CSM/SL/SLD1-C/SLD162Q.Seq.d/                        700   0.0
SLC748 (SLC748Q) /CSM/SL/SLC7-B/SLC748Q.Seq.d/                        700   0.0
SLB429 (SLB429Q) /CSM/SL/SLB4-B/SLB429Q.Seq.d/                        700   0.0
SLA662 (SLA662Q) /CSM/SL/SLA6-C/SLA662Q.Seq.d/                        700   0.0
SFH373 (SFH373Q) /CSM/SF/SFH3-D/SFH373Q.Seq.d/                        700   0.0
SFG667 (SFG667Q) /CSM/SF/SFG6-C/SFG667Q.Seq.d/                        700   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.   700   0.0    7
AC137282|AC137282.1 Rattus norvegicus clone CH230-unknown, *** SEQUENCING IN PROGRESS ***, 17 unordered pieces.    52   9e-06  4
AC095837|AC095837.8 Rattus norvegicus clone CH230-10E13, *** SEQUENCING IN PROGRESS ***, 14 unordered pieces.    52   2e-05  2
AC084414|AC084414.2 Arabidopsis thaliana chromosome 1 BAC F27K7 genomic sequence, complete sequence.    48   2e-04  2
BX323063|BX323063.7 Human DNA sequence *** SEQUENCING CANCELLED *** from clone  RP5-1067K7.    48   0.002  2
AC137555|AC137555.2 Mus musculus chromosome UNK clone RP23-445B17, WORKING DRAFT SEQUENCE, 5 unordered pieces.    42   0.007  5
AC133442|AC133442.2 Rattus norvegicus clone CH230-195P21, WORKING DRAFT SEQUENCE, 4 unordered pieces.    44   0.007  6
AC122665|AC122665.4 Rattus norvegicus clone CH230-225M15, WORKING DRAFT SEQUENCE, 8 unordered pieces.    44   0.007  5
AC103332|AC103332.8 Rattus norvegicus clone CH230-29F6, WORKING DRAFT SEQUENCE, 11 unordered pieces.    44   0.011  6
AC130077|AC130077.2 Rattus norvegicus clone CH230-165L20, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    52   0.013  1
dna update 2004. 3. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117070_42(AC117070|pid:none) Dictyostelium discoideum chromoso...   151   3e-35
CP000698_138(CP000698|pid:none) Geobacter uraniireducens Rf4, co...    35   2.3
CP000577_1483(CP000577|pid:none) Rhodobacter sphaeroides ATCC 17...    35   3.1
AL844504_263(AL844504|pid:none) Plasmodium falciparum 3D7 chromo...    35   3.1
CP000143_1440(CP000143|pid:none) Rhodobacter sphaeroides 2.4.1 c...    35   3.1
protein update 2009. 5.12
PSORT 

 psg: 0.66  gvh: 0.21  alm: 0.52  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.06  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: endoplasmic reticulum

>> prediction for CFC838 is nuc
5' end seq. ID CFC838F
5' end seq. 
>CFC838F.Seq
CACTGTTGGCCTACTGGNAATAATTTTTTCTTTTTTTTACTTTGACTTTTGGTTTATCTA
GTATCAAGTTTCCATTAAAATAATATTAATAATATTATAAAATAATAGTAATTGTACAAT
TTGTATCATTCCTTTTTTTTTTTTNTAAAAAAATAANTTAAATTNTTAATAAAAGG----
------
Length of 5' end seq. 176
3' end seq. ID CFC838Z
3' end seq. 
>CFC838Z.Seq
----------ACAATCTGCTGCAATTCAAACTGATGTAAACGTTGCCAACAAACAAAACC
AAGAAAACAAAGCTAATCAAGAAAACAAAGCTAATCAAGAAAACAAAGATAATCAAGAAA
ATGGTGATAATCAAGTGAATGATGCTAATCAAGAACAAAATCAAAATGAAAACAATGTTA
ATAAGAAAGTTGAAGAAAGTCAATCAAGAAAATCAAGAAAATCAAAACAAGGTAGACAAG
GTAGAAAATCAAGACAAGAAAAAGAAAATACTAATGATTTATTAGGTCTTGATATTGGTC
TTGGTTTAAATGGTAATAATCAAGAAGATGCTGAAAACCCAGGTTTATTCGCCAGATTAG
GTGTTTCTAAACGTCAATTGGTTCCAGAAGAAATTGAAAACCAAGATTTGGCAGAAGCTG
CTTTTGAAATCACTTCTGAATTAGAACAAGAAGTTATTCGTCAAATTAATGGTCAACAAG
CTGACTATACTGTTAATCCAGAAATAGTTGCTCAAGCTAAATTAATCGTTGAAAATGCTT
ATGATGCTTATTAAAACACCGTACCAACATCACCACCATCACCACCAATAAAATATAATT
ACAAAACTCATTCAAAATTTATATTAAATTTTATTTTATATCATAAACTTCAAAAATCAA
TTAAACAAAATTAAATAAATTTCT
Length of 3' end seq. 674
Connected seq. ID CFC838P
Connected seq. 
>CFC838P.Seq
CACTGTTGGCCTACTGGNAATAATTTTTTCTTTTTTTTACTTTGACTTTTGGTTTATCTA
GTATCAAGTTTCCATTAAAATAATATTAATAATATTATAAAATAATAGTAATTGTACAAT
TTGTATCATTCCTTTTTTTTTTTTNTAAAAAAATAANTTAAATTNTTAATAAAAGG----
------ACAATCTGCTGCAATTCAAACTGATGTAAACGTTGCCAACAAACAAAACCAAGA
AAACAAAGCTAATCAAGAAAACAAAGCTAATCAAGAAAACAAAGATAATCAAGAAAATGG
TGATAATCAAGTGAATGATGCTAATCAAGAACAAAATCAAAATGAAAACAATGTTAATAA
GAAAGTTGAAGAAAGTCAATCAAGAAAATCAAGAAAATCAAAACAAGGTAGACAAGGTAG
AAAATCAAGACAAGAAAAAGAAAATACTAATGATTTATTAGGTCTTGATATTGGTCTTGG
TTTAAATGGTAATAATCAAGAAGATGCTGAAAACCCAGGTTTATTCGCCAGATTAGGTGT
TTCTAAACGTCAATTGGTTCCAGAAGAAATTGAAAACCAAGATTTGGCAGAAGCTGCTTT
TGAAATCACTTCTGAATTAGAACAAGAAGTTATTCGTCAAATTAATGGTCAACAAGCTGA
CTATACTGTTAATCCAGAAATAGTTGCTCAAGCTAAATTAATCGTTGAAAATGCTTATGA
TGCTTATTAAAACACCGTACCAACATCACCACCATCACCACCAATAAAATATAATTACAA
AACTCATTCAAAATTTATATTAAATTTTATTTTATATCATAAACTTCAAAAATCAATTAA
ACAAAATTAAATAAATTTCT
Length of connected seq. 850
Full length Seq ID -
Full length Seq. -
Length of full length seq. -