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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFC754
Library CF
(Link to library)
Clone ID CFC754
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15883-1
Original site URL
Representative seq. ID CFC754P
(Link to Original site)
Representative DNA sequence 
>CFC754 (CFC754Q) /CSM/CF/CFC7-C/CFC754Q.Seq.d/
ACTGTTGGCCTACTGGATATAAATTGGGGTCATTATATGATCATGACAACGAACAACAAT
AGTAATAATAATAATAACAATAATAACAATAATAATAACAATAATAACAACAATAATAAT
AATAATATTAACCAAAATCATCAACATCAACATCAACATCACCATCATCAACAACAGCAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAGCAGCAG
CAACAACAACAACAACAACAAAANTACGGNGAGAGTACGACATCTACTNCTATGATTCCA
CCCTCCATTACAACTTCATTAACACCATTAACACCAACATTATCATCTCAACCACAAAAT
ATACAACAACAACAACAACAGCANCATCATCACCAACAACAACATCATCATCATXXXXXX
XXXXGCTCAGCACCAATGTCACCATCTAAAAAGAGTAAAAACAGCAGAAGTAGCAGTAAG
AGTAAATATCAAAATTCAGAGGAGAGATGGCAATCTACAACCAGTAAAGACAATGGTAAA
CCTTCTAGTCCTGGTATAGTTAAGGGACCTTGGAAGGATGAAGAGGATGCAAAATTGGTA
GAGTTGGTTAATAAATGTGGACCAAAGGAATGGTCTTCAATAGCAGCTAAAATACCCGGT
AGAATCGGTAAACAATGCAGAGAGAGATGGTTCAATCATCTCTCACCAGAGGTTAGAAAA
ACAAATTGGACCCCTGAAGAGGATAAAATTATCATTGATGCTCACGCTTCGTTGGGTAAT
AAATGGACTGCAATCTCTAAAATGTTGGATGGTAGACCTGCAAATGCAATTAAAAATCAT
TGGAATTCTACCCTACTCAAAAAAATTGGTGGTGATTCAAAATCTTTAAACAAAGAGAAA
GATGATGACGACGATGACGATGAAGATGCAGAGGATGGTAGTTCTCCAGTTTTATCTCCA
ATATCTTTATATCAATCTTCCTCTTCAACAACAACAACTACTACAACTACTACAACAAAT
TCTTCTGAAAAATCAAATATTCCACCTTTTGCACTCTCTGGTAGTACAACAACCTCTACA
AATAATTTAAATAATAGTACAAATAGTACCAATAGTATTAATAATAATAATAACAATAAA
TAAATAAANAATAAATAAATAAAAAAAC
sequence update 2001. 6. 1
Translated Amino Acid sequence 
TVGLLDINWGHYMIMTTNNNSNNNNNNNNNNNNNNNNNNNNNINQNHQHQHQHHHHQQQQ
QQQQQQQQQQQQQQQQQQQQQQQQQQQXYGESTTSTXMIPPSITTSLTPLTPTLSSQPQN
IQQQQQQXHHHQQQHHHH---

---SAPMSPSKKSKNSRSSSKSKYQNSEERWQSTTSKDNGKPSSPGIVKGPWKDEEDAKL
VELVNKCGPKEWSSIAAKIPGRIGKQCRERWFNHLSPEVRKTNWTPEEDKIIIDAHASLG
NKWTAISKMLDGRPANAIKNHWNSTLLKKIGGDSKSLNKEKDDDDDDDEDAEDGSSPVLS
PISLYQSSSSTTTTTTTTTTNSSEKSNIPPFALSGSTTTSTNNLNNSTNSTNSINNNNNN
K*ixnk*ikk
Translated Amino Acid sequence (All Frames) 
Frame A:
TVGLLDINWGHYMIMTTNNNSNNNNNNNNNNNNNNNNNNNNNINQNHQHQHQHHHHQQQQ
QQQQQQQQQQQQQQQQQQQQQQQQQQQXYGESTTSTXMIPPSITTSLTPLTPTLSSQPQN
IQQQQQQXHHHQQQHHHH---

---aqhqchhlkrvktaevavrvnikiqrrdgnlqpvktmvnllvlv*lrdlgrmkrmqn
w*swlinvdqrnglq*qlkypvesvnnaerdgsiishqrlekqigplkriklslmltlrw
vinglqslkcwmvdlqmqlkiigilpyskklvviqnl*tkrkmmttmtmkmqrmvvlqfy
lqylyinlplqqqqllqllqqillknqifhllhslvvqqplqii*iivqivpivliiiit
ink*xink*kn

Frame B:
llaywi*igvii*s*qrttiviiiitiitiiitiittiiiiiltkiinininitiinnsn
nnnnnnnnnnnnnnnnnsssnnnnnnkxtxrvrhlll*fhpplqlh*hh*hqhyhlnhki
ynnnnnsxiitnnniii---

---lstnvti*ke*kqqk*q*e*iskfrgemaiynq*rqw*tf*swys*gtleg*rgcki
grvg**mwtkgmvfnss*ntr*nr*tmqremvqssltrg*knkldp*rg*nyh*csrfvg
**mdcnl*nvgw*tckcn*kslefyptqknww*fkifkqrer**rr*r*rcrgw*fssfi
snifisiflfnnnnyynyynkff*kikystfctlw*ynnlyk*fk**yk*yq*y*****q
*inkx*inkk

Frame C:
cwptgyklgslydhdneqq******q**q***q**qq****y*pksstststspssttat
tttttttttttttttttaaattttttkxrxeydiyxydstlhynfintintniiisttky
ttttttaxssptttsss---

---SAPMSPSKKSKNSRSSSKSKYQNSEERWQSTTSKDNGKPSSPGIVKGPWKDEEDAKL
VELVNKCGPKEWSSIAAKIPGRIGKQCRERWFNHLSPEVRKTNWTPEEDKIIIDAHASLG
NKWTAISKMLDGRPANAIKNHWNSTLLKKIGGDSKSLNKEKDDDDDDDEDAEDGSSPVLS
PISLYQSSSSTTTTTTTTTTNSSEKSNIPPFALSGSTTTSTNNLNNSTNSTNSINNNNNN
K*ixnk*ikk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFC754 (CFC754Q) /CSM/CF/CFC7-C/CFC754Q.Seq.d/                       1070   0.0
AFM846 (AFM846Q) /CSM/AF/AFM8-B/AFM846Q.Seq.d/                        930   0.0
CHJ781 (CHJ781Q) /CSM/CH/CHJ7-D/CHJ781Q.Seq.d/                        775   0.0
AFK258 (AFK258Q) /CSM/AF/AFK2-C/AFK258Q.Seq.d/                        656   0.0
CFB570 (CFB570Q) /CSM/CF/CFB5-C/CFB570Q.Seq.d/                        557   e-157
CHA436 (CHA436Q) /CSM/CH/CHA4-B/CHA436Q.Seq.d/                        280   5e-74
CHH309 (CHH309Q) /CSM/CH/CHH3-A/CHH309Q.Seq.d/                        272   1e-71
SLH891 (SLH891Q) /CSM/SL/SLH8-D/SLH891Q.Seq.d/                        210   4e-53
SFK744 (SFK744Q) /CSM/SF/SFK7-B/SFK744Q.Seq.d/                        174   2e-42
CHA836 (CHA836Q) /CSM/CH/CHA8-B/CHA836Q.Seq.d/                        167   5e-40
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC139946|AC139946.3 Rattus norvegicus clone CH230-88O20, WORKING DRAFT SEQUENCE, 43 unordered pieces.    50   1e-05  5
BJ803567|BJ803567.1 Caenorhabditis elegans cDNA clone:yk1474h04 : 5' end.    56   0.001  1
C43896|C43896.1 C.elegans cDNA clone yk336c10 : 5' end, single read.    56   0.001  1
BJ772464|BJ772464.1 Caenorhabditis elegans cDNA clone:yk1730e11 : 5' end.    56   0.001  1
CK702528|CK702528.1 USDA-FP_5790 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE55A11 5', mRNA sequence.    56   0.001  1
Z68752|Z68752.1 Caenorhabditis elegans cosmid T12G3.               56   0.001  1
AV191515|AV191515.1 Caenorhabditis elegans cDNA clone:yk594g6 : 5' end, single read.    56   0.001  1
D73591|D73591.1 C.elegans cDNA clone yk60g4 : 5' end, single read.    56   0.001  1
C45420|C45420.1 C.elegans cDNA clone yk393g12 : 5' end, single read.    56   0.001  1
C40413|C40413.1 C.elegans cDNA clone yk230e7 : 5' end, single read.    56   0.001  1
dna update 2004. 5.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54HP1) RecName: Full=Myb-like protein Q;                            322   2e-86
AJ719577_1(AJ719577|pid:none) Gallus gallus mRNA for hypothetica...   160   6e-38
BC096006_1(BC096006|pid:none) Xenopus tropicalis v-myb myeloblas...   160   1e-37
FB798675_1(FB798675|pid:none) Sequence 17948 from Patent WO20080...   159   1e-37
AJ606318_1(AJ606318|pid:none) Homo sapiens mRNA for v-myb myelob...   159   2e-37
M13138_2(M13138|pid:none) Mouse c-myb mRNA with Cas-BR-M viral g...   159   2e-37
TVHUMB(A26661;A41952;S11197;I59517;I80450;I58400;S08492)transfor...   159   2e-37
D26148_1(D26148|pid:none) Bos taurus mRNA for protooncogene c-my...   159   2e-37
S11198(S11198) transforming protein myb (clone Mbm-2) - human (f...   159   2e-37
L00056_1(L00056|pid:none) Chicken c-myb gene (analogue to v-myb ...   159   2e-37
protein update 2009. 5.12
PSORT 

 psg: 0.75  gvh: 0.14  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.14  mip: 0.25
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.38  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 88.0 %: nuclear
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: cytoplasmic

>> prediction for CFC754 is nuc
5' end seq. ID CFC754F
5' end seq. 
>CFC754F.Seq
ACTGTTGGCCTACTGGATATAAATTGGGGTCATTATATGATCATGACAACGAACAACAAT
AGTAATAATAATAATAACAATAATAACAATAATAATAACAATAATAACAACAATAATAAT
AATAATATTAACCAAAATCATCAACATCAACATCAACATCACCATCATCAACAACAGCAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAGCAGCAG
CAACAACAACAACAACAACAAAANTACGGNGAGAGTACGACATCTACTNCTATGATTCCA
CCCTCCATTACAACTTCATTAACACCATTAACACCAACATTATCATCTCAACCACAAAAT
ATACAACAACAACAACAACAGCANCATCATCACCAACAACAACATCATCATCAT------
----
Length of 5' end seq. 414
3' end seq. ID CFC754Z
3' end seq. 
>CFC754Z.Seq
----------GCTCAGCACCAATGTCACCATCTAAAAAGAGTAAAAACAGCAGAAGTAGC
AGTAAGAGTAAATATCAAAATTCAGAGGAGAGATGGCAATCTACAACCAGTAAAGACAAT
GGTAAACCTTCTAGTCCTGGTATAGTTAAGGGACCTTGGAAGGATGAAGAGGATGCAAAA
TTGGTAGAGTTGGTTAATAAATGTGGACCAAAGGAATGGTCTTCAATAGCAGCTAAAATA
CCCGGTAGAATCGGTAAACAATGCAGAGAGAGATGGTTCAATCATCTCTCACCAGAGGTT
AGAAAAACAAATTGGACCCCTGAAGAGGATAAAATTATCATTGATGCTCACGCTTCGTTG
GGTAATAAATGGACTGCAATCTCTAAAATGTTGGATGGTAGACCTGCAAATGCAATTAAA
AATCATTGGAATTCTACCCTACTCAAAAAAATTGGTGGTGATTCAAAATCTTTAAACAAA
GAGAAAGATGATGACGACGATGACGATGAAGATGCAGAGGATGGTAGTTCTCCAGTTTTA
TCTCCAATATCTTTATATCAATCTTCCTCTTCAACAACAACAACTACTACAACTACTACA
ACAAATTCTTCTGAAAAATCAAATATTCCACCTTTTGCACTCTCTGGTAGTACAACAACC
TCTACAAATAATTTAAATAATAGTACAAATAGTACCAATAGTATTAATAATAATAATAAC
AATAAATAAATAAANAATAAATAAATAAAAAAAC
Length of 3' end seq. 744
Connected seq. ID CFC754P
Connected seq. 
>CFC754P.Seq
ACTGTTGGCCTACTGGATATAAATTGGGGTCATTATATGATCATGACAACGAACAACAAT
AGTAATAATAATAATAACAATAATAACAATAATAATAACAATAATAACAACAATAATAAT
AATAATATTAACCAAAATCATCAACATCAACATCAACATCACCATCATCAACAACAGCAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAGCAGCAG
CAACAACAACAACAACAACAAAANTACGGNGAGAGTACGACATCTACTNCTATGATTCCA
CCCTCCATTACAACTTCATTAACACCATTAACACCAACATTATCATCTCAACCACAAAAT
ATACAACAACAACAACAACAGCANCATCATCACCAACAACAACATCATCATCAT------
----GCTCAGCACCAATGTCACCATCTAAAAAGAGTAAAAACAGCAGAAGTAGCAGTAAG
AGTAAATATCAAAATTCAGAGGAGAGATGGCAATCTACAACCAGTAAAGACAATGGTAAA
CCTTCTAGTCCTGGTATAGTTAAGGGACCTTGGAAGGATGAAGAGGATGCAAAATTGGTA
GAGTTGGTTAATAAATGTGGACCAAAGGAATGGTCTTCAATAGCAGCTAAAATACCCGGT
AGAATCGGTAAACAATGCAGAGAGAGATGGTTCAATCATCTCTCACCAGAGGTTAGAAAA
ACAAATTGGACCCCTGAAGAGGATAAAATTATCATTGATGCTCACGCTTCGTTGGGTAAT
AAATGGACTGCAATCTCTAAAATGTTGGATGGTAGACCTGCAAATGCAATTAAAAATCAT
TGGAATTCTACCCTACTCAAAAAAATTGGTGGTGATTCAAAATCTTTAAACAAAGAGAAA
GATGATGACGACGATGACGATGAAGATGCAGAGGATGGTAGTTCTCCAGTTTTATCTCCA
ATATCTTTATATCAATCTTCCTCTTCAACAACAACAACTACTACAACTACTACAACAAAT
TCTTCTGAAAAATCAAATATTCCACCTTTTGCACTCTCTGGTAGTACAACAACCTCTACA
AATAATTTAAATAATAGTACAAATAGTACCAATAGTATTAATAATAATAATAACAATAAA
TAAATAAANAATAAATAAATAAAAAAAC
Length of connected seq. 1158
Full length Seq ID -
Full length Seq. -
Length of full length seq. -