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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFC796
Library CF
(Link to library)
Clone ID CFC796
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11649-1
Original site URL
Representative seq. ID CFC796P
(Link to Original site)
Representative DNA sequence 
>CFC796 (CFC796Q) /CSM/CF/CFC7-D/CFC796Q.Seq.d/
CAGATTGTACAGAAGATGAATTAAAGAAAGCATATAGAAAGATGGCTGTTAAATACCATC
CAGATAAAAATCAAGGACCAGGTAAAGATGCAGCCGAAGCAAAATTTAAAGATATTAGTG
AAGCATATGAAGTTTTAAGTGATCCAGAGAAGAGAAAGATGTACGATAGTTATGGTTCTG
AAGGTATGAAGGAGAGTGGTTTCCATGCATCATCAGCTGAAGACCTCTTCTCACATTTCT
TTGGTGCAGGAGGTGGCGGTGGTGGATTTAGTTTCGGAGGTGGTGGTGGTGATGATTTTG
GTGGATTTAGTTTTGGTAATATGGGAGGTATGGGCGGCNTGGGTGGCNTGGGTGGNGGTN
NCXXXXXXXXXXGTGANAAACCAAATGTNAATTTCAAAANAAATGGTGANAATTTAATTT
ACNCCNAACGTTTAAAATTATTANACNCAATCGCTGGNAGTCAATTCATTANAAACNCAT
TGGATCAACGTAAACTTTGGGTCAATCATNANAAAGGTNANATAATTAANCAAGGTNANA
TGCGTTACANAAANAANGAAGGTATGCCAATTAAAGGNACCTCTAAAAAAGGTAAATTAA
TCATTGCTTTTGANATTGAANANCCNTCGAATNTTACAAATGATGATATTGAAAAACNCT
NTAAAATCTTACCAAAANCTGCCNCCCCNTNTGTTTCAAAATCTGATTGTAAANCGGTTG
GTCNCNCAAAGGTAAACNTTAANACCNACGAACAAAGNTCNCANGGNGGGGCNGGTGGNG
CTTANCAACAACANGGTGGNGCTTATGGNCNNCAAAAACNACAACAACAAGGTTTTAANC
CNGCNGATTTTGGNGCCCNATTTGGNGGNGGGGGGCCCCAACAAGCCCAACAGNGNCAAC
AACAANAAACNATTTAAAAAAAAAAAAACTAAAAATATCCAAAAATATCAAAATACCCAA
AAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
DCTEDELKKAYRKMAVKYHPDKNQGPGKDAAEAKFKDISEAYEVLSDPEKRKMYDSYGSE
GMKESGFHASSAEDLFSHFFGAGGGGGGFSFGGGGGDDFGGFSFGNMGGMGGXGGXGGGX
---

---XKPNVNFKXNGXNLIYXXRLKLLXXIAGSQFIXNXLDQRKLWVNHXKGXIIXQGXMR
YXXXEGMPIKGTSKKGKLIIAFXIEXPSNXTNDDIEKXXKILPKXAXPXVSKSDCKXVGX
XKVNXXTXEQXSXGGAGGAXQQXGGAYGXQKXQQQGFXPADFGAXFGGGGPQQAQQXQQQ
XTI*kkkn*kypkiskypk
Translated Amino Acid sequence (All Frames) 
Frame A:
qivqkmn*rkhierwllntiqikikdqvkmqpkqnlkilvkhmkf*viqrrerctivmvl
kv*rrvvsmhhqlktsshislvqevavvdlvsevvvvmilvdlvlviwevwaawvawvxv
---

---vxnqmxiskxmvxi*ftpnv*nyxtqslxvnslxthwinvnfgsixxkvx*lxkvxc
vtxxxkvcqlkxplkkvn*slllxlxxxrxlqmmilknxxksyqxlppxxfqnlivxrlv
xqr*tlxptnkxxxxgxvxlxnnxvxlmxxknxnnkvlxxxilxpxlxxggpnkpnxxnn
xkxfkkkktkniqkyqntqk

Frame B:
rlyrr*ikesi*kdgc*ipsr*ksrtr*rcsrski*ry**si*sfk*sreekdvr*lwf*
ryegewfpciis*rplltflwcrrwrwwi*frrwww**fwwi*fw*ygrygrxgwxgwxx
---

---*xtkcxfqxkw*xfnlxxtfkiixxnrwxsihxkxigst*tlgqsxxrxxn*xrxxa
lxkxxryan*rxl*kr*inhcf*x*xxxexyk**y*ktl*nltkxcxpxcfki*l*xgws
xkgkx*xxrtkxxxxgxwxlxttxwxlwxxkttttrf*xxxfwxpiwxxgaptsptxxtt
xnxlkkkklkisknikipk

Frame C:
DCTEDELKKAYRKMAVKYHPDKNQGPGKDAAEAKFKDISEAYEVLSDPEKRKMYDSYGSE
GMKESGFHASSAEDLFSHFFGAGGGGGGFSFGGGGGDDFGGFSFGNMGGMGGXGGXGGGX
---

---XKPNVNFKXNGXNLIYXXRLKLLXXIAGSQFIXNXLDQRKLWVNHXKGXIIXQGXMR
YXXXEGMPIKGTSKKGKLIIAFXIEXPSNXTNDDIEKXXKILPKXAXPXVSKSDCKXVGX
XKVNXXTXEQXSXGGAGGAXQQXGGAYGXQKXQQQGFXPADFGAXFGGGGPQQAQQXQQQ
XTI*kkkn*kypkiskypk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFC796 (CFC796Q) /CSM/CF/CFC7-D/CFC796Q.Seq.d/                       1261   0.0
CHB294 (CHB294Q) /CSM/CH/CHB2-D/CHB294Q.Seq.d/                        692   0.0
SFH226 (SFH226Q) /CSM/SF/SFH2-B/SFH226Q.Seq.d/                        674   0.0
CFG155 (CFG155Q) /CSM/CF/CFG1-C/CFG155Q.Seq.d/                        674   0.0
CHC270 (CHC270Q) /CSM/CH/CHC2-C/CHC270Q.Seq.d/                        656   0.0
CFJ662 (CFJ662Q) /CSM/CF/CFJ6-C/CFJ662Q.Seq.d/                        644   0.0
SFB251 (SFB251Q) /CSM/SF/SFB2-C/SFB251Q.Seq.d/                        615   e-175
AFL309 (AFL309Q) /CSM/AF/AFL3-A/AFL309Q.Seq.d/                        583   e-165
SLH333 (SLH333Q) /CSM/SL/SLH3-B/SLH333Q.Seq.d/                        557   e-157
SLE413 (SLE413Q) /CSM/SL/SLE4-A/SLE413Q.Seq.d/                        557   e-157
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BM309208|BM309208.1 sak55h09.y1 Gm-c1036 Glycine max cDNA clone SOYBEAN CLONE ID:mRNA sequence.    58   6e-07  2
BM308902|BM308902.1 sak51h04.y1 Gm-c1036 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1036-6871 5' similar to TR:O24074 O24074 DNAJ-LIKE PROTEIN. ;, mRNA sequence.    58   7e-07  2
AW705420|AW705420.1 sk48h03.y1 Gm-c1019 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1019-5838 5' similar to TR:O24074 O24074 DNAJ-LIKE PROTEIN. ;, mRNA sequence.    58   8e-07  2
AW569262|AW569262.1 si64h03.y1 Gm-r1030 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-r1030-3726 5' similar to TR:O24074 O24074 DNAJ-LIKE PROTEIN. ;, mRNA sequence.    58   8e-07  2
AW568830|AW568830.1 si61g08.y1 Gm-r1030 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-r1030-3447 5' similar to TR:O24074 O24074 DNAJ-LIKE PROTEIN. ;, mRNA sequence.    58   9e-07  2
CF806266|CF806266.1 psHB007xC07f USDA-IFAFS:Expression of Phytophthora sojae genes during infection and propagation Phytophthora sojae cDNA clone sHB007C07 5, mRNA sequence.    58   1e-06  2
CK245502|CK245502.1 EST729139 potato callus cDNA library, normalized and full-length Solanum tuberosum cDNA clone POCAE75 5' end, mRNA sequence.    62   2e-06  2
CK233609|CK233609.1 re16f08.y1 Meloidogyne incognita parasitic J2 J3 SL1 TOPO v1 Meloidogyne incognita cDNA 5' similar to TR:Q9VPY9 Q9VPY9 CG5001 PROTEIN. ;contains element MER22 repetitive element ;, mRNA sequence.    38   7e-06  4
BE249385|BE249385.2 NF014D02LF1F1016 Developing leaf Medicago truncatula cDNA clone NF014D02LF 5', mRNA sequence.    48   1e-05  2
CB891746|CB891746.1 EST648715 KV3 Medicago truncatula cDNA clone KV3-51J4, mRNA sequence.    48   1e-05  2
dna update 2004. 3. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54ED3) RecName: Full=DnaJ homolog subfamily A member 1 homolog;     187   4e-46
AK240890_1(AK240890|pid:none) Oryza sativa Japonica Group cDNA, ...    98   5e-19
CP001333_283(CP001333|pid:none) Micromonas sp. RCC299 chromosome...    95   4e-18
CP000592_51(CP000592|pid:none) Ostreococcus lucimarinus CCE9901 ...    94   9e-18
BC166524_1(BC166524|pid:none) Rattus norvegicus DnaJ (Hsp40) hom...    94   9e-18
(O75953) RecName: Full=DnaJ homolog subfamily B member 5; AltNam...    93   1e-17
AL355377_7(AL355377|pid:none) Human DNA sequence from clone RP11...    93   1e-17
AL355377_6(AL355377|pid:none) Human DNA sequence from clone RP11...    93   1e-17
AK299647_1(AK299647|pid:none) Homo sapiens cDNA FLJ56830 complet...    93   1e-17
AF087870_1(AF087870|pid:none) Homo sapiens heat shock protein 40...    93   1e-17
protein update 2009. 5.12
PSORT 

 psg: 0.75  gvh: 0.19  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.06  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 36.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for CFC796 is cyt
5' end seq. ID CFC796F
5' end seq. 
>CFC796F.Seq
CAGATTGTACAGAAGATGAATTAAAGAAAGCATATAGAAAGATGGCTGTTAAATACCATC
CAGATAAAAATCAAGGACCAGGTAAAGATGCAGCCGAAGCAAAATTTAAAGATATTAGTG
AAGCATATGAAGTTTTAAGTGATCCAGAGAAGAGAAAGATGTACGATAGTTATGGTTCTG
AAGGTATGAAGGAGAGTGGTTTCCATGCATCATCAGCTGAAGACCTCTTCTCACATTTCT
TTGGTGCAGGAGGTGGCGGTGGTGGATTTAGTTTCGGAGGTGGTGGTGGTGATGATTTTG
GTGGATTTAGTTTTGGTAATATGGGAGGTATGGGCGGCNTGGGTGGCNTGGGTGGNGGTN
NC----------
Length of 5' end seq. 362
3' end seq. ID CFC796Z
3' end seq. 
>CFC796Z.Seq
----------GTGANAAACCAAATGTNAATTTCAAAANAAATGGTGANAATTTAATTTAC
NCCNAACGTTTAAAATTATTANACNCAATCGCTGGNAGTCAATTCATTANAAACNCATTG
GATCAACGTAAACTTTGGGTCAATCATNANAAAGGTNANATAATTAANCAAGGTNANATG
CGTTACANAAANAANGAAGGTATGCCAATTAAAGGNACCTCTAAAAAAGGTAAATTAATC
ATTGCTTTTGANATTGAANANCCNTCGAATNTTACAAATGATGATATTGAAAAACNCTNT
AAAATCTTACCAAAANCTGCCNCCCCNTNTGTTTCAAAATCTGATTGTAAANCGGTTGGT
CNCNCAAAGGTAAACNTTAANACCNACGAACAAAGNTCNCANGGNGGGGCNGGTGGNGCT
TANCAACAACANGGTGGNGCTTATGGNCNNCAAAAACNACAACAACAAGGTTTTAANCCN
GCNGATTTTGGNGCCCNATTTGGNGGNGGGGGGCCCCAACAAGCCCAACAGNGNCAACAA
CAANAAACNATTTAAAAAAAAAAAAACTAAAAATATCCAAAAATATCAAAATACCCAAAA
A
Length of 3' end seq. 591
Connected seq. ID CFC796P
Connected seq. 
>CFC796P.Seq
CAGATTGTACAGAAGATGAATTAAAGAAAGCATATAGAAAGATGGCTGTTAAATACCATC
CAGATAAAAATCAAGGACCAGGTAAAGATGCAGCCGAAGCAAAATTTAAAGATATTAGTG
AAGCATATGAAGTTTTAAGTGATCCAGAGAAGAGAAAGATGTACGATAGTTATGGTTCTG
AAGGTATGAAGGAGAGTGGTTTCCATGCATCATCAGCTGAAGACCTCTTCTCACATTTCT
TTGGTGCAGGAGGTGGCGGTGGTGGATTTAGTTTCGGAGGTGGTGGTGGTGATGATTTTG
GTGGATTTAGTTTTGGTAATATGGGAGGTATGGGCGGCNTGGGTGGCNTGGGTGGNGGTN
NC----------GTGANAAACCAAATGTNAATTTCAAAANAAATGGTGANAATTTAATTT
ACNCCNAACGTTTAAAATTATTANACNCAATCGCTGGNAGTCAATTCATTANAAACNCAT
TGGATCAACGTAAACTTTGGGTCAATCATNANAAAGGTNANATAATTAANCAAGGTNANA
TGCGTTACANAAANAANGAAGGTATGCCAATTAAAGGNACCTCTAAAAAAGGTAAATTAA
TCATTGCTTTTGANATTGAANANCCNTCGAATNTTACAAATGATGATATTGAAAAACNCT
NTAAAATCTTACCAAAANCTGCCNCCCCNTNTGTTTCAAAATCTGATTGTAAANCGGTTG
GTCNCNCAAAGGTAAACNTTAANACCNACGAACAAAGNTCNCANGGNGGGGCNGGTGGNG
CTTANCAACAACANGGTGGNGCTTATGGNCNNCAAAAACNACAACAACAAGGTTTTAANC
CNGCNGATTTTGGNGCCCNATTTGGNGGNGGGGGGCCCCAACAAGCCCAACAGNGNCAAC
AACAANAAACNATTTAAAAAAAAAAAAACTAAAAATATCCAAAAATATCAAAATACCCAA
AAA
Length of connected seq. 953
Full length Seq ID -
Full length Seq. -
Length of full length seq. -