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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFC785
Library CF
(Link to library)
Clone ID CFC785
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CFC785P
(Link to Original site)
Representative DNA sequence 
>CFC785 (CFC785Q) /CSM/CF/CFC7-D/CFC785Q.Seq.d/
ACTTCACAAAAAACATTTTCTAATAAAACAGATAAATTAAAAAATGACTACCTTTAACGA
ATATCCATTCTTGGCTGAATTAGGCATTAAAGCTGAAAATAATGATGGAGTCTTCAATGG
AAAATGGGGAGGTGCTGGTGAAATCATCAAATGTTTAAATCCAACAAATAATAAAGTTAT
TGCAACTGTTAGAGGTGCTGCACCAGAAGAATATGAAACATGTATTCAAGCAATGTTAGC
AGCAAAAGTAAAATGGGCATTAACACCAGCTCCAAGAAGAGGTGAAATTGTTAGATTAAT
TGGTCAAGCCATGAGAGAAAAAATTGAACCATTATCAAAATTAATTTCATTAGAAATGGG
TAAAATTTACATTGAAGCTAAAGGTGAAGTACAAGAATTCATTGACGTATGCGATTATGC
AACTGGTTTAAGTAGATCAATCAATGGTCAAGTGATGCCATCTGAACGTCCAAATCACAT
TTTAATGGAAACCTGGAATCCATTAGGTTTAGTTGGTATCATTACTGCTTTCAATTTCCC
ATGTGCCGTACTTGGTTGGAATGCTGCAATCTCAATGATTTGCGXXXXXXXXXXATTAAA
ATCGGTAATCCACTTGAAGAAGGTGTTTTAGTAGGTCCACTCCACACCCAAAGCGCTGTT
AAAGAATTCANTGAAGGTCTTGAAGAAATAAAAAAGCAAGGTGGTAAGGTCGTCATTGGT
GGTAATAAACTCGATATCAGTGGTGGAAACTTTGTTGAACCAACCGTCGTTGCCATTGAA
CATGATGCTCCAATCGTAAAGACTGAACTCTTTGTTCCAATTCTCTACATAATGAAATTC
AAAAATCTTGACGATGCTTTTGCCTGGAATAATGAAGTCCCACAAGGTCTCTCATCTTCC
CTCTTCACAAACAATCAAAAGAATATCTTCAAATGGCTTGGACCTACCGGATCTGACTGT
GGTATAGTTAACGTAAATGTAGCTACAAACGGTGCNGAAATTGGTGGTGCCTTTGGAGGT
AAAAAGAGACCGGAGGTGGTAGAGAATCTGGCTCAGACAGCNGAAACAGTATTGCCGTCG
AGTCTANACAATCAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
lhkkhflikqin*KMTTFNEYPFLAELGIKAENNDGVFNGKWGGAGEIIKCLNPTNNKVI
ATVRGAAPEEYETCIQAMLAAKVKWALTPAPRRGEIVRLIGQAMREKIEPLSKLISLEMG
KIYIEAKGEVQEFIDVCDYATGLSRSINGQVMPSERPNHILMETWNPLGLVGIITAFNFP
CAVLGWNAAISMIC---

---IKIGNPLEEGVLVGPLHTQSAVKEFXEGLEEIKKQGGKVVIGGNKLDISGGNFVEPT
VVAIEHDAPIVKTELFVPILYIMKFKNLDDAFAWNNEVPQGLSSSLFTNNQKNIFKWLGP
TGSDCGIVNVNVATNGAEIGGAFGGKKRPEVVENLAQTAETVLPSSLXNQ
Translated Amino Acid sequence (All Frames) 
Frame A:
tsqktfsnktdklkndyl*risilg*irh*s*k**wslqwkmgrcw*nhqmfksnk**sy
cnc*rcctrri*nmyssnvsskskmgintsskkr*nc*inwssherkn*tiikinfirng
*nlh*s*r*strih*rmrlcnwfk*inqwssdai*tskshfngnlesirfswyhycfqfp
mcrtwleccnlndl---

---IKIGNPLEEGVLVGPLHTQSAVKEFXEGLEEIKKQGGKVVIGGNKLDISGGNFVEPT
VVAIEHDAPIVKTELFVPILYIMKFKNLDDAFAWNNEVPQGLSSSLFTNNQKNIFKWLGP
TGSDCGIVNVNVATNGAEIGGAFGGKKRPEVVENLAQTAETVLPSSLXNQ

Frame B:
lhkkhflikqin*KMTTFNEYPFLAELGIKAENNDGVFNGKWGGAGEIIKCLNPTNNKVI
ATVRGAAPEEYETCIQAMLAAKVKWALTPAPRRGEIVRLIGQAMREKIEPLSKLISLEMG
KIYIEAKGEVQEFIDVCDYATGLSRSINGQVMPSERPNHILMETWNPLGLVGIITAFNFP
CAVLGWNAAISMIC---

---lksvihlkkvf**vhstpkallknsxkvlkk*kskvvrsslvvinsisvvetllnqp
slplnmmlqs*rlnslfqfst**nskiltmllpgimkshkvshlpssqtikrissngldl
pdltvv*lt*m*lqtvxklvvplevkrdrrw*riwlrqxkqycrrvxti

Frame C:
ftknif**nr*ikk*lpltnihswln*alklkimmessmengevlvkssnv*iqqiikll
qllevlhqknmkhvfkqc*qqk*ngh*hqlqeevklld*lvkp*ekklnhyqn*fh*kwv
kftlklkvkyknsltyaimqlv*vdqsmvk*chlnvqitf*wkpgih*v*lvslllsish
vpylvgmlqsq*fa---

---*nr*st*rrcfsrstphpkrc*rix*rs*rnkkarw*grhww**tryqwwklc*tnr
rch*t*csnrkd*tlcsnslhneiqks*rcfcle**sptrslifplhkqskeylqmawty
ri*lwys*rkcsykrcxnwwclwr*ketgggresgsdsxnsiavesxqs
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFK658 (VFK658Q) /CSM/VF/VFK6-C/VFK658Q.Seq.d/                       1158   0.0
VFB844 (VFB844Q) /CSM/VF/VFB8-B/VFB844Q.Seq.d/                       1158   0.0
SFK705 (SFK705Q) /CSM/SF/SFK7-A/SFK705Q.Seq.d/                       1158   0.0
SFI562 (SFI562Q) /CSM/SF/SFI5-C/SFI562Q.Seq.d/                       1158   0.0
SFH440 (SFH440Q) /CSM/SF/SFH4-B/SFH440Q.Seq.d/                       1158   0.0
SFG478 (SFG478Q) /CSM/SF/SFG4-D/SFG478Q.Seq.d/                       1158   0.0
SFF818 (SFF818Q) /CSM/SF/SFF8-A/SFF818Q.Seq.d/                       1158   0.0
SFE780 (SFE780Q) /CSM/SF/SFE7-D/SFE780Q.Seq.d/                       1158   0.0
SFE761 (SFE761Q) /CSM/SF/SFE7-C/SFE761Q.Seq.d/                       1158   0.0
SFD744 (SFD744Q) /CSM/SF/SFD7-B/SFD744Q.Seq.d/                       1158   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117076|AC117076.3 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.   835   0.0    8
D88434|D88434.1 Malus domestica mRNA for protein abundantly expressed during apple fruit development, complete cds.    72   7e-15  2
BU042811|BU042811.1 PP_LEa0014A23f Peach developing fruit mesocarp Prunus persica cDNA clone PP_LEa0014A23f, mRNA sequence.    74   7e-12  2
AY034889|AY034889.1 Tortula ruralis aldehyde dehydrogenase ALDH2 (RNP129b) mRNA, complete cds.    46   2e-10  4
BU111535|BU111535.1 603126401F1 CSEQCHL13 Gallus gallus cDNA clone ChEST96a2 5', mRNA sequence.    42   4e-08  4
BU488446|BU488446.1 604125245F1 CSEQRBN36 Gallus gallus cDNA clone ChEST943i12 5', mRNA sequence.    42   6e-08  4
BU319046|BU319046.1 603486759F1 CSEQCHN62 Gallus gallus cDNA clone ChEST382f16 5', mRNA sequence.    42   6e-08  4
BU406760|BU406760.1 604140323F1 CSEQCHN59 Gallus gallus cDNA clone ChEST972m5 5', mRNA sequence.    42   7e-08  4
BU106121|BU106121.1 603006693F1 CSEQCHL01 Gallus gallus cDNA clone ChEST25i24 5', mRNA sequence.    42   7e-08  4
BU491071|BU491071.1 604128885F1 CSEQRBN37 Gallus gallus cDNA clone ChEST952i22 5', mRNA sequence.    42   9e-08  4
dna update 2004. 3. 2
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P83401) RecName: Full=Putative aldehyde dehydrogenase family 7 ...   369   e-100
BC044367_1(BC044367|pid:none) Danio rerio aldehyde dehydrogenase...   228   2e-58
EF678715_1(EF678715|pid:none) Picea sitchensis clone WS0295_M17 ...   226   1e-57
BT044648_1(BT044648|pid:none) Salmo salar clone ssal-rgf-001-326...   223   1e-56
AF323586_1(AF323586|pid:none) Oryza sativa aldehyde dehydrogenas...   220   8e-56
AY883858_1(AY883858|pid:none) Sterkiella histriomuscorum turgor ...   219   2e-55
AY847462_1(AY847462|pid:none) Acanthopagrus schlegelii antiquiti...   217   6e-55
BT067707_1(BT067707|pid:none) Zea mays full-length cDNA clone ZM...   216   1e-54
AK297365_1(AK297365|pid:none) Homo sapiens cDNA FLJ56008 complet...   215   2e-54
(P49419) RecName: Full=Alpha-aminoadipic semialdehyde dehydrogen...   215   2e-54
protein update 2009. 5.12
PSORT 

 psg: 0.78  gvh: 0.31  alm: 0.29  top: 0.50  tms: 0.07  mit: 0.21  mip: 0.00
 nuc: 0.03  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: nuclear
	 24.0 %: endoplasmic reticulum
	 20.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  8.0 %: plasma membrane
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for CFC785 is nuc
5' end seq. ID CFC785F
5' end seq. 
>CFC785F.Seq
ACTTCACAAAAAACATTTTCTAATAAAACAGATAAATTAAAAAATGACTACCTTTAACGA
ATATCCATTCTTGGCTGAATTAGGCATTAAAGCTGAAAATAATGATGGAGTCTTCAATGG
AAAATGGGGAGGTGCTGGTGAAATCATCAAATGTTTAAATCCAACAAATAATAAAGTTAT
TGCAACTGTTAGAGGTGCTGCACCAGAAGAATATGAAACATGTATTCAAGCAATGTTAGC
AGCAAAAGTAAAATGGGCATTAACACCAGCTCCAAGAAGAGGTGAAATTGTTAGATTAAT
TGGTCAAGCCATGAGAGAAAAAATTGAACCATTATCAAAATTAATTTCATTAGAAATGGG
TAAAATTTACATTGAAGCTAAAGGTGAAGTACAAGAATTCATTGACGTATGCGATTATGC
AACTGGTTTAAGTAGATCAATCAATGGTCAAGTGATGCCATCTGAACGTCCAAATCACAT
TTTAATGGAAACCTGGAATCCATTAGGTTTAGTTGGTATCATTACTGCTTTCAATTTCCC
ATGTGCCGTACTTGGTTGGAATGCTGCAATCTCAATGATTTGCG----------
Length of 5' end seq. 584
3' end seq. ID CFC785Z
3' end seq. 
>CFC785Z.Seq
----------ATTAAAATCGGTAATCCACTTGAAGAAGGTGTTTTAGTAGGTCCACTCCA
CACCCAAAGCGCTGTTAAAGAATTCANTGAAGGTCTTGAAGAAATAAAAAAGCAAGGTGG
TAAGGTCGTCATTGGTGGTAATAAACTCGATATCAGTGGTGGAAACTTTGTTGAACCAAC
CGTCGTTGCCATTGAACATGATGCTCCAATCGTAAAGACTGAACTCTTTGTTCCAATTCT
CTACATAATGAAATTCAAAAATCTTGACGATGCTTTTGCCTGGAATAATGAAGTCCCACA
AGGTCTCTCATCTTCCCTCTTCACAAACAATCAAAAGAATATCTTCAAATGGCTTGGACC
TACCGGATCTGACTGTGGTATAGTTAACGTAAATGTAGCTACAAACGGTGCNGAAATTGG
TGGTGCCTTTGGAGGTAAAAAGAGACCGGAGGTGGTAGAGAATCTGGCTCAGACAGCNGA
AACAGTATTGCCGTCGAGTCTANACAATCAA
Length of 3' end seq. 501
Connected seq. ID CFC785P
Connected seq. 
>CFC785P.Seq
ACTTCACAAAAAACATTTTCTAATAAAACAGATAAATTAAAAAATGACTACCTTTAACGA
ATATCCATTCTTGGCTGAATTAGGCATTAAAGCTGAAAATAATGATGGAGTCTTCAATGG
AAAATGGGGAGGTGCTGGTGAAATCATCAAATGTTTAAATCCAACAAATAATAAAGTTAT
TGCAACTGTTAGAGGTGCTGCACCAGAAGAATATGAAACATGTATTCAAGCAATGTTAGC
AGCAAAAGTAAAATGGGCATTAACACCAGCTCCAAGAAGAGGTGAAATTGTTAGATTAAT
TGGTCAAGCCATGAGAGAAAAAATTGAACCATTATCAAAATTAATTTCATTAGAAATGGG
TAAAATTTACATTGAAGCTAAAGGTGAAGTACAAGAATTCATTGACGTATGCGATTATGC
AACTGGTTTAAGTAGATCAATCAATGGTCAAGTGATGCCATCTGAACGTCCAAATCACAT
TTTAATGGAAACCTGGAATCCATTAGGTTTAGTTGGTATCATTACTGCTTTCAATTTCCC
ATGTGCCGTACTTGGTTGGAATGCTGCAATCTCAATGATTTGCG----------ATTAAA
ATCGGTAATCCACTTGAAGAAGGTGTTTTAGTAGGTCCACTCCACACCCAAAGCGCTGTT
AAAGAATTCANTGAAGGTCTTGAAGAAATAAAAAAGCAAGGTGGTAAGGTCGTCATTGGT
GGTAATAAACTCGATATCAGTGGTGGAAACTTTGTTGAACCAACCGTCGTTGCCATTGAA
CATGATGCTCCAATCGTAAAGACTGAACTCTTTGTTCCAATTCTCTACATAATGAAATTC
AAAAATCTTGACGATGCTTTTGCCTGGAATAATGAAGTCCCACAAGGTCTCTCATCTTCC
CTCTTCACAAACAATCAAAAGAATATCTTCAAATGGCTTGGACCTACCGGATCTGACTGT
GGTATAGTTAACGTAAATGTAGCTACAAACGGTGCNGAAATTGGTGGTGCCTTTGGAGGT
AAAAAGAGACCGGAGGTGGTAGAGAATCTGGCTCAGACAGCNGAAACAGTATTGCCGTCG
AGTCTANACAATCAA
Length of connected seq. 1085
Full length Seq ID -
Full length Seq. -
Length of full length seq. -