CFC728 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

CFC728
Library	CF (Link to library)
Clone ID	CFC728 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U09897-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/CF/CFC7-B/CFC728Q.Seq.d/
Representative seq. ID	CFC728E (Link to Original site)
Representative DNA sequence	>CFC728 (CFC728Q) /CSM/CF/CFC7-B/CFC728Q.Seq.d/ AAAAAATTTTTTTTTTTATAATTNAAATTTAATTTATTGATTTTGTTGTTTTAAAAAGAA ATCTGCAATGAATCTTNTTTGAATTTTACCTGAAGCAGTTTTTGGGAAATTATCAGNGAT AATGATTTTNTTTGGCACTTTGAAAGAGATTAATTTNTTTTGGAGGAATTGGGNGATTTC TTCGACTGTAATTGATTGAGGTACTTTTGGGATGACGGCAGCCCAAATCTNTTCGCCATA CTTTTCATCTGGTNCACCAAAGCAAACAGCTTCGAGAATTTTATCATTTTCCAAGAGAGC ATTATCAACTTCCAATGGGGAGATTTTCTCACCACCTNTATTGATGATTTCCTTCTTTCT ACCCTTGANAATCAAGTAGCCGTCTTGATCTAAATAACCGATATCACCAGNGAGGAACCA ACCATCCTTTGTAAAGTTATCAATGTTTGCTTGGGGATTATTATGATAACCATGCATANC ATTCTTGCCCTTGATACAAACTTCACCTACATCACCTTGTTTTTGATGCTCGCCATTGTC ATTGACAATACTAATTTGAACATTGAATCCCTTACCGACGCTACCAGGCTTTCTTGGACC GTCTTGTGGCAATGGGTTCGATGCCATTTGGTGGGAAGCCTCTGTCATACCGTAGGACTC AATTACTGGACAGCCAAAGAATTGCTCCAATGTCTCTAATAAAGTTGGTGATAATGATGA CGACGATGATCTAATGAATCTAAGTAACCCTTTGTTGGAAGAGGATGCAGAGGATGTGGC CGATTGCTCGACGTTGCAAAGAATTGTATGAATTGTAGGTACGGCACTATACCAATTTAC AGAGAATTGTTTAACTTGGCTCCAAAATACACTTGCAGAGAATCTTGGTGGCACAACTAA ACTAGCACCAGCATTGAATGTTGATAAACAAACACCAATTAAACCATGAACGTGGAATAA TGGCATGACTACATATGAGCAATCGGATGGGGTTAAATGGAATGTTGAGGAAATGTTTGC ACTTGAGGTTGCCAAATTTTCATGAGTCAATGGTACACCCTTTGGTCTGCCAGTGCTACC ACTAGTATGCAAAAACAATGCTTTGTCATCTTTATCTGGAACAGTCTCCAATTTAATTTT ATCACCTTCATCCTCTCCTGAAATTGTTTCACTTGAGAAAATCAAGTCATCTCCATTGCT TGGATCTGTAATTCTATAATAAAGTTTACCTTCCTTTTCATTTTC
sequence update	2001. 6. 9
Translated Amino Acid sequence	kkffflxkfnllillfkeicnesxlnftssfweiixdndfxwhferdfxleelgdf fdcnlryfwddgspnlfailfiwxtkansfenfiifqesiinfqwgdflttxiddflls tlxnqvavliITDITXEEPTILCKVINVCLGIIMITMHXILALDTNFTYITLFLMLAIV IDNTNLNIESLTDATRLSWTVLWQWVRCHLVGSLCHTVGLNYWTAKELLQCLsw** rrsneskpfvgrgcrgcgrlldvakncmncrygtipiyrelfnlapkytcreswwhn* tstsiec*tntntmnvewhdyiaigwgmecgnvctgcqifmsqwytlwsasat tsmqkqcfvifiwnslqfnfitfilsncft*enqvisiawicnsiikftflfif
Translated Amino Acid sequence (All Frames)	Frame A: kkffflxkfnllillfkeicnesxlnftssfweiixdndfxwhferdfxleelgdf fdcnlryfwddgspnlfailfiwxtkansfenfiifqesiinfqwgdflttxiddflls tlxnqvavliITDITXEEPTILCKVINVCLGIIMITMHXILALDTNFTYITLFLMLAIV IDNTNLNIESLTDATRLSWTVLWQWVRCHLVGSLCHTVGLNYWTAKELLQCLsw** rrsneskpfvgrgcrgcgrlldvakncmncrygtipiyrelfnlapkytcreswwhn* tstsiec*tntntmnvewhdyiaigwgmecgnvctgcqifmsqwytlwsasat tsmqkqcfvifiwnslqfnfitfilsncftenqvisiawicnsiikftflfif Frame B: knfffynxnliyfccfkkksamnlxilpeavfgklsximixfgtlkeinxfwrnwxis stvidgtfgmtaaqixspyfssgxpkqtasrilsfskralstsngeifsppxlmisffl plxikpsskpispxrnqpsfvklsmfawgllpcixflpliqtsptspcfcspls ltilitlnplptlpgflgpscgngfdaiwweasvipdsitgqpkncsnvsnkvgdndd dddlmnlsnplleedaedvadcstlqrivivgtalyqftencltwlqntlaenlggttk lapalnvdkqtpikptwnngmttyeqsdgvkwnveemfalevakfsvngtpfglpvlp lvcknnalsslsgtvsnlilspssspeivslekiksspllgsvilslpsfsf Frame C: kifffiixifidfvvlkrnlqixfefylkqflgnyqxfxlalkrlixfggigxfl rllievllgrqpksxrhtfhlvhqskqlrefyhfprehyqlpmgrfshhly*fpsfy pxsssrldlnnryhqxgtnhplsyqcllgdyydnhaxhscpyklhlhhlvfdarhch qyfehipyrryqafldrlvamgsmpfggkplsyrrtqlldsqriapmsliklvimmt tmiivtlcwkrmqrmwpiarrckelyelvrhytnlqrivlgskihlqrilvaqln hqhmlinkhqlnhergimalhmsnrmglngmlrkclhlrlpnfhesmvhplvcqcyh yaktmlchlyleqspifyhlhpllklfhlrksshlhcldlfynkvylpfhf
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value CFC728 (CFC728Q) /CSM/CF/CFC7-B/CFC728Q.Seq.d/ 2363 0.0 CFH325 (CFH325Q) /CSM/CF/CFH3-B/CFH325Q.Seq.d/ 1392 0.0 CFI563 (CFI563Q) /CSM/CF/CFI5-C/CFI563Q.Seq.d/ 1364 0.0 VFF556 (VFF556Q) /CSM/VF/VFF5-C/VFF556Q.Seq.d/ 1354 0.0 SFG669 (SFG669Q) /CSM/SF/SFG6-C/SFG669Q.Seq.d/ 1354 0.0 AFO765 (AFO765Q) /CSM/AF/AFO7-C/AFO765Q.Seq.d/ 1346 0.0 AFG820 (AFG820Q) /CSM/AF/AFG8-A/AFG820Q.Seq.d/ 1316 0.0 SFG489 (SFG489Q) /CSM/SF/SFG4-D/SFG489Q.Seq.d/ 1314 0.0 SFI837 (SFI837Q) /CSM/SF/SFI8-B/SFI837Q.Seq.d/ 1298 0.0 CFA512 (CFA512Q) /CSM/CF/CFA5-A/CFA512Q.Seq.d/ 1261 0.0
own update	2003.10.29
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N BZ298692\|BZ298692.1 CG4529.r1 Candida glabrata Random Genomic Library Candida glabratagenomic clone CG4529, genomic survey sequence. 66 1e-06 1 AC116982\|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence. 42 0.002 13 AC073776\|AC073776.1 Mus musculus clone RP23-384C11, WORKING DRAFT SEQUENCE, 18 unordered pieces. 44 0.012 6 AC117176\|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence. 32 0.15 12 AC010058\|AC010058.7 Drosophila melanogaster 3L BAC RP98-26L14 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence. 34 0.19 9 AL844509\|AL844509.1 Plasmodium falciparum chromosome 13. 36 0.22 24 AZ926033\|AZ926033.1 476.dio40a01.s1 Saccharomyces castellii NRRL Y-12630 Saccharomyces castellii genomic clone 476.dio40a01.s1, DNA sequence. 48 0.31 1 AC147427\|AC147427.2 Oryza sativa chromosome 3 BAC clone B1394A07, complete sequence. 34 0.40 11 AC093282\|AC093282.1 Homo sapiens chromosome 5 clone RP11-414J21, WORKING DRAFT SEQUENCE, 4 unordered pieces. 38 0.94 6 CG114730\|CG114730.1 PUFSA55TB ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa0720I13, genomic survey sequence. 46 1.2 1
dna update	2004. 3. 2
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value EF676481_1(EF676481\|pid:none) Picea sitchensis clone WS02739_F21... 337 5e-91 AF354454_1(AF354454\|pid:none) Capsicum annuum putative acyl-CoA ... 335 2e-90 CR380957_291(CR380957\|pid:none) Candida glabrata strain CBS138 c... 332 2e-89 AP007157_804(AP007157\|pid:none) Aspergillus oryzae RIB40 genomic... 331 4e-89 CR382131_531(CR382131\|pid:none) Yarrowia lipolytica strain CLIB1... 330 5e-89 AE016814_356(AE016814\|pid:none) Ashbya gossypii (= Eremothecium ... 330 6e-89 (O74976) RecName: Full=Putative peroxisomal-coenzyme A synthetas... 327 4e-88 (P38137) RecName: Full=Peroxisomal-coenzyme A synthetase; ... 322 1e-86 AM270070_4(AM270070\|pid:none) Aspergillus niger contig An04c0090... 321 3e-86 AL606651_2(AL606651\|pid:none) Oryza sativa genomic DNA, chromoso... 317 4e-85
protein update	2009. 6.30
PSORT	psg: 0.75 gvh: 0.51 alm: 0.25 top: 0.57 tms: 0.07 mit: 0.26 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.05 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 1.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 0.00 48.0 %: nuclear 28.0 %: cytoplasmic 12.0 %: mitochondrial 8.0 %: Golgi 4.0 %: vesicles of secretory system >> prediction for CFC728 is nuc
5' end seq. ID	CFC728F
5' end seq.	>CFC728F.Seq AAAAAATTTTTTTTTTTATAATTNAAATTTAATTTATTGATTTTGTTGTTTTAAAAAGAA ATCTGCAATGAATCTTNTTTGAATTTTACCTGAAGCAGTTTTTGGGAAATTATCAGNGAT AATGATTTTNTTTGGCACTTTGAAAGAGATTAATTTNTTTTGGAGGAATTGGGNGATTTC TTCGACTGTAATTGATTGAGGTACTTTTGGGATGACGGCAGCCCAAATCTNTTCGCCATA CTTTTCATCTGGTNCACCAAAGCAAACAGCTTCGAGAATTTTATCATTTTCCAAGAGAGC ATTATCAACTTCCAATGGGGAGATTTTCTCACCACCTNTATTGATGATTTCCTTCTTTCT ACCCTTGANAATCAAGTAGCCGTCTTGATCTAAATAACCGATATCACCAGNGAGGAACCA ACCATCCTTTGTAAAGTTATCAATGTTTGCTTGGGGATTATTATGATAACCATGCATAAC ATTCTTGCCCTTGATACAAACTTCACCTACATCACCTTGTTTTTGATGCTCGCCATTGTC ATTGACAATACTAATTTGAACATTGAATCCCTTACCGACGCTACCAGGCTTTCTTG---- ------
Length of 5' end seq.	596
3' end seq. ID	CFC728Z
3' end seq.	>CFC728Z.Seq ----------AACCATGCATACCATTCTTGCCCTTGATACAAACTTCACCTACATCACCT TGTTTTTGATGCTCGCCATTGTCATTGACAATACTAATTTGAACATTGAATCCCTTACCG ACGCTACCAGGCTTTCTTGGACCGTCTTGTGGCAATGGGTTCGATGCCATTTGGTGGGAA GCCTCTGTCATACCGTAGGACTCAATTACTGGACAGCCAAAGAATTGCTCCAATGTCTCT AATAAAGTTGGTGATAATGATGACGACGATGATCTAATGAATCTAAGTAACCCTTTGTTG GAAGAGGATGCAGAGGATGTGGCCGATTGCTCGACGTTGCAAAGAATTGTATGAATTGTA GGTACGGCACTATACCAATTTACAGAGAATTGTTTAACTTGGCTCCAAAATACACTTGCA GAGAATCTTGGTGGCACAACTAAACTAGCACCAGCATTGAATGTTGATAAACAAACACCA ATTAAACCATGAACGTGGAATAATGGCATGACTACATATGAGCAATCGGATGGGGTTAAA TGGAATGTTGAGGAAATGTTTGCACTTGAGGTTGCCAAATTTTCATGAGTCAATGGTACA CCCTTTGGTCTGCCAGTGCTACCACTAGTATGCAAAAACAATGCTTTGTCATCTTTATCT GGAACAGTCTCCAATTTAATTTTATCACCTTCATCCTCTCCTGAAATTGTTTCACTTGAG AAAATCAAGTCATCTCCATTGCTTGGATCTGTAATTCTATAATAAAGTTTACCTTCCTTT TCATTTTC
Length of 3' end seq.	778
Connected seq. ID	CFC728P
Connected seq.	>CFC728P.Seq AAAAAATTTTTTTTTTTATAATTNAAATTTAATTTATTGATTTTGTTGTTTTAAAAAGAA ATCTGCAATGAATCTTNTTTGAATTTTACCTGAAGCAGTTTTTGGGAAATTATCAGNGAT AATGATTTTNTTTGGCACTTTGAAAGAGATTAATTTNTTTTGGAGGAATTGGGNGATTTC TTCGACTGTAATTGATTGAGGTACTTTTGGGATGACGGCAGCCCAAATCTNTTCGCCATA CTTTTCATCTGGTNCACCAAAGCAAACAGCTTCGAGAATTTTATCATTTTCCAAGAGAGC ATTATCAACTTCCAATGGGGAGATTTTCTCACCACCTNTATTGATGATTTCCTTCTTTCT ACCCTTGANAATCAAGTAGCCGTCTTGATCTAAATAACCGATATCACCAGNGAGGAACCA ACCATCCTTTGTAAAGTTATCAATGTTTGCTTGGGGATTATTATGATAACCATGCATAAC ATTCTTGCCCTTGATACAAACTTCACCTACATCACCTTGTTTTTGATGCTCGCCATTGTC ATTGACAATACTAATTTGAACATTGAATCCCTTACCGACGCTACCAGGCTTTCTTG---- ------AACCATGCATACCATTCTTGCCCTTGATACAAACTTCACCTACATCACCTTGTT TTTGATGCTCGCCATTGTCATTGACAATACTAATTTGAACATTGAATCCCTTACCGACGC TACCAGGCTTTCTTGGACCGTCTTGTGGCAATGGGTTCGATGCCATTTGGTGGGAAGCCT CTGTCATACCGTAGGACTCAATTACTGGACAGCCAAAGAATTGCTCCAATGTCTCTAATA AAGTTGGTGATAATGATGACGACGATGATCTAATGAATCTAAGTAACCCTTTGTTGGAAG AGGATGCAGAGGATGTGGCCGATTGCTCGACGTTGCAAAGAATTGTATGAATTGTAGGTA CGGCACTATACCAATTTACAGAGAATTGTTTAACTTGGCTCCAAAATACACTTGCAGAGA ATCTTGGTGGCACAACTAAACTAGCACCAGCATTGAATGTTGATAAACAAACACCAATTA AACCATGAACGTGGAATAATGGCATGACTACATATGAGCAATCGGATGGGGTTAAATGGA ATGTTGAGGAAATGTTTGCACTTGAGGTTGCCAAATTTTCATGAGTCAATGGTACACCCT TTGGTCTGCCAGTGCTACCACTAGTATGCAAAAACAATGCTTTGTCATCTTTATCTGGAA CAGTCTCCAATTTAATTTTATCACCTTCATCCTCTCCTGAAATTGTTTCACTTGAGAAAA TCAAGTCATCTCCATTGCTTGGATCTGTAATTCTATAATAAAGTTTACCTTCCTTTTCAT TTTC
Length of connected seq.	1374
Full length Seq ID	CFC728E
Full length Seq.	>CFC728E.Seq AAAAAATTTTTTTTTTTATAATTNAAATTTAATTTATTGATTTTGTTGTTTTAAAAAGAA ATCTGCAATGAATCTTNTTTGAATTTTACCTGAAGCAGTTTTTGGGAAATTATCAGNGAT AATGATTTTNTTTGGCACTTTGAAAGAGATTAATTTNTTTTGGAGGAATTGGGNGATTTC TTCGACTGTAATTGATTGAGGTACTTTTGGGATGACGGCAGCCCAAATCTNTTCGCCATA CTTTTCATCTGGTNCACCAAAGCAAACAGCTTCGAGAATTTTATCATTTTCCAAGAGAGC ATTATCAACTTCCAATGGGGAGATTTTCTCACCACCTNTATTGATGATTTCCTTCTTTCT ACCCTTGANAATCAAGTAGCCGTCTTGATCTAAATAACCGATATCACCAGNGAGGAACCA ACCATCCTTTGTAAAGTTATCAATGTTTGCTTGGGGATTATTATGATAACCATGCATANC ATTCTTGCCCTTGATACAAACTTCACCTACATCACCTTGTTTTTGATGCTCGCCATTGTC ATTGACAATACTAATTTGAACATTGAATCCCTTACCGACGCTACCAGGCTTTCTTGGACC GTCTTGTGGCAATGGGTTCGATGCCATTTGGTGGGAAGCCTCTGTCATACCGTAGGACTC AATTACTGGACAGCCAAAGAATTGCTCCAATGTCTCTAATAAAGTTGGTGATAATGATGA CGACGATGATCTAATGAATCTAAGTAACCCTTTGTTGGAAGAGGATGCAGAGGATGTGGC CGATTGCTCGACGTTGCAAAGAATTGTATGAATTGTAGGTACGGCACTATACCAATTTAC AGAGAATTGTTTAACTTGGCTCCAAAATACACTTGCAGAGAATCTTGGTGGCACAACTAA ACTAGCACCAGCATTGAATGTTGATAAACAAACACCAATTAAACCATGAACGTGGAATAA TGGCATGACTACATATGAGCAATCGGATGGGGTTAAATGGAATGTTGAGGAAATGTTTGC ACTTGAGGTTGCCAAATTTTCATGAGTCAATGGTACACCCTTTGGTCTGCCAGTGCTACC ACTAGTATGCAAAAACAATGCTTTGTCATCTTTATCTGGAACAGTCTCCAATTTAATTTT ATCACCTTCATCCTCTCCTGAAATTGTTTCACTTGAGAAAATCAAGTCATCTCCATTGCT TGGATCTGTAATTCTATAATAAAGTTTACCTTCCTTTTCATTTTC
Length of full length seq.	1245

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas