CFC750
Library CF
(Link to library)
Clone ID CFC750
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13830-1
Original site URL
Representative seq. ID CFC750P
(Link to Original site)
Representative DNA sequence
>CFC750 (CFC750Q) /CSM/CF/CFC7-C/CFC750Q.Seq.d/
ATTTATCATCCAAATATTTGTTTATTTATGGGTGCTTGTACTATTCCAGGTAGATGTGTA
ATCGTTACAGAATTAGTACCAAAAGGAAATTTAGAAACACTTTTACATGATCAAAAAATT
CAATTACCATTATATTTAAGAATGAGAATGGCAAGAGATGCAGCATTAGGAATTAATTGG
TTACATGAATCAAACCCTGTATTTGTACATAGAGATATTAAATCATCAAATCTTTTAGTT
GATGAAAATATGAGAGTCAAAATTTGTGATTTTGGTTTAAGTGCATTAAAACAAAAACAT
AAAATGTTAAAAGATCAATCAAGTGCAAAAGGTACACCACTTTATATGGCACCAGAAGTT
ATGATGTTTAAAGAATTTAATGAATCAAGTGATGTTTATTCATTTGGTATTGTATTATGG
GAAATATTAACAAGAXXXXXXXXXXAAAGAGATCATTAGTGCATTGGATCATGTTATCAT
TGATGCCGCTATCTCTGATTTGAATGGTAGAGACTTTTGGAAGAAATCTTTCCTCACCGA
GCAAGAGGTACCTTGGGAGGCATTCATTGATGCACTTTGCAATTGGTCAAAGGCACCAGC
TCGTAATCAATGTGATAAAACTTCAATCGACTATTTAAATATCAAATGTTTGAAAGCAGT
TTTGGCAGAATCTCCAAAATCTGAAGGTACTGGTGTTGAAACCGTTGTAAACATTGAAAA
GTTTGGTAAGATTTTAGAGTTTTTCGGTCCAGTACCTGAACCAGCTCCAGGTCATTCAAT
TATGGACACTGTTAGAGAGATTCTCTCTCAAAAATGGTTCCATGGTGATTTAGACACCAC
TGAAGCAGCTTCACGTTTAAATGGTCAACCAATTGGCTCATTTTTAATTCGTTTCAGTTC
AACCAATGCCGGTTGTTTCACCATTTCTCAAGTGGTCGATGGTGGCTCAATTAAACATCA
AAGAGTCTCAAGACAAGGCGTTAAATTTAACTACCAAAATGTAATTTACAACAGTCTCAT
TGAAATCGTCAGTAAAAATGGTGGTGGTGCTAATGGTGACGTTAAATTAGATTCTCAATT
AGGTGTTCCAAATTATAAATTTATGTCTTTATTCTGTGTATTAAATAAAGAATCAGAAGT
TTACCAATAAATA
sequence update 2001. 6. 1
Translated Amino Acid sequence
IYHPNICLFMGACTIPGRCVIVTELVPKGNLETLLHDQKIQLPLYLRMRMARDAALGINW
LHESNPVFVHRDIKSSNLLVDENMRVKICDFGLSALKQKHKMLKDQSSAKGTPLYMAPEV
MMFKEFNESSDVYSFGIVLWEILTR---

---KEIISALDHVIIDAAISDLNGRDFWKKSFLTEQEVPWEAFIDALCNWSKAPARNQCD
KTSIDYLNIKCLKAVLAESPKSEGTGVETVVNIEKFGKILEFFGPVPEPAPGHSIMDTVR
EILSQKWFHGDLDTTEAASRLNGQPIGSFLIRFSSTNAGCFTISQVVDGGSIKHQRVSRQ
GVKFNYQNVIYNSLIEIVSKNGGGANGDVKLDSQLGVPNYKFMSLFCVLNKESEVYQ*i


Translated Amino Acid sequence (All Frames)
Frame A:
IYHPNICLFMGACTIPGRCVIVTELVPKGNLETLLHDQKIQLPLYLRMRMARDAALGINW
LHESNPVFVHRDIKSSNLLVDENMRVKICDFGLSALKQKHKMLKDQSSAKGTPLYMAPEV
MMFKEFNESSDVYSFGIVLWEILTR---

---KEIISALDHVIIDAAISDLNGRDFWKKSFLTEQEVPWEAFIDALCNWSKAPARNQCD
KTSIDYLNIKCLKAVLAESPKSEGTGVETVVNIEKFGKILEFFGPVPEPAPGHSIMDTVR
EILSQKWFHGDLDTTEAASRLNGQPIGSFLIRFSSTNAGCFTISQVVDGGSIKHQRVSRQ
GVKFNYQNVIYNSLIEIVSKNGGGANGDVKLDSQLGVPNYKFMSLFCVLNKESEVYQ*i

Frame B:
fiiqifvylwvlvlfqvdv*slqn*yqkei*khfymikkfnyhyi*e*ewqemqh*elig
ymnqtlylyieilnhqif*lmki*eskfvilv*vh*nknikc*kinqvqkvhhfiwhqkl
*clknlmnqvmfihlvlyygky*q---

---krslvhwimlslmplsli*mvetfgrnlsspskrylgrhslmhfaigqrhqlvinvi
klqsti*isnv*kqfwqnlqnlkvlvlkpl*tlkslvrf*sfsvqylnqlqviqlwtlle
rfslkngsmvi*tplkqlhv*mvnqlahf*fvsvqpmpvvspflkwsmvaqlnikesqdk
alnlttkm*fttvslkssvkmvvvlmvtln*iln*vfqiinlclysvy*iknqkftnk

Frame C:
lsskylfiygclyysr*mcnryristkrkfrntft*sknsitiifknengkrcsirn*lv
t*ikpcict*ry*iiksfs**kyesqnl*fwfkciktkt*nvkrsikckryttlygtrsy
dv*ri**ik*clfiwycimgnink---

---rdh*cigscyh*cryl*few*rlleeifphrargtlggih*ctlqlvkgtss*sm**
nfnrlfkyqmfessfgriski*rywc*nrckh*kvw*dfrvfrsst*tssrsfnyghc*r
dslskmvpw*frhh*ssftfkwstnwlifnsfqfnqcrlfhhfssgrwwln*tskslktr
r*i*lpkcnlqqsh*nrq*kwwwc*w*r*irfsircskl*iyvfilcik*rirslpin

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFC750 (CFC750Q) /CSM/CF/CFC7-C/CFC750Q.Seq.d/ 2226 0.0
VFF386 (VFF386Q) /CSM/VF/VFF3-D/VFF386Q.Seq.d/ 1402 0.0
SFE710 (SFE710Q) /CSM/SF/SFE7-A/SFE710Q.Seq.d/ 1396 0.0
CFK162 (CFK162Q) /CSM/CF/CFK1-C/CFK162Q.Seq.d/ 1348 0.0
VFO205 (VFO205Q) /CSM/VF/VFO2-A/VFO205Q.Seq.d/ 1324 0.0
SSL638 (SSL638Q) /CSM/SS/SSL6-B/SSL638Q.Seq.d/ 1318 0.0
CFB626 (CFB626Q) /CSM/CF/CFB6-B/CFB626Q.Seq.d/ 1316 0.0
SFC780 (SFC780Q) /CSM/SF/SFC7-D/SFC780Q.Seq.d/ 1314 0.0
AFD569 (AFD569Q) /CSM/AF/AFD5-C/AFD569Q.Seq.d/ 1308 0.0
AFI789 (AFI789Q) /CSM/AF/AFI7-D/AFI789Q.Seq.d/ 1300 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BU582405|BU582405.1 PL N82 P.lunula ZAP-cDNA library Pyrocystis lunula cDNA clone 7315' similar to SHK1 protein kinase, mRNA sequence. 50 2e-19 7
AJ297966|AJ297966.1 Dictyostelium discoideum mRNA for SHK1 protein. 46 5e-10 4
AL034558|AL034558.3 Plasmodium falciparum MAL3P2. 34 0.002 11
AC115584|AC115584.2 Dictyostelium discoideum chromosome 2 map complement(3622543-3568102) strain AX4, complete sequence. 38 0.002 7
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence. 32 0.002 18
BX897661|BX897661.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone. 34 0.003 9
AF250284|AF250284.1 Amsacta moorei entomopoxvirus, complete genome. 34 0.003 12
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 34 0.008 17
AC115581|AC115581.3 Dictyostelium discoideum chromosome 2 map complement(3527391-3470188) strain AX4, complete sequence. 34 0.010 10
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 32 0.011 18
dna update 2004. 5.29
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54Y55) RecName: Full=Dual specificity protein kinase shkC; ... 475 e-132
(Q54RB7) RecName: Full=Dual specificity protein kinase shkA; ... 197 6e-49
T52626(T52626) probable mitogen-activated protein kinase MAP3K d... 152 3e-35
AY075641_1(AY075641|pid:none) Arabidopsis thaliana AT5g11850/F14... 152 3e-35
AM424065_3(AM424065|pid:none) Vitis vinifera contig VV78X125552.... 150 1e-34
AC159538_19(AC159538|pid:none) Medicago truncatula clone mth2-48... 150 1e-34
AB110951_1(AB110951|pid:none) Delphinium 'MagicFountains dark bl... 149 2e-34
(Q54H46) RecName: Full=Probable serine/threonine-protein kinase ... 148 3e-34
AC012679_7(AC012679|pid:none) Arabidopsis thaliana chromosome 1 ... 148 3e-34
EF014094_1(EF014094|pid:none) Synthetic construct HA-tagged prot... 148 3e-34
protein update 2009. 5.12
PSORT

psg: 0.96 gvh: 0.50 alm: 0.31 top: 0.43 tms: 0.07 mit: 0.26 mip: 0.04
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.83 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

24.0 %: endoplasmic reticulum
20.0 %: cytoplasmic
16.0 %: mitochondrial
16.0 %: nuclear
12.0 %: Golgi
4.0 %: plasma membrane
4.0 %: vesicles of secretory system
4.0 %: extracellular, including cell wall

>> prediction for CFC750 is end

5' end seq. ID CFC750F
5' end seq.
>CFC750F.Seq
ATTTATCATCCAAATATTTGTTTATTTATGGGTGCTTGTACTATTCCAGGTAGATGTGTA
ATCGTTACAGAATTAGTACCAAAAGGAAATTTAGAAACACTTTTACATGATCAAAAAATT
CAATTACCATTATATTTAAGAATGAGAATGGCAAGAGATGCAGCATTAGGAATTAATTGG
TTACATGAATCAAACCCTGTATTTGTACATAGAGATATTAAATCATCAAATCTTTTAGTT
GATGAAAATATGAGAGTCAAAATTTGTGATTTTGGTTTAAGTGCATTAAAACAAAAACAT
AAAATGTTAAAAGATCAATCAAGTGCAAAAGGTACACCACTTTATATGGCACCAGAAGTT
ATGATGTTTAAAGAATTTAATGAATCAAGTGATGTTTATTCATTTGGTATTGTATTATGG
GAAATATTAACAAGA----------
Length of 5' end seq. 435
3' end seq. ID CFC750Z
3' end seq.
>CFC750Z.Seq
----------AAAGAGATCATTAGTGCATTGGATCATGTTATCATTGATGCCGCTATCTC
TGATTTGAATGGTAGAGACTTTTGGAAGAAATCTTTCCTCACCGAGCAAGAGGTACCTTG
GGAGGCATTCATTGATGCACTTTGCAATTGGTCAAAGGCACCAGCTCGTAATCAATGTGA
TAAAACTTCAATCGACTATTTAAATATCAAATGTTTGAAAGCAGTTTTGGCAGAATCTCC
AAAATCTGAAGGTACTGGTGTTGAAACCGTTGTAAACATTGAAAAGTTTGGTAAGATTTT
AGAGTTTTTCGGTCCAGTACCTGAACCAGCTCCAGGTCATTCAATTATGGACACTGTTAG
AGAGATTCTCTCTCAAAAATGGTTCCATGGTGATTTAGACACCACTGAAGCAGCTTCACG
TTTAAATGGTCAACCAATTGGCTCATTTTTAATTCGTTTCAGTTCAACCAATGCCGGTTG
TTTCACCATTTCTCAAGTGGTCGATGGTGGCTCAATTAAACATCAAAGAGTCTCAAGACA
AGGCGTTAAATTTAACTACCAAAATGTAATTTACAACAGTCTCATTGAAATCGTCAGTAA
AAATGGTGGTGGTGCTAATGGTGACGTTAAATTAGATTCTCAATTAGGTGTTCCAAATTA
TAAATTTATGTCTTTATTCTGTGTATTAAATAAAGAATCAGAAGTTTACCAATAAATA
Length of 3' end seq. 708
Connected seq. ID CFC750P
Connected seq.
>CFC750P.Seq
ATTTATCATCCAAATATTTGTTTATTTATGGGTGCTTGTACTATTCCAGGTAGATGTGTA
ATCGTTACAGAATTAGTACCAAAAGGAAATTTAGAAACACTTTTACATGATCAAAAAATT
CAATTACCATTATATTTAAGAATGAGAATGGCAAGAGATGCAGCATTAGGAATTAATTGG
TTACATGAATCAAACCCTGTATTTGTACATAGAGATATTAAATCATCAAATCTTTTAGTT
GATGAAAATATGAGAGTCAAAATTTGTGATTTTGGTTTAAGTGCATTAAAACAAAAACAT
AAAATGTTAAAAGATCAATCAAGTGCAAAAGGTACACCACTTTATATGGCACCAGAAGTT
ATGATGTTTAAAGAATTTAATGAATCAAGTGATGTTTATTCATTTGGTATTGTATTATGG
GAAATATTAACAAGA----------AAAGAGATCATTAGTGCATTGGATCATGTTATCAT
TGATGCCGCTATCTCTGATTTGAATGGTAGAGACTTTTGGAAGAAATCTTTCCTCACCGA
GCAAGAGGTACCTTGGGAGGCATTCATTGATGCACTTTGCAATTGGTCAAAGGCACCAGC
TCGTAATCAATGTGATAAAACTTCAATCGACTATTTAAATATCAAATGTTTGAAAGCAGT
TTTGGCAGAATCTCCAAAATCTGAAGGTACTGGTGTTGAAACCGTTGTAAACATTGAAAA
GTTTGGTAAGATTTTAGAGTTTTTCGGTCCAGTACCTGAACCAGCTCCAGGTCATTCAAT
TATGGACACTGTTAGAGAGATTCTCTCTCAAAAATGGTTCCATGGTGATTTAGACACCAC
TGAAGCAGCTTCACGTTTAAATGGTCAACCAATTGGCTCATTTTTAATTCGTTTCAGTTC
AACCAATGCCGGTTGTTTCACCATTTCTCAAGTGGTCGATGGTGGCTCAATTAAACATCA
AAGAGTCTCAAGACAAGGCGTTAAATTTAACTACCAAAATGTAATTTACAACAGTCTCAT
TGAAATCGTCAGTAAAAATGGTGGTGGTGCTAATGGTGACGTTAAATTAGATTCTCAATT
AGGTGTTCCAAATTATAAATTTATGTCTTTATTCTGTGTATTAAATAAAGAATCAGAAGT
TTACCAATAAATA
Length of connected seq. 1143
Full length Seq ID -
Full length Seq. -
Length of full length seq. -