NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFC769
Library CF
(Link to library)
Clone ID CFC769
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16381-1
Original site URL
Representative seq. ID CFC769F
(Link to Original site)
Representative DNA sequence 
>CFC769 (CFC769Q) /CSM/CF/CFC7-C/CFC769Q.Seq.d/
ACTGTTGGCCTACTGGTTAAATATCAATACAATTAAAAAAAGTTAAAATTAAATTTGTAA
AATCAATTTGTAACAAAAACTAGTAATTTAAAAAAAAAAAAACCAAAAAAAAAAXXXXXX
XXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence 
cwptg*ISIQLKKVKIKFVKSICNKN**fkkkktkkk---
Translated Amino Acid sequence (All Frames) 
Frame A:
tvgllvkyqyn*kklklnl*nqfvtktsnlkkkkpkk---


Frame B:
llaywlnintikks*n*ickinl*qklvi*kkknqkk---


Frame C:
cwptg*ISIQLKKVKIKFVKSICNKN**fkkkktkkk---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFC769 (CFC769Q) /CSM/CF/CFC7-C/CFC769Q.Seq.d/                         66   1e-10
VFM850 (VFM850Q) /CSM/VF/VFM8-C/VFM850Q.Seq.d/                         46   1e-04
VFL482 (VFL482Q) /CSM/VF/VFL4-D/VFL482Q.Seq.d/                         46   1e-04
CHC229 (CHC229Q) /CSM/CH/CHC2-B/CHC229Q.Seq.d/                         46   1e-04
CHA412 (CHA412Q) /CSM/CH/CHA4-A/CHA412Q.Seq.d/                         46   1e-04
CHK706 (CHK706Q) /CSM/CH/CHK7-A/CHK706Q.Seq.d/                         44   4e-04
VHL442 (VHL442Q) /CSM/VH/VHL4-B/VHL442Q.Seq.d/                         42   0.002
VFN411 (VFN411Q) /CSM/VF/VFN4-A/VFN411Q.Seq.d/                         42   0.002
VFH735 (VFH735Q) /CSM/VF/VFH7-B/VFH735Q.Seq.d/                         42   0.002
VFC470 (VFC470Q) /CSM/VF/VFC4-C/VFC470Q.Seq.d/                         42   0.002
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BX523507|BX523507.1 RZPD Mus musculus cDNA clone IMAGp998M035891 = IMAGE:2372906 5' EST.    44   0.42   1
BD186889|BD186889.1 Nucleic acids isolated from neuroblastoma.     44   0.42   1
BD100206|BD100206.1 Novel genes cloned in humanneuroblastoma and fragments thereof.    44   0.42   1
BD020268|BD020268.1 Novel gene and novel gene fragment cloned in human neuroblastoma.    44   0.42   1
BD100158|BD100158.1 Novel genes cloned in humanneuroblastoma and fragments thereof.    42   1.7    1
BD020220|BD020220.1 Novel gene and novel gene fragment cloned in human neuroblastoma.    42   1.7    1
BD099527|BD099527.1 Novel genes cloned in humanneuroblastoma and fragments thereof.    42   1.7    1
BD019589|BD019589.1 Novel gene and novel gene fragment cloned in human neuroblastoma.    42   1.7    1
BD101366|BD101366.1 Novel genes cloned in humanneuroblastoma and fragments thereof.    40   6.6    1
BD021428|BD021428.1 Novel gene and novel gene fragment cloned in human neuroblastoma.    40   6.6    1
dna update 2004. 5.29
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 68,184,016
protein update 2009. 5.12
PSORT -
5' end seq. ID CFC769F
5' end seq. 
>CFC769F.Seq
ACTGTTGGCCTACTGGTTAAATATCAATACAATTAAAAAAAGTTAAAATTAAATTTGTAA
AATCAATTTGTAACAAAAACTAGTAATTTAAAAAAAAAAAAACCAAAAAAAAAA------
----
Length of 5' end seq. 114
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -