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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFC748
Library CF
(Link to library)
Clone ID CFC748
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16376-1
Original site URL
Representative seq. ID CFC748P
(Link to Original site)
Representative DNA sequence 
>CFC748 (CFC748Q) /CSM/CF/CFC7-B/CFC748Q.Seq.d/
TATATTAAATTTCTAAAAATGGTGTTTAAGAAAATATTATTTATTTTAATATTATCTTTA
TTATATTCATTGGTTTTATCTGAAGAAATTAAAAATAATGAAAATGATGCTAAATCATTT
GTAATTGAAAAAGTTATTGGACAAATTCAAGAATATGCAAATAAATATAATTTAAATCAA
AATCAATTAGTTAGTGTAATAACATATGCATGTAGTTATAAACCAGAGAAATGTTCAATT
TATAATAATCAATTACCTGAAAATTTATTATCAACAGCAAAAGTAATATTACAATCAAAA
TCTGATGAAATTGTAAAATTAATTCAAGATAATATTAAATCAAATGATTTTAAATTCTCT
GCTGAAACCAATAAGAAATTGGAAAGATTATTAATTAGTTTAAATTTATTAGGTGGTTTA
ATAGGTGGTACAAATGGACCACCAATAGCCGCTTCAATAAATACTCAAAATGAACCAGAC
AATAGACAAAATGCACCAATCGCTCAAAATTTCCAACAGTATCAACAAAATCAACCAATT
CCAAATCAAAATCAAATTTCAAATCAAAATCAAATTTCAAATCAAAATCAAAATCAAAAT
CAAAATCAAAATCAAXXXXXXXXXXTTNNNNANNNNNANNNNNTNNNNNNTNNNANTNNN
NNTNNNANTNANAATNANANTNNNNNTNANNNTNNNNNTTNNNNANATANNNAAGNTNNN
NTTNAAGNNNNNNTTNNAATGNANANANATTATAGGGAATNTNNNNATANANGTNNAATG
NAGNAAAAAGNANGTTTGNNTGCATTGGCNCTTCANCANCNATTGGAAAGNCANCNNAAT
GAAGANAATCAAGAGGAATTTGATGAACTTGNNNCAATTTTAAATGAGATTCCAGATATT
CCAGTTCAAACNCAACCACAACCATCTATTCCAGTTGTTAAAACAAAACCACCTCAAACT
GAACAACCACCTCAAACTAAAAAACCAACTCCTGCTCCAACATTACCACCACCACAACCA
CCACAACCACAACAACCAAATACTCAATCACCACCAGTTGTTCAAACAAATTCACCAAAA
TCTGAGAGTACTTTATCAGATTATGCAAGTTACTTTGACCAATTCTTAAATATCGTTGAT
TTATTCACTCAAAAGTATAATCAACAACATCAACAAGATAAAAAGGTTGAAAATAATAAC
CAAATTGATAATATTNAAATTGAAAATAATCTTTCAAAAGTTTCACCAGCACTTTCAAAA
AAATAAAATTAAATAAATAAAAATTTTTAAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
YIKFLKMVFKKILFILILSLLYSLVLSEEIKNNENDAKSFVIEKVIGQIQEYANKYNLNQ
NQLVSVITYACSYKPEKCSIYNNQLPENLLSTAKVILQSKSDEIVKLIQDNIKSNDFKFS
AETNKKLERLLISLNLLGGLIGGTNGPPIAASINTQNEPDNRQNAPIAQNFQQYQQNQPI
PNQNQISNQNQISNQNQNQNQNQNQ---

---XXXXXXXXXXXXXXXNXXXXXXXXXXXXXXXXXXXXXMXXXYREXXXXXXMXXKXXL
XALALXXXLEXXXNEXNQEEFDELXXILNEIPDIPVQTQPQPSIPVVKTKPPQTEQPPQT
KKPTPAPTLPPPQPPQPQQPNTQSPPVVQTNSPKSESTLSDYASYFDQFLNIVDLFTQKY
NQQHQQDKKVENNNQIDNIXIENNLSKVSPALSKK*n*inknf*
Translated Amino Acid sequence (All Frames) 
Frame A:
YIKFLKMVFKKILFILILSLLYSLVLSEEIKNNENDAKSFVIEKVIGQIQEYANKYNLNQ
NQLVSVITYACSYKPEKCSIYNNQLPENLLSTAKVILQSKSDEIVKLIQDNIKSNDFKFS
AETNKKLERLLISLNLLGGLIGGTNGPPIAASINTQNEPDNRQNAPIAQNFQQYQQNQPI
PNQNQISNQNQISNQNQNQNQNQNQ---

---xxxxxxxxxxxxxxxxxxxxxxxxxxxixkxxxkxxxxxxxiignxxixvxxxkkxv
xxhwxfxxxwkxxxmkxikrnlmnlxqf*mrfqifqfkxnhnhlfqllkqnhlklnnhlk
lknqlllqhyhhhnhhnhnnqilnhhqlfkqihqnlrvlyqimqvtltns*isliyslks
iinninkikrlkiitkliixklkiifqkfhqhfqknkik*ikifk

Frame B:
ilnf*kwclrkyylf*yylyyihwfylkklkimkmmlnhl*lkklldkfknmqinii*ik
in*lv**hmhvvinqrnvqfiiinylkiyyqqqk*yynqnlmkl*n*fkiilnqmilnsl
lkpirnwkdy*lv*iy*vv**vvqmdhq*plq*ilkmnqtidkmhqslkisnsinkinqf
qikikfqikikfqikikikikiki---

---xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxnxxxl*gxxxxxxnxxkxxf
xcigxsxxigkxxx*rxsrgi**txxnfk*dsrysssnxtttiyssc*nkttsn*tttsn
*ktnscsnitttttttttttkysittscsnkftki*eyfirlckll*pilkyr*fihskv
*sttstr*kg*k**pn**yxn*k*sfksftstfkkiklnk*kflk

Frame C:
y*iskngv*eniiyfniifiifigfi*rn*k**k*c*iicn*ksywtnsrick*i*fksk
sis*cnnicm*l*tremfnl**sit*kfiinsksnitiki**nckinsr*y*ik*f*ilc
*nq*eigkiin*fkfirwfnrwykwttnsrfnkysk*trq*tkctnrskfptvstkstns
ksksnfksksnfksksksksksks---

---XXXXXXXXXXXXXXXNXXXXXXXXXXXXXXXXXXXXXMXXXYREXXXXXXMXXKXXL
XALALXXXLEXXXNEXNQEEFDELXXILNEIPDIPVQTQPQPSIPVVKTKPPQTEQPPQT
KKPTPAPTLPPPQPPQPQQPNTQSPPVVQTNSPKSESTLSDYASYFDQFLNIVDLFTQKY
NQQHQQDKKVENNNQIDNIXIENNLSKVSPALSKK*n*inknf*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFD873 (SFD873Q) /CSM/SF/SFD8-D/SFD873Q.Seq.d/                        874   0.0
CHE512 (CHE512Q) /CSM/CH/CHE5-A/CHE512Q.Seq.d/                        874   0.0
CHD805 (CHD805Q) /CSM/CH/CHD8-A/CHD805Q.Seq.d/                        874   0.0
CHB715 (CHB715Q) /CSM/CH/CHB7-A/CHB715Q.Seq.d/                        874   0.0
CHB525 (CHB525Q) /CSM/CH/CHB5-B/CHB525Q.Seq.d/                        874   0.0
CHA603 (CHA603Q) /CSM/CH/CHA6-A/CHA603Q.Seq.d/                        874   0.0
CHA233 (CHA233Q) /CSM/CH/CHA2-B/CHA233Q.Seq.d/                        874   0.0
CFI154 (CFI154Q) /CSM/CF/CFI1-C/CFI154Q.Seq.d/                        874   0.0
CFH885 (CFH885Q) /CSM/CF/CFH8-D/CFH885Q.Seq.d/                        874   0.0
CFH784 (CFH784Q) /CSM/CF/CFH7-D/CFH784Q.Seq.d/                        874   0.0
own update 2002.11.17
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.   864   0.0    20
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 2/4.    38   4e-09  20
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    34   8e-09  25
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    36   1e-08  20
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    38   3e-07  15
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    34   5e-07  20
AB063521|AB063521.2 Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis DNA, complete genome, section 1/2.    38   9e-07  17
AJ010592|AJ010592.2 Guillardia theta DNA for complete sequence of nucleomorph chromosome 2.    34   1e-06  16
AP004173|AP004173.1 Mycoplasma penetrans genomic DNA, complete sequence, section 4/5.    36   2e-06  15
AC117072|AC117072.3 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    32   3e-06  17
dna update 2004. 5.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116986_69(AC116986|pid:none) Dictyostelium discoideum chromoso...   238   3e-61
CP000728_3040(CP000728|pid:none) Clostridium botulinum F str. La...    40   0.23
AF125322_12(AF125322|pid:none) Escherichia coli O7-specific lipo...    38   0.87
CP001205_274(CP001205|pid:none) Borrelia burgdorferi ZS7, comple...    37   1.5
L76303_16(L76303|pid:none) Borrelia burgdorferi ftsA gene, 3' en...    37   1.5
U43739_19(U43739|pid:none) Borrelia burgdorferi fesmid clone 31,...    37   1.5
AE000783_284(AE000783|pid:none) Borrelia burgdorferi B31, comple...    37   1.5
CP001499_30(CP001499|pid:none) Borrelia burgdorferi 94a plasmid ...    37   1.9
AE014187_26(AE014187|pid:none) Plasmodium falciparum 3D7 chromos...    37   1.9
AB490074_12(AB490074|pid:none) Escherichia coli B wbb operon gen...    36   3.3
protein update 2009. 5.12
PSORT 

 psg: 0.98  gvh: 0.81  alm: 0.40  top: 0.07  tms: 0.00  mit: 0.31  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: extracellular, including cell wall
	 12.0 %: cytoplasmic
	 12.0 %: vacuolar
	 12.0 %: endoplasmic reticulum
	  8.0 %: nuclear
	  4.0 %: mitochondrial

>> prediction for CFC748 is exc
5' end seq. ID CFC748F
5' end seq. 
>CFC748F.Seq
TATATTAAATTTCTAAAAATGGTGTTTAAGAAAATATTATTTATTTTAATATTATCTTTA
TTATATTCATTGGTTTTATCTGAAGAAATTAAAAATAATGAAAATGATGCTAAATCATTT
GTAATTGAAAAAGTTATTGGACAAATTCAAGAATATGCAAATAAATATAATTTAAATCAA
AATCAATTAGTTAGTGTAATAACATATGCATGTAGTTATAAACCAGAGAAATGTTCAATT
TATAATAATCAATTACCTGAAAATTTATTATCAACAGCAAAAGTAATATTACAATCAAAA
TCTGATGAAATTGTAAAATTAATTCAAGATAATATTAAATCAAATGATTTTAAATTCTCT
GCTGAAACCAATAAGAAATTGGAAAGATTATTAATTAGTTTAAATTTATTAGGTGGTTTA
ATAGGTGGTACAAATGGACCACCAATAGCCGCTTCAATAAATACTCAAAATGAACCAGAC
AATAGACAAAATGCACCAATCGCTCAAAATTTCCAACAGTATCAACAAAATCAACCAATT
CCAAATCAAAATCAAATTTCAAATCAAAATCAAATTTCAAATCAAAATCAAAATCAAAAT
CAAAATCAAAATCAA----------
Length of 5' end seq. 615
3' end seq. ID CFC748Z
3' end seq. 
>CFC748Z.Seq
----------TTNNNNANNNNNANNNNNTNNNNNNTNNNANTNNNNNTNNNANTNANAAT
NANANTNNNNNTNANNNTNNNNNTTNNNNANATANNNAAGNTNNNNTTNAAGNNNNNNTT
NNAATGNANANANATTATAGGGAATNTNNNNATANANGTNNAATGNAGNAAAAAGNANGT
TTGNNTGCATTGGCNCTTCANCANCNATTGGAAAGNCANCNNAATGAAGANAATCAAGAG
GAATTTGATGAACTTGNNNCAATTTTAAATGAGATTCCAGATATTCCAGTTCAAACNCAA
CCACAACCATCTATTCCAGTTGTTAAAACAAAACCACCTCAAACTGAACAACCACCTCAA
ACTAAAAAACCAACTCCTGCTCCAACATTACCACCACCACAACCACCACAACCACAACAA
CCAAATACTCAATCACCACCAGTTGTTCAAACAAATTCACCAAAATCTGAGAGTACTTTA
TCAGATTATGCAAGTTACTTTGACCAATTCTTAAATATCGTTGATTTATTCACTCAAAAG
TATAATCAACAACATCAACAAGATAAAAAGGTTGAAAATAATAACCAAATTGATAATATT
NAAATTGAAAATAATCTTTCAAAAGTTTCACCAGCACTTTCAAAAAAATAAAATTAAATA
AATAAAAATTTTTAAAA
Length of 3' end seq. 667
Connected seq. ID CFC748P
Connected seq. 
>CFC748P.Seq
TATATTAAATTTCTAAAAATGGTGTTTAAGAAAATATTATTTATTTTAATATTATCTTTA
TTATATTCATTGGTTTTATCTGAAGAAATTAAAAATAATGAAAATGATGCTAAATCATTT
GTAATTGAAAAAGTTATTGGACAAATTCAAGAATATGCAAATAAATATAATTTAAATCAA
AATCAATTAGTTAGTGTAATAACATATGCATGTAGTTATAAACCAGAGAAATGTTCAATT
TATAATAATCAATTACCTGAAAATTTATTATCAACAGCAAAAGTAATATTACAATCAAAA
TCTGATGAAATTGTAAAATTAATTCAAGATAATATTAAATCAAATGATTTTAAATTCTCT
GCTGAAACCAATAAGAAATTGGAAAGATTATTAATTAGTTTAAATTTATTAGGTGGTTTA
ATAGGTGGTACAAATGGACCACCAATAGCCGCTTCAATAAATACTCAAAATGAACCAGAC
AATAGACAAAATGCACCAATCGCTCAAAATTTCCAACAGTATCAACAAAATCAACCAATT
CCAAATCAAAATCAAATTTCAAATCAAAATCAAATTTCAAATCAAAATCAAAATCAAAAT
CAAAATCAAAATCAA----------TTNNNNANNNNNANNNNNTNNNNNNTNNNANTNNN
NNTNNNANTNANAATNANANTNNNNNTNANNNTNNNNNTTNNNNANATANNNAAGNTNNN
NTTNAAGNNNNNNTTNNAATGNANANANATTATAGGGAATNTNNNNATANANGTNNAATG
NAGNAAAAAGNANGTTTGNNTGCATTGGCNCTTCANCANCNATTGGAAAGNCANCNNAAT
GAAGANAATCAAGAGGAATTTGATGAACTTGNNNCAATTTTAAATGAGATTCCAGATATT
CCAGTTCAAACNCAACCACAACCATCTATTCCAGTTGTTAAAACAAAACCACCTCAAACT
GAACAACCACCTCAAACTAAAAAACCAACTCCTGCTCCAACATTACCACCACCACAACCA
CCACAACCACAACAACCAAATACTCAATCACCACCAGTTGTTCAAACAAATTCACCAAAA
TCTGAGAGTACTTTATCAGATTATGCAAGTTACTTTGACCAATTCTTAAATATCGTTGAT
TTATTCACTCAAAAGTATAATCAACAACATCAACAAGATAAAAAGGTTGAAAATAATAAC
CAAATTGATAATATTNAAATTGAAAATAATCTTTCAAAAGTTTCACCAGCACTTTCAAAA
AAATAAAATTAAATAAATAAAAATTTTTAAAA
Length of connected seq. 1282
Full length Seq ID -
Full length Seq. -
Length of full length seq. -