CFC773
Library CF
(Link to library)
Clone ID CFC773
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16464-1
Original site URL
Representative seq. ID CFC773Z
(Link to Original site)
Representative DNA sequence
>CFC773 (CFC773Q) /CSM/CF/CFC7-D/CFC773Q.Seq.d/
XXXXXXXXXXTGGTTTCATTTTATTCATGACAGATCGTTATAGAAAGAAAAAGAATTTCA
TACTTTACCCAACTGGCAAGAGTCGTATGGAGCCAATTGGTATCATCATCTTTGCATCAT
TAATGGCAACTGTGTCTTTGAATCTTTTATATGAAGGTGTATCAAAATTAATTTCACGTC
CAGAAGACCCAGAAATAACACTCTCAACAAAGATTTTAATGTACTCTTTGGTTGGTCTTG
CAATTTTAATCAAAGTAGCAATGTTTTTATATTGTCGTAGATTAACTCATTCATCATCTT
CAATGATTTTAGCAACCGATCATAGAAATGATATCGTGGTTAATTCATTTGGTGTTGGTA
TGGCTATTTTAGGTCAAAATTGGGTTTGGTGGTTAGATCCAAGTGGTGCAATCGTTGTTG
CTTTAATCATTTTACGTTCTTGGACTTCTGAAGCCTATGAACAAATTCAATTATTAGTTG
GTAAATCAGCATCACCAGAATTCCTTCAAAAATTAACTTTTATAGCTTTAACTCATCATC
CTGAAGTACTTAAAGTTGATACTTGTAGAGCATTCCATGTTGGTAATAATTTATATGTTG
AAGTTGATATAGTCTTACCACCATCAATGCCATTGGTTCAAACTCATGATATTGGTGAAT
CACTT
sequence update 2001. 6. 1
Translated Amino Acid sequence
---GFILFMTDRYRKKKNFILYPTGKSRMEPIGIIIFASLMATVSLNLLYEGVSKLISRP
EDPEITLSTKILMYSLVGLAILIKVAMFLYCRRLTHSSSSMILATDHRNDIVVNSFGVGM
AILGQNWVWWLDPSGAIVVALIILRSWTSEAYEQIQLLVGKSASPEFLQKLTFIALTHHP
EVLKVDTCRAFHVGNNLYVEVDIVLPPSMPLVQTHDIGESL


Translated Amino Acid sequence (All Frames)
Frame A:
---GFILFMTDRYRKKKNFILYPTGKSRMEPIGIIIFASLMATVSLNLLYEGVSKLISRP
EDPEITLSTKILMYSLVGLAILIKVAMFLYCRRLTHSSSSMILATDHRNDIVVNSFGVGM
AILGQNWVWWLDPSGAIVVALIILRSWTSEAYEQIQLLVGKSASPEFLQKLTFIALTHHP
EVLKVDTCRAFHVGNNLYVEVDIVLPPSMPLVQTHDIGESL


Frame B:
---vsfys*qivierkrisyftqlarvvwsqlvssslhh*wqlcl*ifymkvyqn*fhvq
ktqk*hsqqrf*ctlwlvlqf*sk*qcfyivvd*lihhlq*f*qpiiemiswlihlvlvw
lf*vkigfgg*iqvvqslll*sfyvlgllkpmnkfny*lvnqhhqnsfkn*ll*l*liil
kylklilvehsmlviiymlkli*syhhqchwfklmilvnh


Frame C:
---fhfihdrsl*kekefhtlpnwqesyganwyhhlciingncvfesfi*rcikinftsr
rprnntlnkdfnvlfgwscnfnqssnvfils*insfiifndfsnrs*k*yrg*fiwcwyg
yfrsklglvvrskwcnrccfnhftfldf*sl*tnsiisw*isitripskinfysfnsss*
st*s*yl*sipcw**fic*s*yslttinaigsns*yw*it


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFC773 (CFC773Q) /CSM/CF/CFC7-D/CFC773Q.Seq.d/ 1298 0.0
AFK811 (AFK811Q) /CSM/AF/AFK8-A/AFK811Q.Seq.d/ 1298 0.0
AFG186 (AFG186Q) /CSM/AF/AFG1-D/AFG186Q.Seq.d/ 1298 0.0
AFA617 (AFA617Q) /CSM/AF/AFA6-A/AFA617Q.Seq.d/ 1285 0.0
VFH619 (VFH619Q) /CSM/VF/VFH6-A/VFH619Q.Seq.d/ 1277 0.0
CFH740 (CFH740Q) /CSM/CF/CFH7-B/CFH740Q.Seq.d/ 1156 0.0
SFG327 (SFG327Q) /CSM/SF/SFG3-B/SFG327Q.Seq.d/ 1120 0.0
AFB843 (AFB843Q) /CSM/AF/AFB8-B/AFB843Q.Seq.d/ 1112 0.0
SFK666 (SFK666Q) /CSM/SF/SFK6-C/SFK666Q.Seq.d/ 1041 0.0
VFJ381 (VFJ381Q) /CSM/VF/VFJ3-D/VFJ381Q.Seq.d/ 1031 0.0

own update 2001.11.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC111751|AC111751.4 Rattus norvegicus clone CH230-173M19, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces. 34 6e-04 8
AC115724|AC115724.7 Mus musculus clone RP23-20L18, WORKING DRAFT SEQUENCE, 6 unordered pieces. 34 7e-04 12
AC131920|AC131920.7 Mus musculus chromosome 14, clone RP23-450N9, complete sequence. 38 0.001 7
AC116327|AC116327.4 Mus musculus clone RP24-68L14, complete sequence. 36 0.003 9
AC147269|AC147269.2 Mus musculus chromosome UNK clone RP24-281E6, *** SEQUENCING IN PROGRESS ***, 56 unordered pieces. 42 0.007 4
AC103437|AC103437.8 Rattus norvegicus clone CH230-160E7, *** SEQUENCING IN PROGRESS ***, 1 ordered piece. 36 0.009 8
AC131840|AC131840.3 Rattus norvegicus clone CH230-127A23, *** SEQUENCING IN PROGRESS ***, 1 ordered piece. 34 0.011 9
AC134628|AC134628.2 Rattus norvegicus clone CH230-47J23, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces. 36 0.015 10
AC103537|AC103537.6 Rattus norvegicus clone CH230-164G7, WORKING DRAFT SEQUENCE, 3 unordered pieces. 34 0.018 8
AC101711|AC101711.7 Mus musculus, clone RP23-279K17, complete sequence. 38 0.019 7
dna update 2004. 3. 2
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CP001574_635(CP001574|pid:none) Micromonas sp. RCC299 chromosome... 197 2e-49
CP000583_274(CP000583|pid:none) Ostreococcus lucimarinus CCE9901... 196 5e-49
CR954203_270(CR954203|pid:none) Ostreococcus tauri strain OTTH05... 189 5e-47
EF677555_1(EF677555|pid:none) Picea sitchensis clone WS02770_I19... 187 3e-46
AY181258_1(AY181258|pid:none) Stylosanthes hamata cation diffusi... 185 1e-45
AP003231_3(AP003231|pid:none) Oryza sativa Japonica Group genomi... 181 1e-44
EU973024_1(EU973024|pid:none) Zea mays clone 391920 unknown mRNA. 181 2e-44
AY181257_1(AY181257|pid:none) Stylosanthes hamata cation diffusi... 181 2e-44
AC107226_21(AC107226|pid:none) Oryza sativa (japonica cultivar-g... 181 2e-44
AP008209_797(AP008209|pid:none) Oryza sativa (japonica cultivar-... 181 2e-44
protein update 2009. 5.12
PSORT

psg: 0.52 gvh: 0.49 alm: 0.25 top: 0.20 tms: 0.20 mit: 0.31 mip: 0.05
nuc: 0.04 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

32.0 %: endoplasmic reticulum
24.0 %: mitochondrial
16.0 %: plasma membrane
8.0 %: nuclear
8.0 %: extracellular, including cell wall
4.0 %: Golgi
4.0 %: peroxisomal
4.0 %: vesicles of secretory system

>> prediction for CFC773 is end

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CFC773Z
3' end seq.
>CFC773Z.Seq
----------TGGTTTCATTTTATTCATGACAGATCGTTATAGAAAGAAAAAGAATTTCA
TACTTTACCCAACTGGCAAGAGTCGTATGGAGCCAATTGGTATCATCATCTTTGCATCAT
TAATGGCAACTGTGTCTTTGAATCTTTTATATGAAGGTGTATCAAAATTAATTTCACGTC
CAGAAGACCCAGAAATAACACTCTCAACAAAGATTTTAATGTACTCTTTGGTTGGTCTTG
CAATTTTAATCAAAGTAGCAATGTTTTTATATTGTCGTAGATTAACTCATTCATCATCTT
CAATGATTTTAGCAACCGATCATAGAAATGATATCGTGGTTAATTCATTTGGTGTTGGTA
TGGCTATTTTAGGTCAAAATTGGGTTTGGTGGTTAGATCCAAGTGGTGCAATCGTTGTTG
CTTTAATCATTTTACGTTCTTGGACTTCTGAAGCCTATGAACAAATTCAATTATTAGTTG
GTAAATCAGCATCACCAGAATTCCTTCAAAAATTAACTTTTATAGCTTTAACTCATCATC
CTGAAGTACTTAAAGTTGATACTTGTAGAGCATTCCATGTTGGTAATAATTTATATGTTG
AAGTTGATATAGTCTTACCACCATCAATGCCATTGGTTCAAACTCATGATATTGGTGAAT
CACTT
Length of 3' end seq. 655
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -