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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFC741
Library CF
(Link to library)
Clone ID CFC741
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16419-1
Original site URL
Representative seq. ID CFC741P
(Link to Original site)
Representative DNA sequence 
>CFC741 (CFC741Q) /CSM/CF/CFC7-B/CFC741Q.Seq.d/
ATTATTCAATTTTATTTTTAATCAATTCAAATTAAAAAAAAAAACAATAACTAACTAAGT
TAAAAATAAAAAATAATAAAGGATGTTGTTTNTAAAAAATATTGGAGTATTTTTTATGAT
ATTCCTTGTATCAAAATCCTATGCGACGGATTGTAATAAAATTACTAATGAAGAAGAATG
TCATAAATCTTCGGAATGTATTGTTATAAATTATACNCCATGTTGNGGNGAACAAAAATG
GGCTTGCTNTAAAGGTNCATTTGATACTTGTNCATATGAAAATAGTTGTTATAGAAATTC
ATCCAATAACCAAGTTGTTGAAGTATCAAATAAATGCTTCAATCTTGATGGATTTATTAA
AATTACAACTCCAACCGAGTNTTCTTGTTCTGATGCCAAGGTTAAAGAATGNGCCTTATT
AGGTAAATCATGTAGTTTCCAAAANAACTNTTGTTCAAATCCAACCTCCTGTTGGCCAGG
NGAATCAATTTGNGAAGGTTTAAGCTXXXXXXXXXXAGTTTGCTNTTTAAGATGTCCNCC
CAAATTCATGAATGTAGATTTTAATGACCAAGGTCATCAATGCTGTGTAAAGGTTCACCA
TGATAGATGTTCATTAAGATGTCCACATGGCCATGAATGTAAAGTTGATCACAATGGTAA
AGAATGTTGCGTCAGATCCCATAGACCACCACCACCAGAAGTTTGTTCATTAAGATGCCC
ACCAAAACATGAATGTAAATTTGATGATCATGGTAAAAAATGTTGTGTAAAGATTCATTG
TGATGAAGTTTGTGATTTAGATTGTGGTAGAGGTTTTGAATGTAAAATTAGACATGATGG
TTCAAAATGTTGTGTCCGTTCAGAAAGACCACACCCACCACAACATGAAAAATGTAATAA
GAGATGCCCACCAGGCCATGAATGTAAAGTTGATCAACATGGAAAAGAATGTTGCGTTGT
TGCCCATAGACCACCACCAAAATGCTCTTTAAGATGTCCACCAAGACATGAATGTAGAGT
CAACCACTTTGGCGAAGAATGTTGTGTTAAAGTTCACCACGATAAATGTTCATTGAGATG
TCCACCAGGCCATGAATGTAAAGTTGATCAACATGGAAAAGAATGTTGCGTTGTTGCCCA
TAGACCACCACCAAAATGCTCATTAAGATGTCCACCAAAACATGAATGTAGAATCAATCA
CTTTGGTGAAGAATGCTGTGTTAAAAGTAGAAATGATTGTTTAACTTGTGAAGACCTAAA
CTGTGAAAGAAAAGGTTTACATTGTGCCATGAAAACTGTACCAATGATAAAGAAAATTGT
TGTAAAAAGTTCCAGTATGTATTCCACNATCCATTATTAGA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
lfnfifnqfklkkktitn*vknkk**RMLFXKNIGVFFMIFLVSKSYATDCNKITNEEEC
HKSSECIVINYTPCXGEQKWACXKGXFDTCXYENSCYRNSSNNQVVEVSNKCFNLDGFIK
ITTPTEXSCSDAKVKEXALLGKSCSFQXNXCSNPTSCWPGESIXEGLS---

---VCXLRCPPKFMNVDFNDQGHQCCVKVHHDRCSLRCPHGHECKVDHNGKECCVRSHRP
PPPEVCSLRCPPKHECKFDDHGKKCCVKIHCDEVCDLDCGRGFECKIRHDGSKCCVRSER
PHPPQHEKCNKRCPPGHECKVDQHGKECCVVAHRPPPKCSLRCPPRHECRVNHFGEECCV
KVHHDKCSLRCPPGHECKVDQHGKECCVVAHRPPPKCSLRCPPKHECRINHFGEECCVKS
RNDCLTCEDLNCERKGLHCAMKTVPMIKKIVVKSSSMYSTIHY*
Translated Amino Acid sequence (All Frames) 
Frame A:
iiqfyf*siqikkknnn*ls*k*kiikdvvxkkywsifydipcikilcdgl**ny**rrm
s*ifgmycyklyxmlxxtkmgll*rxi*ylxi*k*ll*kfiq*psc*sik*mlqs*wiy*
nynsnrvflf*cqg*rmxlir*im*fpkxllfksnlllarxinlxrfk---

---sllfkmsxqihecrf**prssmlckgsp**mfikmstwp*m*s*sqw*rmlrqip*t
tttrslfikmptkt*m*i**sw*kmlckdsl**sl*frlw*rf*m*n*t*wfkmlcpfrk
ttpttt*km**emptrp*m*s*stwkrmlrccp*tttkmlfkmstkt*m*sqplwrrmlc
*sspr*mfiemstrp*m*s*stwkrmlrccp*tttkmlikmstkt*m*nqslw*rmlc*k
*k*lfnl*rpkl*kkrftlchenctndkencckkfqyvfhxpll

Frame B:
lfnfifnqfklkkktitn*vknkk**RMLFXKNIGVFFMIFLVSKSYATDCNKITNEEEC
HKSSECIVINYTPCXGEQKWACXKGXFDTCXYENSCYRNSSNNQVVEVSNKCFNLDGFIK
ITTPTEXSCSDAKVKEXALLGKSCSFQXNXCSNPTSCWPGESIXEGLS---

---VCXLRCPPKFMNVDFNDQGHQCCVKVHHDRCSLRCPHGHECKVDHNGKECCVRSHRP
PPPEVCSLRCPPKHECKFDDHGKKCCVKIHCDEVCDLDCGRGFECKIRHDGSKCCVRSER
PHPPQHEKCNKRCPPGHECKVDQHGKECCVVAHRPPPKCSLRCPPRHECRVNHFGEECCV
KVHHDKCSLRCPPGHECKVDQHGKECCVVAHRPPPKCSLRCPPKHECRINHFGEECCVKS
RNDCLTCEDLNCERKGLHCAMKTVPMIKKIVVKSSSMYSTIHY*

Frame C:
ysilflinsn*kkkq*ltklkiknnkgccx*kileyfl*yslyqnpmrrivikllmkknv
inlrnvll*iixhvxxnknglaxkvhlilvhmkivvieihpitkllkyqinasilmdllk
lqlqpsxlvlmprlknxpy*vnhvvskxtxvqiqppvgqxnqfxkv*a---

---fax*dvxpns*m*ilmtkvinav*rftmidvh*dvhmamnvklitmvknvasdpidh
hhqkfvh*dahqnmnvnlmimvknvv*rfivmkfvi*ivvevlnvkldmmvqnvvsvqkd
hthhnmknvirdahqamnvklinmeknvallpidhhqnal*dvhqdmnvesttlaknvvl
kfttinvh*dvhqamnvklinmeknvallpidhhqnah*dvhqnmnvesitlvknavlkv
emiv*lvkt*tvkekvyivp*klyq**rkll*kvpvcipxsiir
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFC741 (CFC741Q) /CSM/CF/CFC7-B/CFC741Q.Seq.d/                       2351   0.0
SFI216 (SFI216Q) /CSM/SF/SFI2-A/SFI216Q.Seq.d/                       1610   0.0
CHH443 (CHH443Q) /CSM/CH/CHH4-B/CHH443Q.Seq.d/                       1582   0.0
AHC814 (AHC814Q) /CSM/AH/AHC8-A/AHC814Q.Seq.d/                       1582   0.0
SFG663 (SFG663Q) /CSM/SF/SFG6-C/SFG663Q.Seq.d/                       1578   0.0
SFE550 (SFE550Q) /CSM/SF/SFE5-C/SFE550Q.Seq.d/                       1576   0.0
AFM858 (AFM858Q) /CSM/AF/AFM8-C/AFM858Q.Seq.d/                       1576   0.0
AFI214 (AFI214Q) /CSM/AF/AFI2-A/AFI214Q.Seq.d/                       1568   0.0
SFC870 (SFC870Q) /CSM/SF/SFC8-C/SFC870Q.Seq.d/                       1566   0.0
SFB458 (SFB458Q) /CSM/SF/SFB4-C/SFB458Q.Seq.d/                       1566   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25144|U25144.1 Dictyostelium discoideum spore coat protein SP87 (PspD) gene, complete cds.  1471   0.0    11
AC117267|AC117267.2 Dictyostelium discoideum chromosome 2 map 5836255-5862024 strain AX4, complete sequence.  1471   0.0    12
M26239|M26239.1 D.discoideum spore coat protein SP60 gene, complete cds.    66   2e-16  4
X51892|X51892.1 Dictyostelium discoideum SP60 gene for spore coat protein.    66   5e-16  4
X52105|X52105.1 Dictyostelium discoideum SP60 gene for spore coat protein.    48   3e-04  2
AC133864|AC133864.11 Medicago truncatula clone mth2-18d12, WORKING DRAFT SEQUENCE, 4 ordered pieces.    42   0.004  4
AC124167|AC124167.2 Tetraodon nigroviridis clone GSTNB-42J2, WORKING DRAFT SEQUENCE, 14 unordered pieces.    38   0.010  5
AL139079|AL139079.2 Campylobacter jejuni NCTC11168 complete genome; segment 6/6.    38   0.026  7
AL445564|AL445564.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 2/3.    32   0.029  14
AC141955|AC141955.2 Rattus norvegicus clone CH230-418P10, WORKING DRAFT SEQUENCE, 29 unordered pieces.    48   0.037  4
dna update 2004. 5.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom...   607   e-172
(P15270) RecName: Full=Spore coat protein SP60; Flags: Precursor...   206   2e-51
X52105_1(X52105|pid:none) Dictyostelium discoideum SP60 gene for...   125   3e-27
(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor;       117   8e-25
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87...   113   1e-23
(Q6TU45) RecName: Full=Probable spore coat protein sigD; AltName...   110   1e-22
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;...    91   1e-16
(P54704) RecName: Full=Spore coat protein SP85; AltName: Full=Ce...    71   8e-11
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -...    70   2e-10
(P14328) RecName: Full=Spore coat protein SP96;  &AC117075_49(AC...    70   2e-10
protein update 2009. 5.12
PSORT 

 psg: 1.02  gvh: 0.68  alm: 0.46  top: 0.20  tms: 0.00  mit: 0.38  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: extracellular, including cell wall
	 12.0 %: cytoplasmic
	 12.0 %: vacuolar
	 12.0 %: endoplasmic reticulum
	  4.0 %: mitochondrial
	  4.0 %: nuclear

>> prediction for CFC741 is exc
5' end seq. ID CFC741F
5' end seq. 
>CFC741F.Seq
ATTATTCAATTTTATTTTTAATCAATTCAAATTAAAAAAAAAAACAATAACTAACTAAGT
TAAAAATAAAAAATAATAAAGGATGTTGTTTNTAAAAAATATTGGAGTATTTTTTATGAT
ATTCCTTGTATCAAAATCCTATGCGACGGATTGTAATAAAATTACTAATGAAGAAGAATG
TCATAAATCTTCGGAATGTATTGTTATAAATTATACNCCATGTTGNGGNGAACAAAAATG
GGCTTGCTNTAAAGGTNCATTTGATACTTGTNCATATGAAAATAGTTGTTATAGAAATTC
ATCCAATAACCAAGTTGTTGAAGTATCAAATAAATGCTTCAATCTTGATGGATTTATTAA
AATTACAACTCCAACCGAGTNTTCTTGTTCTGATGCCAAGGTTAAAGAATGNGCCTTATT
AGGTAAATCATGTAGTTTCCAAAANAACTNTTGTTCAAATCCAACCTCCTGTTGGCCAGG
NGAATCAATTTGNGAAGGTTTAAGCT----------
Length of 5' end seq. 506
3' end seq. ID CFC741Z
3' end seq. 
>CFC741Z.Seq
----------AGTTTGCTNTTTAAGATGTCCNCCCAAATTCATGAATGTAGATTTTAATG
ACCAAGGTCATCAATGCTGTGTAAAGGTTCACCATGATAGATGTTCATTAAGATGTCCAC
ATGGCCATGAATGTAAAGTTGATCACAATGGTAAAGAATGTTGCGTCAGATCCCATAGAC
CACCACCACCAGAAGTTTGTTCATTAAGATGCCCACCAAAACATGAATGTAAATTTGATG
ATCATGGTAAAAAATGTTGTGTAAAGATTCATTGTGATGAAGTTTGTGATTTAGATTGTG
GTAGAGGTTTTGAATGTAAAATTAGACATGATGGTTCAAAATGTTGTGTCCGTTCAGAAA
GACCACACCCACCACAACATGAAAAATGTAATAAGAGATGCCCACCAGGCCATGAATGTA
AAGTTGATCAACATGGAAAAGAATGTTGCGTTGTTGCCCATAGACCACCACCAAAATGCT
CTTTAAGATGTCCACCAAGACATGAATGTAGAGTCAACCACTTTGGCGAAGAATGTTGTG
TTAAAGTTCACCACGATAAATGTTCATTGAGATGTCCACCAGGCCATGAATGTAAAGTTG
ATCAACATGGAAAAGAATGTTGCGTTGTTGCCCATAGACCACCACCAAAATGCTCATTAA
GATGTCCACCAAAACATGAATGTAGAATCAATCACTTTGGTGAAGAATGCTGTGTTAAAA
GTAGAAATGATTGTTTAACTTGTGAAGACCTAAACTGTGAAAGAAAAGGTTTACATTGTG
CCATGAAAACTGTACCAATGATAAAGAAAATTGTTGTAAAAAGTTCCAGTATGTATTCCA
CNATCCATTATTAGA
Length of 3' end seq. 845
Connected seq. ID CFC741P
Connected seq. 
>CFC741P.Seq
ATTATTCAATTTTATTTTTAATCAATTCAAATTAAAAAAAAAAACAATAACTAACTAAGT
TAAAAATAAAAAATAATAAAGGATGTTGTTTNTAAAAAATATTGGAGTATTTTTTATGAT
ATTCCTTGTATCAAAATCCTATGCGACGGATTGTAATAAAATTACTAATGAAGAAGAATG
TCATAAATCTTCGGAATGTATTGTTATAAATTATACNCCATGTTGNGGNGAACAAAAATG
GGCTTGCTNTAAAGGTNCATTTGATACTTGTNCATATGAAAATAGTTGTTATAGAAATTC
ATCCAATAACCAAGTTGTTGAAGTATCAAATAAATGCTTCAATCTTGATGGATTTATTAA
AATTACAACTCCAACCGAGTNTTCTTGTTCTGATGCCAAGGTTAAAGAATGNGCCTTATT
AGGTAAATCATGTAGTTTCCAAAANAACTNTTGTTCAAATCCAACCTCCTGTTGGCCAGG
NGAATCAATTTGNGAAGGTTTAAGCT----------AGTTTGCTNTTTAAGATGTCCNCC
CAAATTCATGAATGTAGATTTTAATGACCAAGGTCATCAATGCTGTGTAAAGGTTCACCA
TGATAGATGTTCATTAAGATGTCCACATGGCCATGAATGTAAAGTTGATCACAATGGTAA
AGAATGTTGCGTCAGATCCCATAGACCACCACCACCAGAAGTTTGTTCATTAAGATGCCC
ACCAAAACATGAATGTAAATTTGATGATCATGGTAAAAAATGTTGTGTAAAGATTCATTG
TGATGAAGTTTGTGATTTAGATTGTGGTAGAGGTTTTGAATGTAAAATTAGACATGATGG
TTCAAAATGTTGTGTCCGTTCAGAAAGACCACACCCACCACAACATGAAAAATGTAATAA
GAGATGCCCACCAGGCCATGAATGTAAAGTTGATCAACATGGAAAAGAATGTTGCGTTGT
TGCCCATAGACCACCACCAAAATGCTCTTTAAGATGTCCACCAAGACATGAATGTAGAGT
CAACCACTTTGGCGAAGAATGTTGTGTTAAAGTTCACCACGATAAATGTTCATTGAGATG
TCCACCAGGCCATGAATGTAAAGTTGATCAACATGGAAAAGAATGTTGCGTTGTTGCCCA
TAGACCACCACCAAAATGCTCATTAAGATGTCCACCAAAACATGAATGTAGAATCAATCA
CTTTGGTGAAGAATGCTGTGTTAAAAGTAGAAATGATTGTTTAACTTGTGAAGACCTAAA
CTGTGAAAGAAAAGGTTTACATTGTGCCATGAAAACTGTACCAATGATAAAGAAAATTGT
TGTAAAAAGTTCCAGTATGTATTCCACNATCCATTATTAGA
Length of connected seq. 1351
Full length Seq ID -
Full length Seq. -
Length of full length seq. -