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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFC762
Library CF
(Link to library)
Clone ID CFC762
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U15409-1
Original site URL
Representative seq. ID CFC762P
(Link to Original site)
Representative DNA sequence 
>CFC762 (CFC762Q) /CSM/CF/CFC7-C/CFC762Q.Seq.d/
AAATATTAAACAATTATTCAATTGGAAATTTAAAATCATTTGTGATGAATGTAAAGAAAA
TACTGAATCATCTGGTTTTATCAAGTTAACTTTGGATTTAACAAATATTAATGAAACTAA
TAGATCAATCAAATCATTATTAATGTCAACTTTATTATATTCAATTAAAATTAGAAATTG
TAATCATAATAAATCAGATATTAAATTAGTAGAATCACCAGAATATATATTTATTGAAGT
TGAGAGATTTAAAAAAGGTCTTCCGTTCAATTCTAGTATTATAAACTTTGAAAAGAATAT
CAGTATATCAGAGTTATTGGGTAATTTTTCAAAAGATATTAATGGATTATATAATATTCA
ATCAATTCTTTCTTATGGTTCAAGAAATGATGAATTTGATTTTATTACAAGTAATGAAGG
TCAATACTATCATCTTACTTCTAGTAGTTGCGTTAAAACATTGAATGAGTACAGTTTTAA
CGCAATAATAGAGTCACTCAACAACAACTGTAACTTTATCATTTTAAAGAAAGGTGGCXX
XXXXXXXXCANCAACAAGAGATACATCAACAACCAGAGAAACCTCAACAACCAGAGAAAC
CACAAGAACTACAATCAACTGAAACACCAGGACAAGAAGTATCAGTTGATTATAAAATCC
TTTATGACAGAAAAGCTTTCAAAGAATTTTTATACGGTGGATTCGAAAAATTCACTGAAG
ATTTGAAACTGCAAATCCTTGATGCCGGTATCAATTGTTTTTCAGTTTTATTAAATTTAA
AGAGTGAAGACTGGTCAAAGTTTTCATTCTTACAATTACCAAAGAGAAATCAATTGGTAA
ATTCTTATAAGAAAATTCATAATGAAGCCATCAAAAAAGAGTATCCTTTCGAATCTCCTT
TTGATATAGATGACCAAAAAGCCTACGAACAATTCCTTAAAGATATCGTTAATGATGAAA
AAACTATAATGGATTTGGTTGAAGCTGGTTTTGACTCATTTACATCTTTAATTCCATCTG
ATGATGGCGGTTGGGAAGAAGTGTCTTTAAATTTACAAGAGATCCTTAAACCTGCGACAT
GTTTCAACTTAATCAATCAATTAAAATTGGTGGAAAAGCATAANAAAAATAAAAAAATAA
AAAAATAAAAAAAATAAATA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
NIKQLFNWKFKIICDECKENTESSGFIKLTLDLTNINETNRSIKSLLMSTLLYSIKIRNC
NHNKSDIKLVESPEYIFIEVERFKKGLPFNSSIINFEKNISISELLGNFSKDINGLYNIQ
SILSYGSRNDEFDFITSNEGQYYHLTSSSCVKTLNEYSFNAIIESLNNNCNFIILKKGG-
--

---XQQEIHQQPEKPQQPEKPQELQSTETPGQEVSVDYKILYDRKAFKEFLYGGFEKFTE
DLKLQILDAGINCFSVLLNLKSEDWSKFSFLQLPKRNQLVNSYKKIHNEAIKKEYPFESP
FDIDDQKAYEQFLKDIVNDEKTIMDLVEAGFDSFTSLIPSDDGGWEEVSLNLQEILKPAT
CFNLINQLKLVEKHXKNKKIKK*kk*i
Translated Amino Acid sequence (All Frames) 
Frame A:
ky*tiiqlei*nhl**m*rky*iiwfyqvnfgfnky**n**inqiiinvnfiifn*n*kl
*s**iry*isritriyiy*s*ei*krssvqf*yykl*keyqyirvig*ffkry*wii*ys
insflwfkk**i*fyyk**rsilssyf**lr*nie*vqf*rnnrvtqqql*lyhfkerw-
--

---XQQEIHQQPEKPQQPEKPQELQSTETPGQEVSVDYKILYDRKAFKEFLYGGFEKFTE
DLKLQILDAGINCFSVLLNLKSEDWSKFSFLQLPKRNQLVNSYKKIHNEAIKKEYPFESP
FDIDDQKAYEQFLKDIVNDEKTIMDLVEAGFDSFTSLIPSDDGGWEEVSLNLQEILKPAT
CFNLINQLKLVEKHXKNKKIKK*kk*i

Frame B:
NIKQLFNWKFKIICDECKENTESSGFIKLTLDLTNINETNRSIKSLLMSTLLYSIKIRNC
NHNKSDIKLVESPEYIFIEVERFKKGLPFNSSIINFEKNISISELLGNFSKDINGLYNIQ
SILSYGSRNDEFDFITSNEGQYYHLTSSSCVKTLNEYSFNAIIESLNNNCNFIILKKGG-
--

---xnkryinnqrnlnnqrnhknynqlkhqdkkyqliiksfmteklsknfytvdsknslk
i*nckslmpvsivfqfy*i*rvktgqsfhsynyqreinw*ilirkfimkpskksilsnll
li*mtkkptnnslkislmmkkl*wiwlklvlthlhl*fhlmmavgkkcl*iykrslnlrh
vst*sin*nwwksixkikk*knkknk

Frame C:
ilnnysignlksfvmnvkkilnhlvlss*lwi*qilmklidqsnhy*cqlyyiqlkleiv
iiinqiln**nhqniyllklrdlkkvfrsilvl*tlkrisvyqsywvifqkilmdyiifn
qfflmvqemmnlillqvmkvntiilllvvalkh*mstvltq**shstttvtlsf*rkv--
-

---xtrdtsttretsttrettrttin*ntrtrsis*l*npl*qksfqrifirwirkih*r
fetanp*cryqlffsfikfke*rlvkvfiltitkeksigkfl*ens**shqkrvsfrisf
*yr*pkslrtip*ryr***knyngfg*swf*liyifnsi**wrlgrsvfkftrdp*tcdm
fqlnqsikiggka*xk*knkkikkin
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFC762 (CFC762Q) /CSM/CF/CFC7-C/CFC762Q.Seq.d/                       2157   0.0
VSC489 (VSC489Q) /CSM/VS/VSC4-D/VSC489Q.Seq.d/                        666   0.0
SLH220 (SLH220Q) /CSM/SL/SLH2-A/SLH220Q.Seq.d/                        541   e-153
VFO288 (VFO288Q) /CSM/VF/VFO2-D/VFO288Q.Seq.d/                         42   0.019
VSG451 (VSG451Q) /CSM/VS/VSG4-C/VSG451Q.Seq.d/                         40   0.074
VSE819 (VSE819Q) /CSM/VS/VSE8-A/VSE819Q.Seq.d/                         40   0.074
SSH136 (SSH136Q) /CSM/SS/SSH1-B/SSH136Q.Seq.d/                         40   0.074
SSF178 (SSF178Q) /CSM/SS/SSF1-D/SSF178Q.Seq.d/                         40   0.074
VHH728 (VHH728Q) /CSM/VH/VHH7-B/VHH728Q.Seq.d/                         38   0.29
VHC772 (VHC772Q) /CSM/VH/VHC7-C/VHC772Q.Seq.d/                         38   0.29
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    68   8e-41  18
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    34   1e-11  25
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    40   1e-10  23
AF340153|AF340153.1 Dictyostelium discoideum calcium-dependent cell adhesion molecule-1 (cadA) gene, complete cds.    48   4e-08  3
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 2/4.    32   1e-07  24
AE014017|AE014017.1 Buchnera aphidicola str. Bp (Baizongia pistaciae), section 2 of 2 of the complete genome.    38   2e-07  15
AB063521|AB063521.2 Wigglesworthia brevipalpis DNA, complete genome, section 1/2.    32   2e-06  21
AE017338|AE017338.1 Mycoplasma mobile 163K section 2 of 3 of the complete genome.    34   2e-06  17
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           38   1e-05  27
AL929352|AL929352.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 2/4.    36   5e-05  18
dna update 2004. 5.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE009951_149(AE009951|pid:none) Fusobacterium nucleatum subsp. n...    38   0.57
AL844509_417(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    38   0.75
CP001205_635(CP001205|pid:none) Borrelia burgdorferi ZS7, comple...    37   1.3
CU207366_276(CU207366|pid:none) Gramella forsetii KT0803 complet...    37   1.3
(Q44737) RecName: Full=Chemotaxis protein cheA;          EC=2.7....    37   1.3
DQ211612_1(DQ211612|pid:none) Crimean-Congo hemorrhagic fever vi...    36   2.2
CP000568_2812(CP000568|pid:none) Clostridium thermocellum ATCC 2...    36   2.8
CP000568_2783(CP000568|pid:none) Clostridium thermocellum ATCC 2...    36   2.8
CP001357_950(CP001357|pid:none) Brachyspira hyodysenteriae WA1, ...    35   3.7
AB288525_1(AB288525|pid:none) Ainsliaea grossedentata ndhF gene ...    35   3.7
protein update 2009. 5.12
PSORT 

 psg: 0.50  gvh: 0.50  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 36.0 %: cytoplasmic
	 20.0 %: mitochondrial

>> prediction for CFC762 is nuc
5' end seq. ID CFC762F
5' end seq. 
>CFC762F.Seq
AAATATTAAACAATTATTCAATTGGAAATTTAAAATCATTTGTGATGAATGTAAAGAAAA
TACTGAATCATCTGGTTTTATCAAGTTAACTTTGGATTTAACAAATATTAATGAAACTAA
TAGATCAATCAAATCATTATTAATGTCAACTTTATTATATTCAATTAAAATTAGAAATTG
TAATCATAATAAATCAGATATTAAATTAGTAGAATCACCAGAATATATATTTATTGAAGT
TGAGAGATTTAAAAAAGGTCTTCCGTTCAATTCTAGTATTATAAACTTTGAAAAGAATAT
CAGTATATCAGAGTTATTGGGTAATTTTTCAAAAGATATTAATGGATTATATAATATTCA
ATCAATTCTTTCTTATGGTTCAAGAAATGATGAATTTGATTTTATTACAAGTAATGAAGG
TCAATACTATCATCTTACTTCTAGTAGTTGCGTTAAAACATTGAATGAGTACAGTTTTAA
CGCAATAATAGAGTCACTCAACAACAACTGTAACTTTATCATTTTAAAGAAAGGTGGC--
--------
Length of 5' end seq. 538
3' end seq. ID CFC762Z
3' end seq. 
>CFC762Z.Seq
----------CANCAACAAGAGATACATCAACAACCAGAGAAACCTCAACAACCAGAGAA
ACCACAAGAACTACAATCAACTGAAACACCAGGACAAGAAGTATCAGTTGATTATAAAAT
CCTTTATGACAGAAAAGCTTTCAAAGAATTTTTATACGGTGGATTCGAAAAATTCACTGA
AGATTTGAAACTGCAAATCCTTGATGCCGGTATCAATTGTTTTTCAGTTTTATTAAATTT
AAAGAGTGAAGACTGGTCAAAGTTTTCATTCTTACAATTACCAAAGAGAAATCAATTGGT
AAATTCTTATAAGAAAATTCATAATGAAGCCATCAAAAAAGAGTATCCTTTCGAATCTCC
TTTTGATATAGATGACCAAAAAGCCTACGAACAATTCCTTAAAGATATCGTTAATGATGA
AAAAACTATAATGGATTTGGTTGAAGCTGGTTTTGACTCATTTACATCTTTAATTCCATC
TGATGATGGCGGTTGGGAAGAAGTGTCTTTAAATTTACAAGAGATCCTTAAACCTGCGAC
ATGTTTCAACTTAATCAATCAATTAAAATTGGTGGAAAAGCATAANAAAAATAAAAAAAT
AAAAAAATAAAAAAAATAAATA
Length of 3' end seq. 612
Connected seq. ID CFC762P
Connected seq. 
>CFC762P.Seq
AAATATTAAACAATTATTCAATTGGAAATTTAAAATCATTTGTGATGAATGTAAAGAAAA
TACTGAATCATCTGGTTTTATCAAGTTAACTTTGGATTTAACAAATATTAATGAAACTAA
TAGATCAATCAAATCATTATTAATGTCAACTTTATTATATTCAATTAAAATTAGAAATTG
TAATCATAATAAATCAGATATTAAATTAGTAGAATCACCAGAATATATATTTATTGAAGT
TGAGAGATTTAAAAAAGGTCTTCCGTTCAATTCTAGTATTATAAACTTTGAAAAGAATAT
CAGTATATCAGAGTTATTGGGTAATTTTTCAAAAGATATTAATGGATTATATAATATTCA
ATCAATTCTTTCTTATGGTTCAAGAAATGATGAATTTGATTTTATTACAAGTAATGAAGG
TCAATACTATCATCTTACTTCTAGTAGTTGCGTTAAAACATTGAATGAGTACAGTTTTAA
CGCAATAATAGAGTCACTCAACAACAACTGTAACTTTATCATTTTAAAGAAAGGTGGC--
--------CANCAACAAGAGATACATCAACAACCAGAGAAACCTCAACAACCAGAGAAAC
CACAAGAACTACAATCAACTGAAACACCAGGACAAGAAGTATCAGTTGATTATAAAATCC
TTTATGACAGAAAAGCTTTCAAAGAATTTTTATACGGTGGATTCGAAAAATTCACTGAAG
ATTTGAAACTGCAAATCCTTGATGCCGGTATCAATTGTTTTTCAGTTTTATTAAATTTAA
AGAGTGAAGACTGGTCAAAGTTTTCATTCTTACAATTACCAAAGAGAAATCAATTGGTAA
ATTCTTATAAGAAAATTCATAATGAAGCCATCAAAAAAGAGTATCCTTTCGAATCTCCTT
TTGATATAGATGACCAAAAAGCCTACGAACAATTCCTTAAAGATATCGTTAATGATGAAA
AAACTATAATGGATTTGGTTGAAGCTGGTTTTGACTCATTTACATCTTTAATTCCATCTG
ATGATGGCGGTTGGGAAGAAGTGTCTTTAAATTTACAAGAGATCCTTAAACCTGCGACAT
GTTTCAACTTAATCAATCAATTAAAATTGGTGGAAAAGCATAANAAAAATAAAAAAATAA
AAAAATAAAAAAAATAAATA
Length of connected seq. 1150
Full length Seq ID -
Full length Seq. -
Length of full length seq. -