CFC817 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

CFC817
Library	CF (Link to library)
Clone ID	CFC817 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U16477-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/CF/CFC8-A/CFC817Q.Seq.d/
Representative seq. ID	CFC817P (Link to Original site)
Representative DNA sequence	>CFC817 (CFC817Q) /CSM/CF/CFC8-A/CFC817Q.Seq.d/ GTTCTCCAATTTTTAAAAAAAAAAGAAAATAAGAAAAAAAATAATATTTTATTAGTCATT ATAAAATTGTGAATTATATACAAAACTTTCAAACAGATAGTTCAGCCCTAATATTAGGTT TATTGATTAACCTAATAATACTTGTAGCAATAATTAATTGGGTATATAATTTATTTTCTG GGCATTCTTCTGAACATACCAAAAACGAGTTAAAGGTGGCGTCCAAAACTTCAAAAAAAA GAAGAGATCAATCTGAAGAAATGTCAAAACAAAATAAATTAACAAAAGTTTTGGATAACG ACCTTGATGATATAGATATAGAAGAAGATGACTCAACCAATCGTAAATTTGAATCTATGA GTGAAGATGAAGAAACTCCAGGTATGTGCTGNGAATGTACAGATCAACCAGCTGAAGTTG TATGTTTGCAATGTCAAGATGAACTTTGTACAGTTTGTTCAACTTCACTCCATAGAANAG GTTCACGTAGGTCACATATTTTTAAAAATAAACATGGTCAAGAACTTGATTATGATGAAT TAAATAAACGTGATCGTCAACCTCCATTACATGGCAAAGAAGATGAAAAAGTTCAAAACA XXXXXXXXXXAGTCCAAATCAATCGGAGAGAGGTTTTTCATTGGCTTTGGAACATGGCAT TGGTGGTGCACGTCTTTCTCACAATCATCGTAAACAATATAACTATGTATATCAATCACT CTCCTTGTGGCAACATATTCTTCATGATATGTTTAAACTTTGGTACTTTGCAGAAATTGA TCTTTTATGCGGACACAGATATCAATTATCAAACACTGGTCAAGGTCTAAATCGTATTCA ACAATGTCCAAACGTTGGTAAAATTATGCATAGTATTCTACGTCAAACTCAAAAAAAAGT TGGTGATGATTGGGTTGGTTCTTCCGTTATTCATTTGGGTGATCATAACGTTCCAAACTC TTTGGTTTTCATCGATAAATACACTCAAATCTCTAGAATCCTAAGTCCAATCGTTTTAAC CATTGAATATATTCCAAAGATCACCGATCCAAATTTAGTTGCTTACATCAAAAACACCTT TGGTGGTCCACAAACTTTAACCAAAATCATCCTTTGTGATTTCTTTAAACACGCTTTCGA TGGTAGTGGTGCCGATAACTTTTTCGATGCTGGCTCTTGTATTGATGGTAGATTAACTTC TGCTTGGCAATGGTCTGCTCAAATCGCAAAGAAACCTTATTATCCAATATTTTATTATCA GGTTTTAG
sequence update	2001. 6. 1
Translated Amino Acid sequence	spifkkkrkekkYFISHYKIVNYIQNFQTDSSALILGLLINLIILVAIINWVYNLFSG HSSEHTKNELKVASKTSKKRRDQSEEMSKQNKLTKVLDNDLDDIDIEEDDSTNRKFESMS EDEETPGMCXECTDQPAEVVCLQCQDELCTVCSTSLHRXGSRRSHIFKNKHGQELDYDEL NKRDRQPPLHGKEDEKVQN--- ---SPNQSERGFSLALEHGIGGARLSHNHRKQYNYVYQSLSLWQHILHDMFKLWYFAEID LLCGHRYQLSNTGQGLNRIQQCPNVGKIMHSILRQTQKKVGDDWVGSSVIHLGDHNVPNS LVFIDKYTQISRILSPIVLTIEYIPKITDPNLVAYIKNTFGGPQTLTKIILCDFFKHAFD GSGADNFFDAGSCIDGRLTSAWQWSAQIAKKPYYPIFYYQVL
Translated Amino Acid sequence (All Frames)	Frame A: vlqflkkkenkkknnillviikliiyktfkqivqpyvylt*ylqligyiiyfl gillnipktsrwrpklqkkeeinlkkcqnkinqkfwittlmiikkmtqpivnlnl vkmkklqvcaxnvqinqlklyvcnvkmnfvqfvqlhsiexvhvghiflkinmvknlimmn invivnlhymakkmkkfkt--- ---SPNQSERGFSLALEHGIGGARLSHNHRKQYNYVYQSLSLWQHILHDMFKLWYFAEID LLCGHRYQLSNTGQGLNRIQQCPNVGKIMHSILRQTQKKVGDDWVGSSVIHLGDHNVPNS LVFIDKYTQISRILSPIVLTIEYIPKITDPNLVAYIKNTFGGPQTLTKIILCDFFKHAFD GSGADNFFDAGSCIDGRLTSAWQWSAQIAKKPYYPIFYYQVL Frame B: fsnfkkkkirkkiifyslncelytklsnrfspnirfidpnntcsnnlgififw afftyqkrvkggvqnfkkkkrsirnvktkinksfgrp*yryrrrlnqsiiye rrnsryvlxmyrstsscmfamsrtlyslfnftpxrftvtyfktwsrtli ktsstsitwqrrkssk--- ---vqinrrevfhwlwnmalvvhvfltiivnnitmyinhspcgniffmiclnfgtlqkli fyadtdinyqtlvkvivfnnvqtlvklcivfyvklkkklvmiglvlplfiwviitfqtl wfssintlkslesvqsfplnifqrspiqilltsktplvvhklpkssfvislntlsm vvvpitfsmlalvlmvdlllgngllksqrnliiqyfiirf* Frame C: spifkkkrkekkYFISHYKIVNYIQNFQTDSSALILGLLINLIILVAIINWVYNLFSG HSSEHTKNELKVASKTSKKRRDQSEEMSKQNKLTKVLDNDLDDIDIEEDDSTNRKFESMS EDEETPGMCXECTDQPAEVVCLQCQDELCTVCSTSLHRXGSRRSHIFKNKHGQELDYDEL NKRDRQPPLHGKEDEKVQN--- ---sksigerffigfgtwhwwctsfsqsstilcisitllvatyssyvtlvlcrns fmrtqisiikhwsrsksystmskrwnyaystsnskkswlgwffrysfgsrsklf gfhrihsnlnpksnrfnhiyskdhrskfsclhqkhlwwstnfnqnhplfltrfrw wcrlfrcwllywinfclamvcsnrketllsnillsgf
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VHP208 (VHP208Q) /CSM/VH/VHP2-A/VHP208Q.Seq.d/ 1249 0.0 VHO745 (VHO745Q) /CSM/VH/VHO7-B/VHO745Q.Seq.d/ 1249 0.0 VHI553 (VHI553Q) /CSM/VH/VHI5-C/VHI553Q.Seq.d/ 1249 0.0 VHE160 (VHE160Q) /CSM/VH/VHE1-C/VHE160Q.Seq.d/ 1249 0.0 VHD241 (VHD241Q) /CSM/VH/VHD2-B/VHD241Q.Seq.d/ 1249 0.0 VHC810 (VHC810Q) /CSM/VH/VHC8-A/VHC810Q.Seq.d/ 1249 0.0 VHA539 (VHA539Q) /CSM/VH/VHA5-B/VHA539Q.Seq.d/ 1249 0.0 SFF581 (SFF581Q) /CSM/SF/SFF5-D/SFF581Q.Seq.d/ 1249 0.0 SFD256 (SFD256Q) /CSM/SF/SFD2-C/SFD256Q.Seq.d/ 1249 0.0 CHS293 (CHS293Q) /CSM/CH/CHS2-D/CHS293Q.Seq.d/ 1249 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AL035475\|AL035475.7 Plasmodium falciparum MAL4P2. 36 9e-05 14 AC104914\|AC104914.9 Mus musculus chromosome 9, clone RP23-108E20, complete sequence. 38 0.002 10 AL844509\|AL844509.1 Plasmodium falciparum chromosome 13. 34 0.003 20 AE014838\|AE014838.1 Plasmodium falciparum 3D7 chromosome 11 section 3 of 8 of the complete sequence. 34 0.004 14 AE014828\|AE014828.1 Plasmodium falciparum 3D7 chromosome 14 section 13 of 13 of the complete sequence. 36 0.006 15 AE014832\|AE014832.1 Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete sequence. 30 0.006 16 AC134426\|AC134426.7 Mus musculus chromosome 1 clone RP24-342A12 map 1, * SEQUENCING IN PROGRESS *, 2 ordered pieces. 50 0.007 8 AL844506\|AL844506.1 Plasmodium falciparum chromosome 7. 34 0.013 26 AC091873\|AC091873.2 Homo sapiens chromosome 5 clone CTD-2577N22, complete sequence. 36 0.016 9 AL929357\|AL929357.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 3/5. 34 0.016 16
dna update	2004. 3. 3
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value CP001575_110(CP001575\|pid:none) Micromonas sp. RCC299 chromosome... 277 6e-73 CR382131_1131(CR382131\|pid:none) Yarrowia lipolytica strain CLIB... 261 5e-68 CR940353_528(CR940353\|pid:none) Theileria annulata strain Ankara... 254 6e-66 CP001142_478(CP001142\|pid:none) Phaeodactylum tricornutum CCAP 1... 236 1e-60 AM910996_269(AM910996\|pid:none) Plasmodium knowlesi strain H chr... 228 3e-58 AL844507_105(AL844507\|pid:none) Plasmodium falciparum 3D7 chromo... 228 3e-58 CR380956_239(CR380956\|pid:none) Candida glabrata strain CBS138 c... 216 1e-54 CR382125_995(CR382125\|pid:none) Kluyveromyces lactis strain NRRL... 215 3e-54 CP000081_414(CP000081\|pid:none) Leishmania major chromosome 35, ... 211 3e-53 AM494971_416(AM494971\|pid:none) Leishmania braziliensis chromoso... 211 3e-53
protein update	2009. 5.12
PSORT	psg: 0.73 gvh: 0.50 alm: 0.11 top: 0.63 tms: 0.07 mit: 0.27 mip: 0.00 nuc: 0.04 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.03 gpi: 0.00 myr: 0.00 dna: 0.12 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 1.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 0.00 48.0 %: nuclear 28.0 %: cytoplasmic 12.0 %: mitochondrial 8.0 %: Golgi 4.0 %: vesicles of secretory system >> prediction for CFC817 is nuc
5' end seq. ID	CFC817F
5' end seq.	>CFC817F.Seq GTTCTCCAATTTTTAAAAAAAAAAGAAAATAAGAAAAAAAATAATATTTTATTAGTCATT ATAAAATTGTGAATTATATACAAAACTTTCAAACAGATAGTTCAGCCCTAATATTAGGTT TATTGATTAACCTAATAATACTTGTAGCAATAATTAATTGGGTATATAATTTATTTTCTG GGCATTCTTCTGAACATACCAAAAACGAGTTAAAGGTGGCGTCCAAAACTTCAAAAAAAA GAAGAGATCAATCTGAAGAAATGTCAAAACAAAATAAATTAACAAAAGTTTTGGATAACG ACCTTGATGATATAGATATAGAAGAAGATGACTCAACCAATCGTAAATTTGAATCTATGA GTGAAGATGAAGAAACTCCAGGTATGTGCTGNGAATGTACAGATCAACCAGCTGAAGTTG TATGTTTGCAATGTCAAGATGAACTTTGTACAGTTTGTTCAACTTCACTCCATAGAANAG GTTCACGTAGGTCACATATTTTTAAAAATAAACATGGTCAAGAACTTGATTATGATGAAT TAAATAAACGTGATCGTCAACCTCCATTACATGGCAAAGAAGATGAAAAAGTTCAAAACA ----------
Length of 5' end seq.	600
3' end seq. ID	CFC817Z
3' end seq.	>CFC817Z.Seq ----------AGTCCAAATCAATCGGAGAGAGGTTTTTCATTGGCTTTGGAACATGGCAT TGGTGGTGCACGTCTTTCTCACAATCATCGTAAACAATATAACTATGTATATCAATCACT CTCCTTGTGGCAACATATTCTTCATGATATGTTTAAACTTTGGTACTTTGCAGAAATTGA TCTTTTATGCGGACACAGATATCAATTATCAAACACTGGTCAAGGTCTAAATCGTATTCA ACAATGTCCAAACGTTGGTAAAATTATGCATAGTATTCTACGTCAAACTCAAAAAAAAGT TGGTGATGATTGGGTTGGTTCTTCCGTTATTCATTTGGGTGATCATAACGTTCCAAACTC TTTGGTTTTCATCGATAAATACACTCAAATCTCTAGAATCCTAAGTCCAATCGTTTTAAC CATTGAATATATTCCAAAGATCACCGATCCAAATTTAGTTGCTTACATCAAAAACACCTT TGGTGGTCCACAAACTTTAACCAAAATCATCCTTTGTGATTTCTTTAAACACGCTTTCGA TGGTAGTGGTGCCGATAACTTTTTCGATGCTGGCTCTTGTATTGATGGTAGATTAACTTC TGCTTGGCAATGGTCTGCTCAAATCGCAAAGAAACCTTATTATCCAATATTTTATTATCA GGTTTTAG
Length of 3' end seq.	658
Connected seq. ID	CFC817P
Connected seq.	>CFC817P.Seq GTTCTCCAATTTTTAAAAAAAAAAGAAAATAAGAAAAAAAATAATATTTTATTAGTCATT ATAAAATTGTGAATTATATACAAAACTTTCAAACAGATAGTTCAGCCCTAATATTAGGTT TATTGATTAACCTAATAATACTTGTAGCAATAATTAATTGGGTATATAATTTATTTTCTG GGCATTCTTCTGAACATACCAAAAACGAGTTAAAGGTGGCGTCCAAAACTTCAAAAAAAA GAAGAGATCAATCTGAAGAAATGTCAAAACAAAATAAATTAACAAAAGTTTTGGATAACG ACCTTGATGATATAGATATAGAAGAAGATGACTCAACCAATCGTAAATTTGAATCTATGA GTGAAGATGAAGAAACTCCAGGTATGTGCTGNGAATGTACAGATCAACCAGCTGAAGTTG TATGTTTGCAATGTCAAGATGAACTTTGTACAGTTTGTTCAACTTCACTCCATAGAANAG GTTCACGTAGGTCACATATTTTTAAAAATAAACATGGTCAAGAACTTGATTATGATGAAT TAAATAAACGTGATCGTCAACCTCCATTACATGGCAAAGAAGATGAAAAAGTTCAAAACA ----------AGTCCAAATCAATCGGAGAGAGGTTTTTCATTGGCTTTGGAACATGGCAT TGGTGGTGCACGTCTTTCTCACAATCATCGTAAACAATATAACTATGTATATCAATCACT CTCCTTGTGGCAACATATTCTTCATGATATGTTTAAACTTTGGTACTTTGCAGAAATTGA TCTTTTATGCGGACACAGATATCAATTATCAAACACTGGTCAAGGTCTAAATCGTATTCA ACAATGTCCAAACGTTGGTAAAATTATGCATAGTATTCTACGTCAAACTCAAAAAAAAGT TGGTGATGATTGGGTTGGTTCTTCCGTTATTCATTTGGGTGATCATAACGTTCCAAACTC TTTGGTTTTCATCGATAAATACACTCAAATCTCTAGAATCCTAAGTCCAATCGTTTTAAC CATTGAATATATTCCAAAGATCACCGATCCAAATTTAGTTGCTTACATCAAAAACACCTT TGGTGGTCCACAAACTTTAACCAAAATCATCCTTTGTGATTTCTTTAAACACGCTTTCGA TGGTAGTGGTGCCGATAACTTTTTCGATGCTGGCTCTTGTATTGATGGTAGATTAACTTC TGCTTGGCAATGGTCTGCTCAAATCGCAAAGAAACCTTATTATCCAATATTTTATTATCA GGTTTTAG
Length of connected seq.	1258
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas