CFC757 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

CFC757
Library	CF (Link to library)
Clone ID	CFC757 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U12602-1\|Contig-U16365-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/CF/CFC7-C/CFC757Q.Seq.d/
Representative seq. ID	CFC757P (Link to Original site)
Representative DNA sequence	>CFC757 (CFC757Q) /CSM/CF/CFC7-C/CFC757Q.Seq.d/ ATGCAAATAGAAAGATCATCTCAAAGAAACACAAATACAGAATCTCACAAACACACACAG AATAACGCAACTTTCCAGTGTTTTTAATAAATAAATAAATAATAAATATATATAAGTCAA AGAAAATGGACTCTAAATGGTTTTTTATTGTATTAATAAGTTTTTTATTGGTTCTTCCAA GTATAGTCACACCTTATAGAAAGAGTGTTGAAATAACAAATGAAGAACCACAAAGAGATA TATATCAATTAGAAAAAACTAATAAGATGGCAGAAGTAGGAGATTTGGGTGTTGCTTCAT TTTTAAATATTTTAGATACCAGCAGTTCTAGTTCAAGCTCAAGCAGTTCTAGTTCAAGCA GTTCTAGTTCCAGCTCAAGCAGTTCTAGTTCAAGCAGCTCTTCATCAAGCAGTTCAAGTT CTTCTTCAAGCAGTTCAAGCTCTTCATCAAGCAGCTCAAGCTCTTCAAGCAGTTCATCAT CATCATCATCATCATCATCATCATCATCATCATCAAGCAGCTCAAGCTCATCATCATCAA GCAGCTCAAGCTCATCATCATCAAGCAGCTCAAGCTCAAGCTCATCATCAAGTAGCTCAA GCTCAAGCTCATCATCAAGCAGCTCAAGCTCATCAAGCAGCTCATCATCATCATCATCAA GCAGCTCAAGTTCATCATCTTCAAGCTCTTCATCAAGCTCAAGTAGCTCAAGCTCTTCAT CAAGCTCAAGCAGCTCAAGCTCTTCATCAXXXXXXXXXXTGATCATCATCATCATCATCA TCATCATCATCATCATCATNAAGNNGAAGNTGATCATCATCATNANGANGATGATGATCA TCATCATNANGANGANGNTGATGATGATNATNATNAAGANGANGANGAAGATNATNATCA NNAAGNNGANGNTGATNANGNAGNTNATNATCATCATCATCATNAAGANGANGNTNATCA TCATCATGATNNTCATCATNATNAAGAAGNNGANGTTGTTCATCANNANGANGNAGNNGN NGNTGTTNNTNANGNNGNAGNAGTNGATGNNGTNGNNGNNGTTGNTNANGANGANGNTNC TNNNGNNNNNGNAGTTGNTNANGNTNCTCANGNNGNNGCNGNTGATNANGCAGNNGNTNA NNNTNCTNNNGNNGNAGCAGNNGNTNANGNTNCTNNNGNNGNNGCTGNTNNTNANGANGN AGNNGNNGNNGNNGCTNCTCNTCANGNNNNNGCTNCTNNTCANGNNGCNGNTCATCATCA TCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCA TCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCA TCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCAAGCTCAAGCAGC TCATCAAGTTCAAGCTCAAGCAGTTCTAGCTCAAGCAGTTCTAGTTCAAGTGGAGAAAAC TGAATTTAAAATGATATAATATAATAATAATAATAATAAAACTCGACCACCAAATTAAAA ATATTAANCCAGGTGTGCAAATGC
sequence update	2001. 6. 1
Translated Amino Acid sequence	anrkiiskkhkyrisqthternfpvflinkIINIYKSKKMDSKWFFIVLISFLLVLPS IVTPYRKSVEITNEEPQRDIYQLEKTNKMAEVGDLGVASFLNILDTSSSSSSSSSSSSSS SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS SSSSSSSSS--- ---DHHHHHHHHHHHHXXEXDHHHXXDDDHHHXXXXDDDXXXXXXEDXXXXXXXDXXXXX HHHHXXXXXHHHDXHHXXEXXVVHXXXXXXXVXXXXXVDXVXXVXXXXXXXXXXVXXXXX XXAXDXAXXXXXXXXAXXXXXXXXAXXXXXXXXXAXXXXXAXXXXAXHHHHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHQAQAAHQVQAQAVLA QAVLVQVEKTEFKMIynnnnnktrppnky*xrcan
Translated Amino Acid sequence (All Frames)	Frame A: mqierssqrntnteshkhtqnnatfqcfinkiyisqrkwtlngflly*vfywffq vshliervlkqmknhkeiyinkklirwqkeiwvllhfifipavlvqaqavlvqa vlvpaqavlvqaalhqavqvllqavqalhqaaqalqavhhhhhhhhhhhhhqaaqahhhq aaqahhhqaaqaqahhqvaqaqahhqaaqahqaahhhhhqaaqvhhlqalhqaqvaqalh qaqaaqalh--- ---ssssssssssssxxxxsssxxxsssxxxx*xxxrxxxrxxsxxxxxxxxx ssssxrxxxsssxssxxrxxxcssxxxxxxcxxxxxsxxxxxxxxxxxxxxxxsxxxxs xxxxxxxxxxxxxxsxxxxxxxxxxxxxxxxxxxxssxxxxxsxxxsssssssssssss ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss sssssssgenindii*****nsttklkilxqvckc Frame B: ckkdhlketqiqnltnthritqlssvfnkinnkyivkenglmvfycinkffigssk yshtlkecnnkrttkryisirkn*dgrsrrfgccfifkyfryqqffklkqffkq ffqlkqffkqlfikqfkfffkqfklfikqlklfkqfiiiiiiiiiiiiikqlkliiik qlkliiikqlklkliiklklkliikqlklikqliiiiikqlkfiifklfiklklklfi klkqlklfi--- ---DHHHHHHHHHHHHXXEXDHHHXXDDDHHHXXXXDDDXXXXXXEDXXXXXXXDXXXXX HHHHXXXXXHHHDXHHXXEXXVVHXXXXXXXVXXXXXVDXVXXVXXXXXXXXXXVXXXXX XXAXDXAXXXXXXXXAXXXXXXXXAXXXXXXXXXAXXXXXAXXXXAXHHHHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHQAQAAHQVQAQAVLA QAVLVQVEKTEFKMIynnnnnktrppnkyxrcan Frame C: anrkiiskkhkyrisqthternfpvflinkIINIYKSKKMDSKWFFIVLISFLLVLPS IVTPYRKSVEITNEEPQRDIYQLEKTNKMAEVGDLGVASFLNILDTSSSSSSSSSSSSSS SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS SSSSSSSSS--- ---iiiiiiiiiiiixkxkxiiixxxmmiiixxxxxmmxxxkxxxkxxixkxxxxxxxxi iiixkxxxiiimxxixxkkxxlfixxxxxxxxxxxxxxmxxxxlxxxxxlxxxxlxxxlx xxxxxxqxxxxlxxxqxxxxlxxxlxxxxxxxxxllxxxxllxxxxxiiiiiiiiiiiii iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiklkqlikfklkqfl kqffkwrklnlk*yniiiiiikldhqiknixpgvqm
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VFB296 (VFB296Q) /CSM/VF/VFB2-D/VFB296Q.Seq.d/ 710 0.0 SFJ767 (SFJ767Q) /CSM/SF/SFJ7-C/SFJ767Q.Seq.d/ 710 0.0 CFI751 (CFI751Q) /CSM/CF/CFI7-C/CFI751Q.Seq.d/ 710 0.0 CFC757 (CFC757Q) /CSM/CF/CFC7-C/CFC757Q.Seq.d/ 710 0.0 SFJ894 (SFJ894Q) /CSM/SF/SFJ8-D/SFJ894Q.Seq.d/ 696 0.0 CFG306 (CFG306Q) /CSM/CF/CFG3-A/CFG306Q.Seq.d/ 692 0.0 CHD746 (CHD746Q) /CSM/CH/CHD7-B/CHD746Q.Seq.d/ 668 0.0 VFF209 (VFF209Q) /CSM/VF/VFF2-A/VFF209Q.Seq.d/ 555 e-157 CHB638 (CHB638Q) /CSM/CH/CHB6-B/CHB638Q.Seq.d/ 549 e-155 VFJ123 (VFJ123Q) /CSM/VF/VFJ1-A/VFJ123Q.Seq.d/ 533 e-150
own update	2002.11.17
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AC117072\|AC117072.3 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence. 430 0.0 14 BE643088\|BE643088.1 Cri2_7_N07_SP6 Ceratopteris Spore Library Ceratopteris richardii cDNA clone Cri2_7_N07 5', mRNA sequence. 48 7e-25 8 AF469923\|AF469923.1 Plasmodium falciparum isolate H-519 serine repeat antigen gene, partial cds. 32 4e-04 5 AF469916\|AF469916.1 Plasmodium falciparum isolate L-201 serine repeat antigen gene, partial cds. 32 4e-04 5 AF469919\|AF469919.1 Plasmodium falciparum isolate M-481 serine repeat antigen gene, partial cds. 32 4e-04 5 AF469918\|AF469918.1 Plasmodium falciparum isolate M-170 serine repeat antigen gene, partial cds. 32 4e-04 5 AF469920\|AF469920.1 Plasmodium falciparum isolate L-204 serine repeat antigen gene, partial cds. 32 5e-04 5 AF469922\|AF469922.1 Plasmodium falciparum isolate H-20 serine repeat antigen gene, partial cds. 32 5e-04 5 AF469921\|AF469921.1 Plasmodium falciparum isolate L-319 serine repeat antigen gene, partial cds. 32 5e-04 5 AF469917\|AF469917.1 Plasmodium falciparum isolate K-2 serine repeat antigen gene, partial cds. 32 5e-04 5
dna update	2004. 5.29
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (Q75JC9) RecName: Full=Uncharacterized protein DDB_G0271670; Fla... 96 3e-18 (Q8MP30) RecName: Full=Uncharacterized histidine-rich protein DD... 35 9.6
protein update	2009. 5.12
PSORT	psg: 0.85 gvh: 0.66 alm: 0.44 top: 0.20 tms: 0.00 mit: 0.28 mip: 0.07 nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 40.0 %: extracellular, including cell wall 24.0 %: cytoplasmic 12.0 %: vacuolar 12.0 %: nuclear 4.0 %: mitochondrial 4.0 %: vesicles of secretory system 4.0 %: endoplasmic reticulum >> prediction for CFC757 is exc
5' end seq. ID	CFC757F
5' end seq.	>CFC757F.Seq ATGCAAATAGAAAGATCATCTCAAAGAAACACAAATACAGAATCTCACAAACACACACAG AATAACGCAACTTTCCAGTGTTTTTAATAAATAAATAAATAATAAATATATATAAGTCAA AGAAAATGGACTCTAAATGGTTTTTTATTGTATTAATAAGTTTTTTATTGGTTCTTCCAA GTATAGTCACACCTTATAGAAAGAGTGTTGAAATAACAAATGAAGAACCACAAAGAGATA TATATCAATTAGAAAAAACTAATAAGATGGCAGAAGTAGGAGATTTGGGTGTTGCTTCAT TTTTAAATATTTTAGATACCAGCAGTTCTAGTTCAAGCTCAAGCAGTTCTAGTTCAAGCA GTTCTAGTTCCAGCTCAAGCAGTTCTAGTTCAAGCAGCTCTTCATCAAGCAGTTCAAGTT CTTCTTCAAGCAGTTCAAGCTCTTCATCAAGCAGCTCAAGCTCTTCAAGCAGTTCATCAT CATCATCATCATCATCATCATCATCATCATCATCAAGCAGCTCAAGCTCATCATCATCAA GCAGCTCAAGCTCATCATCATCAAGCAGCTCAAGCTCAAGCTCATCATCAAGTAGCTCAA GCTCAAGCTCATCATCAAGCAGCTCAAGCTCATCAAGCAGCTCATCATCATCATCATCAA GCAGCTCAAGTTCATCATCTTCAAGCTCTTCATCAAGCTCAAGTAGCTCAAGCTCTTCAT CAAGCTCAAGCAGCTCAAGCTCTTCATCA----------
Length of 5' end seq.	749
3' end seq. ID	CFC757Z
3' end seq.	>CFC757Z.Seq ----------TGATCATCATCATCATCATCATCATCATCATCATCATCATNAAGNNGAAG NTGATCATCATCATNANGANGATGATGATCATCATCATNANGANGANGNTGATGATGATN ATNATNAAGANGANGANGAAGATNATNATCANNAAGNNGANGNTGATNANGNAGNTNATN ATCATCATCATCATNAAGANGANGNTNATCATCATCATGATNNTCATCATNATNAAGAAG NNGANGTTGTTCATCANNANGANGNAGNNGNNGNTGTTNNTNANGNNGNAGNAGTNGATG NNGTNGNNGNNGTTGNTNANGANGANGNTNCTNNNGNNNNNGNAGTTGNTNANGNTNCTC ANGNNGNNGCNGNTGATNANGCAGNNGNTNANNNTNCTNNNGNNGNAGCAGNNGNTNANG NTNCTNNNGNNGNNGCTGNTNNTNANGANGNAGNNGNNGNNGNNGCTNCTCNTCANGNNN NNGCTNCTNNTCANGNNGCNGNTCATCATCATCATCATCATCATCATCATCATCATCATC ATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATC ATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATC ATCATCATCATCATCATCAAGCTCAAGCAGCTCATCAAGTTCAAGCTCAAGCAGTTCTAG CTCAAGCAGTTCTAGTTCAAGTGGAGAAAACTGAATTTAAAATGATATAATATAATAATA ATAATAATAAAACTCGACCACCAAATTAAAAATATTAANCCAGGTGTGCAAATGC
Length of 3' end seq.	825
Connected seq. ID	CFC757P
Connected seq.	>CFC757P.Seq ATGCAAATAGAAAGATCATCTCAAAGAAACACAAATACAGAATCTCACAAACACACACAG AATAACGCAACTTTCCAGTGTTTTTAATAAATAAATAAATAATAAATATATATAAGTCAA AGAAAATGGACTCTAAATGGTTTTTTATTGTATTAATAAGTTTTTTATTGGTTCTTCCAA GTATAGTCACACCTTATAGAAAGAGTGTTGAAATAACAAATGAAGAACCACAAAGAGATA TATATCAATTAGAAAAAACTAATAAGATGGCAGAAGTAGGAGATTTGGGTGTTGCTTCAT TTTTAAATATTTTAGATACCAGCAGTTCTAGTTCAAGCTCAAGCAGTTCTAGTTCAAGCA GTTCTAGTTCCAGCTCAAGCAGTTCTAGTTCAAGCAGCTCTTCATCAAGCAGTTCAAGTT CTTCTTCAAGCAGTTCAAGCTCTTCATCAAGCAGCTCAAGCTCTTCAAGCAGTTCATCAT CATCATCATCATCATCATCATCATCATCATCATCAAGCAGCTCAAGCTCATCATCATCAA GCAGCTCAAGCTCATCATCATCAAGCAGCTCAAGCTCAAGCTCATCATCAAGTAGCTCAA GCTCAAGCTCATCATCAAGCAGCTCAAGCTCATCAAGCAGCTCATCATCATCATCATCAA GCAGCTCAAGTTCATCATCTTCAAGCTCTTCATCAAGCTCAAGTAGCTCAAGCTCTTCAT CAAGCTCAAGCAGCTCAAGCTCTTCATCA----------TGATCATCATCATCATCATCA TCATCATCATCATCATCATNAAGNNGAAGNTGATCATCATCATNANGANGATGATGATCA TCATCATNANGANGANGNTGATGATGATNATNATNAAGANGANGANGAAGATNATNATCA NNAAGNNGANGNTGATNANGNAGNTNATNATCATCATCATCATNAAGANGANGNTNATCA TCATCATGATNNTCATCATNATNAAGAAGNNGANGTTGTTCATCANNANGANGNAGNNGN NGNTGTTNNTNANGNNGNAGNAGTNGATGNNGTNGNNGNNGTTGNTNANGANGANGNTNC TNNNGNNNNNGNAGTTGNTNANGNTNCTCANGNNGNNGCNGNTGATNANGCAGNNGNTNA NNNTNCTNNNGNNGNAGCAGNNGNTNANGNTNCTNNNGNNGNNGCTGNTNNTNANGANGN AGNNGNNGNNGNNGCTNCTCNTCANGNNNNNGCTNCTNNTCANGNNGCNGNTCATCATCA TCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCA TCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCA TCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCAAGCTCAAGCAGC TCATCAAGTTCAAGCTCAAGCAGTTCTAGCTCAAGCAGTTCTAGTTCAAGTGGAGAAAAC TGAATTTAAAATGATATAATATAATAATAATAATAATAAAACTCGACCACCAAATTAAAA ATATTAANCCAGGTGTGCAAATGC
Length of connected seq.	1574
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas