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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFC802
Library CF
(Link to library)
Clone ID CFC802
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16381-1
Original site URL
Representative seq. ID CFC802P
(Link to Original site)
Representative DNA sequence 
>CFC802 (CFC802Q) /CSM/CF/CFC8-A/CFC802Q.Seq.d/
AAATTTTGTTCATATTCAAATTAAATATCAATACAATTAAAAAAAGTTAAAATTAAATTT
GTAAAATCAATTTGTAACAAAAACTAGTAATTTAAAAAAAAAAAAACCAAAAAAAAAAXX
XXXXXXXXTTGCGTTAAAAAACGTCATCATGATAGATGTGACCTCAAATGTAAGAGAGGT
TATGAATGTAAAATCAAACATGATGGCTCCAAATGTTGTGTCAAGAGAACTCCAAAGAGA
CCATGTTGTAAACCAAATTCATGTGCCAGAGATGAAAAATGTGTTGCCACCAAAGACAGA
ATCATTTGTGTAAAACCAACTTGTGATAATACTCGTTGTCCTCCAAATTACCATTGCATA
TGTGGTGATAAAATTGATGGTGTAAAATGTGTTCCAGATTGTAAGAAAGCAAGATGTGAT
GATGTCGAATGTCCAGATTTCCATAGATGTGTTGAAAGACGTGGTGGTATCTTAAGTTGT
GAATTTGATCCACCAAGACAACCAAGATCCCTTGATTGGGCTGAAAATGAAAATGATGAT
CGTGACTATGATGATCGTGACTATGGTGATGATGAATATGATGGTGATTATGATGGCCGT
GACGGTGACTATGATGGTGATTATGATGGTGATTATGATGATGACAATTATTATGGTGAT
GATGACTATGATACATGATTGGGACAATGATAATGATTGGGGTAATGATTGGGATAATGA
TTGGGACAATGAAGATGGTGATAATTGGAATGATGATGACTTCCAAGATGCAAATGATGA
ATGGGACTATTAAGCCATTAATTTTTTAAAAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
nfvhiqikyqyn*kklklnl*NQFVTKTSNLKKKKPKKK---

---CVKKRHHDRCDLKCKRGYECKIKHDGSKCCVKRTPKRPCCKPNSCARDEKCVATKDR
IICVKPTCDNTRCPPNYHCICGDKIDGVKCVPDCKKARCDDVECPDFHRCVERRGGILSC
EFDPPRQPRSLDWAENENDDRDYDDRDYGDDEYDGDYDGRDGDYDGDYDGDYDDDNYYGD
DDYDT*lgq***lg**lg**lgq*rw**le***lprck**mgllsh*ffkk
Translated Amino Acid sequence (All Frames) 
Frame A:
kfcsysn*isiqlkkvkikfvksicnkn**fkkkktkkk---

---lr*ktss**m*pqm*erl*m*nqt*wlqmlcqensketml*tkfmcqr*kmcchqrq
nhlcktnl**yslssklplhmw**n*wckmcsrl*eskm**crmsrfp*mc*ktwwylkl
*i*stkttkip*lg*k*k**s*l**s*lw***i*w*l*wp*r*l*w*l*w*l***qllw*
**l*ymigtmimigvmigimigtmkmviigmmmtskmqmmngtikplif*k

Frame B:
nfvhiqikyqyn*kklklnl*NQFVTKTSNLKKKKPKKK---

---CVKKRHHDRCDLKCKRGYECKIKHDGSKCCVKRTPKRPCCKPNSCARDEKCVATKDR
IICVKPTCDNTRCPPNYHCICGDKIDGVKCVPDCKKARCDDVECPDFHRCVERRGGILSC
EFDPPRQPRSLDWAENENDDRDYDDRDYGDDEYDGDYDGRDGDYDGDYDGDYDDDNYYGD
DDYDT*lgq***lg**lg**lgq*rw**le***lprck**mgllsh*ffkk

Frame C:
ilfifklnintikks*n*ickinl*qklvi*kkknqkk---

---alknvimidvtsnvrevmnvksnmmapnvvsrelqrdhvvnqihvpemknvlppkte
sfv*nqlviilvvlqitiayvviklmv*nvfqivrkqdvmmsnvqisidvlkdvvvs*vv
nlihqdnqdpliglkmkmmivtmmivtmvmmnmmvimmavtvtmmvimmvimmmtiimvm
mtmihdwdndndwgndwdndwdnedgdnwndddfqdandewdy*ainflk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFL210 (SFL210Q) /CSM/SF/SFL2-A/SFL210Q.Seq.d/                        803   0.0
SFL183 (SFL183Q) /CSM/SF/SFL1-D/SFL183Q.Seq.d/                        803   0.0
SFK812 (SFK812Q) /CSM/SF/SFK8-A/SFK812Q.Seq.d/                        803   0.0
SFK755 (SFK755Q) /CSM/SF/SFK7-C/SFK755Q.Seq.d/                        803   0.0
SFJ774 (SFJ774Q) /CSM/SF/SFJ7-D/SFJ774Q.Seq.d/                        803   0.0
SFJ558 (SFJ558Q) /CSM/SF/SFJ5-C/SFJ558Q.Seq.d/                        803   0.0
SFJ516 (SFJ516Q) /CSM/SF/SFJ5-A/SFJ516Q.Seq.d/                        803   0.0
SFI506 (SFI506Q) /CSM/SF/SFI5-A/SFI506Q.Seq.d/                        803   0.0
SFI442 (SFI442Q) /CSM/SF/SFI4-B/SFI442Q.Seq.d/                        803   0.0
SFI207 (SFI207Q) /CSM/SF/SFI2-A/SFI207Q.Seq.d/                        803   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X51892|X51892.1 Dictyostelium discoideum SP60 gene for spore coat protein.   803   0.0    3
M26239|M26239.1 D.discoideum spore coat protein SP60 gene, complete cds.   803   0.0    3
X52105|X52105.1 Dictyostelium discoideum SP60 gene for spore coat protein.    54   9e-06  2
M34546|M34546.1 D.discoideum spore coat 60 (sp60) gene, 5' flank.    62   1e-05  1
AC117267|AC117267.2 Dictyostelium discoideum chromosome 2 map 5836255-5862024 strain AX4, complete sequence.    56   3e-04  3
U25144|U25144.1 Dictyostelium discoideum spore coat protein SP87 (PspD) gene, complete cds.    56   8e-04  1
AC125039|AC125039.4 Mus musculus BAC clone RP23-335C3 from chromosome 6, complete sequence.    34   0.41   2
AC115703|AC115703.2 Mus musculus clone RP23-23C9, WORKING DRAFT SEQUENCE, 24 ordered pieces.    34   0.41   2
AC101245|AC101245.1 Mus musculus clone RP23-98B5, LOW-PASS SEQUENCE SAMPLING.    34   0.44   2
BX088711|BX088711.10 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEYP-39A12.    46   0.78   1
dna update 2004. 3. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P15270) RecName: Full=Spore coat protein SP60; Flags: Precursor...   307   3e-82
S72639_1(S72639|pid:none) PspB=prespore-specific gene {5' region...   105   2e-21
(P54704) RecName: Full=Spore coat protein SP85; AltName: Full=Ce...   104   3e-21
AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom...    67   5e-10
X52105_1(X52105|pid:none) Dictyostelium discoideum SP60 gene for...    60   1e-07
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;...    57   5e-07
AM746676_8717(AM746676|pid:none) Sorangium cellulosum 'So ce 56'...    49   2e-04
(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr...    47   0.001
Z81540_14(Z81540|pid:none) Caenorhabditis elegans Cosmid F46B3, ...    45   0.004
CR940353_318(CR940353|pid:none) Theileria annulata strain Ankara...    44   0.005
protein update 2009. 5.12
PSORT 

 psg: 0.23  gvh: 0.09  alm: 0.57  top: 0.53  tms: 0.00  mit: 0.39  mip: 0.05
 nuc: 0.40  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 72.0 %: nuclear
	 16.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for CFC802 is nuc
5' end seq. ID CFC802F
5' end seq. 
>CFC802F.Seq
AAATTTTGTTCATATTCAAATTAAATATCAATACAATTAAAAAAAGTTAAAATTAAATTT
GTAAAATCAATTTGTAACAAAAACTAGTAATTTAAAAAAAAAAAAACCAAAAAAAAAA--
--------
Length of 5' end seq. 118
3' end seq. ID CFC802Z
3' end seq. 
>CFC802Z.Seq
----------TTGCGTTAAAAAACGTCATCATGATAGATGTGACCTCAAATGTAAGAGAG
GTTATGAATGTAAAATCAAACATGATGGCTCCAAATGTTGTGTCAAGAGAACTCCAAAGA
GACCATGTTGTAAACCAAATTCATGTGCCAGAGATGAAAAATGTGTTGCCACCAAAGACA
GAATCATTTGTGTAAAACCAACTTGTGATAATACTCGTTGTCCTCCAAATTACCATTGCA
TATGTGGTGATAAAATTGATGGTGTAAAATGTGTTCCAGATTGTAAGAAAGCAAGATGTG
ATGATGTCGAATGTCCAGATTTCCATAGATGTGTTGAAAGACGTGGTGGTATCTTAAGTT
GTGAATTTGATCCACCAAGACAACCAAGATCCCTTGATTGGGCTGAAAATGAAAATGATG
ATCGTGACTATGATGATCGTGACTATGGTGATGATGAATATGATGGTGATTATGATGGCC
GTGACGGTGACTATGATGGTGATTATGATGGTGATTATGATGATGACAATTATTATGGTG
ATGATGACTATGATACATGATTGGGACAATGATAATGATTGGGGTAATGATTGGGATAAT
GATTGGGACAATGAAGATGGTGATAATTGGAATGATGATGACTTCCAAGATGCAAATGAT
GAATGGGACTATTAAGCCATTAATTTTTTAAAAAA
Length of 3' end seq. 685
Connected seq. ID CFC802P
Connected seq. 
>CFC802P.Seq
AAATTTTGTTCATATTCAAATTAAATATCAATACAATTAAAAAAAGTTAAAATTAAATTT
GTAAAATCAATTTGTAACAAAAACTAGTAATTTAAAAAAAAAAAAACCAAAAAAAAAA--
--------TTGCGTTAAAAAACGTCATCATGATAGATGTGACCTCAAATGTAAGAGAGGT
TATGAATGTAAAATCAAACATGATGGCTCCAAATGTTGTGTCAAGAGAACTCCAAAGAGA
CCATGTTGTAAACCAAATTCATGTGCCAGAGATGAAAAATGTGTTGCCACCAAAGACAGA
ATCATTTGTGTAAAACCAACTTGTGATAATACTCGTTGTCCTCCAAATTACCATTGCATA
TGTGGTGATAAAATTGATGGTGTAAAATGTGTTCCAGATTGTAAGAAAGCAAGATGTGAT
GATGTCGAATGTCCAGATTTCCATAGATGTGTTGAAAGACGTGGTGGTATCTTAAGTTGT
GAATTTGATCCACCAAGACAACCAAGATCCCTTGATTGGGCTGAAAATGAAAATGATGAT
CGTGACTATGATGATCGTGACTATGGTGATGATGAATATGATGGTGATTATGATGGCCGT
GACGGTGACTATGATGGTGATTATGATGGTGATTATGATGATGACAATTATTATGGTGAT
GATGACTATGATACATGATTGGGACAATGATAATGATTGGGGTAATGATTGGGATAATGA
TTGGGACAATGAAGATGGTGATAATTGGAATGATGATGACTTCCAAGATGCAAATGATGA
ATGGGACTATTAAGCCATTAATTTTTTAAAAAA
Length of connected seq. 803
Full length Seq ID -
Full length Seq. -
Length of full length seq. -