CFC719
Library CF
(Link to library)
Clone ID CFC719
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15887-1
Original site URL
Representative seq. ID CFC719P
(Link to Original site)
Representative DNA sequence
>CFC719 (CFC719Q) /CSM/CF/CFC7-A/CFC719Q.Seq.d/
ATAGTGAATTAGATATTTATTTTTATATATACATAAAATTTTGTATATACTCAATATTTA
AAATATGGCCGCATCAGCTATATTTTTAATGGACTCAAAGGGTAAAGTTCTAATCTCACG
TAACTATCGTGGTGATGTTCCAATGAGTGTTGCATCAAAATTTATATCAAAAATTTTAGA
AGAAGAAGATCTCAACTTAAAACCAATCATCCAAGAAGATGGTATCTCTTATATTTATGT
TAAACATAATAATTTATTTTTATTGGCAACAACAGAAAGAAATGCAAATGCGGCAACAAT
ATTATTATTTTTATATAAAATGATTGAAGTTTTTAATGAATACTTTAAAGAATTAGAAGA
AGAGAGTATTAGGGATAACTTTGTAGTAATTTATGAATTGATGGATGAAATGATGGATTT
TGGATATCCACAATCTACAGAGCCAAAGATTCTTCAAGAATATATTACTCAAGAAGGTTA
TAAATTAGAGAGAGGTGCAAGAGGTATGGTATTACCAGCAGCAATTACAGGTGCAGTCTC
TTGGAGAAAAGAAGGTATTAAATATAATAAGAATGAAGTATTTTTAGATGTTGTCGAATC
AATCAATCTTTTAGTTTXXXXXXXXXXCTGGGGACNNTANGNTTGNTTAAANGGGGANTA
NCNGNTTAAAACNTCNTAAAAAAAAAAAATAAAAATAAAAAAAAAAAATAAAAAAATAAA
AAAGGTATAATAAAATTAAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence
**irylflyihkilyilni*NMAASAIFLMDSKGKVLISRNYRGDVPMSVASKFISKILE
EEDLNLKPIIQEDGISYIYVKHNNLFLLATTERNANAATILLFLYKMIEVFNEYFKELEE
ESIRDNFVVIYELMDEMMDFGYPQSTEPKILQEYITQEGYKLERGARGMVLPAAITGAVS
WRKEGIKYNKNEVFLDVVESINLLV---

---WGXXXXLXGXXXXKTS*kkkikikkknkkikkv**n*


Translated Amino Acid sequence (All Frames)
Frame A:
ivn*ififiyt*nfvytqylkygrisyifnglkg*ssnlt*lsw*csneccikiyiknfr
rrrsqlktnhprrwyllylc*t**fifignnrkkckcgnniiifi*nd*sf**il*rirr
rey*g*lcsnl*idg*ndgfwistiyrakdssriyysrrl*irerckrygitssnyrcsl
lekrry*i**e*sifrccrinqsfs---

---lgtxxlxkxgxxx*nxxkkknknkkkk*knkkgiiklk

Frame B:
**irylflyihkilyilni*NMAASAIFLMDSKGKVLISRNYRGDVPMSVASKFISKILE
EEDLNLKPIIQEDGISYIYVKHNNLFLLATTERNANAATILLFLYKMIEVFNEYFKELEE
ESIRDNFVVIYELMDEMMDFGYPQSTEPKILQEYITQEGYKLERGARGMVLPAAITGAVS
WRKEGIKYNKNEVFLDVVESINLLV---

---WGXXXXLXGXXXXKTS*kkkikikkknkkikkv**n*

Frame C:
seldiyfyiyikfciysifkiwphqlyf*wtqrvkf*shvtivvmfq*vlhqnlyqkf*k
kkist*nqsskkmvslifmlniiiyfywqqqkemqmrqqyyyfyik*lkflmntlkn*kk
rvlgitl**fmn*wmk*wildihnlqsqrffknillkkvin*revqevwyyqqqlqvqsl
gekkvlniirmkyf*mlsnqsif*f---

---gdxxxx*xgxxxlkxxkkkk*k*kkkikk*krynkik

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFC719 (CFC719Q) /CSM/CF/CFC7-A/CFC719Q.Seq.d/ 1223 0.0
VFA691 (VFA691Q) /CSM/VF/VFA6-D/VFA691Q.Seq.d/ 1207 0.0
AFH138 (AFH138Q) /CSM/AF/AFH1-B/AFH138Q.Seq.d/ 1205 0.0
AFL222 (AFL222Q) /CSM/AF/AFL2-A/AFL222Q.Seq.d/ 1197 0.0
AFK482 (AFK482Q) /CSM/AF/AFK4-D/AFK482Q.Seq.d/ 1195 0.0
CFJ752 (CFJ752Q) /CSM/CF/CFJ7-C/CFJ752Q.Seq.d/ 1185 0.0
SFF503 (SFF503Q) /CSM/SF/SFF5-A/SFF503Q.Seq.d/ 1074 0.0
CHB859 (CHB859Q) /CSM/CH/CHB8-C/CHB859Q.Seq.d/ 1072 0.0
AFK570 (AFK570Q) /CSM/AF/AFK5-C/AFK570Q.Seq.d/ 977 0.0
VFO742 (VFO742Q) /CSM/VF/VFO7-B/VFO742Q.Seq.d/ 946 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AY007278|AY007278.1 Dictyostelium discoideum clathrin-adaptor medium chain apm 1 mRNA, complete cds. 1072 0.0 1
CB887101|CB887101.1 Lice_02_D20_T3 Body louse cDNA library Pediculus humanus cDNA, mRNA sequence. 54 1e-18 3
AW589006|AW589006.1 kp17d03.y1 TBN95TM-SSFH Strongyloides stercoralis cDNA 5' similar to SW:AP47_MOUSE P35585 CLATHRIN COAT ASSEMBLY PROTEIN AP47 ;, mRNA sequence. 58 3e-18 3
AL844509|AL844509.1 Plasmodium falciparum chromosome 13. 50 6e-15 16
BM901123|BM901123.1 rc45c08.y1 Meloidogyne hapla egg pAMP1 v1 Meloidogyne hapla cDNA 5' similar to SW:AP47_CAEEL P35602 CLATHRIN COAT ASSEMBLY PROTEIN AP47 ;, mRNA sequence. 54 7e-15 3
AL049181|AL049181.4 Plasmodium falciparum DNA *** SEQUENCING IN PROGRESS *** from MAL13P4. 50 1e-13 18
AF250284|AF250284.1 Amsacta moorei entomopoxvirus, complete genome. 40 2e-13 19
BP190985|BP190985.1 Dugesia japonica cDNA, clone: 05948_HH, expressed in the head. 88 2e-13 1
AE014820|AE014820.1 Plasmodium falciparum 3D7 chromosome 14 section 5 of 13 of the complete sequence. 42 4e-13 19
AL651331|AL651331.2 Xenopus tropicalis EST, clone TGas039p22 5'. 54 2e-12 4
dna update 2004. 5.29
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54HS9) RecName: Full=AP-1 complex subunit mu; AltName: Full=Ad... 360 2e-98
AY007278_1(AY007278|pid:none) Dictyostelium discoideum clathrin-... 356 5e-97
CU633446_75(CU633446|pid:none) Podospora anserina genomic DNA ch... 247 3e-64
BT045097_1(BT045097|pid:none) Salmo salar clone ssal-rgf-511-340... 242 7e-63
AM920437_1424(AM920437|pid:none) Penicillium chrysogenum Wiscons... 241 1e-62
AM270126_42(AM270126|pid:none) Aspergillus niger contig An07c008... 241 1e-62
AJ719417_1(AJ719417|pid:none) Gallus gallus mRNA for hypothetica... 241 1e-62
AK027528_1(AK027528|pid:none) Homo sapiens cDNA FLJ14622 fis, cl... 241 2e-62
BC105477_1(BC105477|pid:none) Bos taurus similar to adaptor-rela... 241 2e-62
BC097533_1(BC097533|pid:none) Xenopus laevis hypothetical protei... 241 2e-62
protein update 2009. 5.12
PSORT

psg: 0.75 gvh: 0.42 alm: 0.38 top: 0.53 tms: 0.00 mit: 0.25 mip: 0.05
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: nuclear
36.0 %: cytoplasmic
16.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: peroxisomal

>> prediction for CFC719 is nuc

5' end seq. ID CFC719F
5' end seq.
>CFC719F.Seq
ATAGTGAATTAGATATTTATTTTTATATATACATAAAATTTTGTATATACTCAATATTTA
AAATATGGCCGCATCAGCTATATTTTTAATGGACTCAAAGGGTAAAGTTCTAATCTCACG
TAACTATCGTGGTGATGTTCCAATGAGTGTTGCATCAAAATTTATATCAAAAATTTTAGA
AGAAGAAGATCTCAACTTAAAACCAATCATCCAAGAAGATGGTATCTCTTATATTTATGT
TAAACATAATAATTTATTTTTATTGGCAACAACAGAAAGAAATGCAAATGCGGCAACAAT
ATTATTATTTTTATATAAAATGATTGAAGTTTTTAATGAATACTTTAAAGAATTAGAAGA
AGAGAGTATTAGGGATAACTTTGTAGTAATTTATGAATTGATGGATGAAATGATGGATTT
TGGATATCCACAATCTACAGAGCCAAAGATTCTTCAAGAATATATTACTCAAGAAGGTTA
TAAATTAGAGAGAGGTGCAAGAGGTATGGTATTACCAGCAGCAATTACAGGTGCAGTCTC
TTGGAGAAAAGAAGGTATTAAATATAATAAGAATGAAGTATTTTTAGATGTTGTCGAATC
AATCAATCTTTTAGTTT----------
Length of 5' end seq. 617
3' end seq. ID CFC719Z
3' end seq.
>CFC719Z.Seq
----------CTGGGGACNNTANGNTTGNTTAAANGGGGANTANCNGNTTAAAACNTCNT
AAAAAAAAAAAATAAAAATAAAAAAAAAAAATAAAAAAATAAAAAAGGTATAATAAAATT
AAAA
Length of 3' end seq. 114
Connected seq. ID CFC719P
Connected seq.
>CFC719P.Seq
ATAGTGAATTAGATATTTATTTTTATATATACATAAAATTTTGTATATACTCAATATTTA
AAATATGGCCGCATCAGCTATATTTTTAATGGACTCAAAGGGTAAAGTTCTAATCTCACG
TAACTATCGTGGTGATGTTCCAATGAGTGTTGCATCAAAATTTATATCAAAAATTTTAGA
AGAAGAAGATCTCAACTTAAAACCAATCATCCAAGAAGATGGTATCTCTTATATTTATGT
TAAACATAATAATTTATTTTTATTGGCAACAACAGAAAGAAATGCAAATGCGGCAACAAT
ATTATTATTTTTATATAAAATGATTGAAGTTTTTAATGAATACTTTAAAGAATTAGAAGA
AGAGAGTATTAGGGATAACTTTGTAGTAATTTATGAATTGATGGATGAAATGATGGATTT
TGGATATCCACAATCTACAGAGCCAAAGATTCTTCAAGAATATATTACTCAAGAAGGTTA
TAAATTAGAGAGAGGTGCAAGAGGTATGGTATTACCAGCAGCAATTACAGGTGCAGTCTC
TTGGAGAAAAGAAGGTATTAAATATAATAAGAATGAAGTATTTTTAGATGTTGTCGAATC
AATCAATCTTTTAGTTT----------CTGGGGACNNTANGNTTGNTTAAANGGGGANTA
NCNGNTTAAAACNTCNTAAAAAAAAAAAATAAAAATAAAAAAAAAAAATAAAAAAATAAA
AAAGGTATAATAAAATTAAAA
Length of connected seq. 731
Full length Seq ID -
Full length Seq. -
Length of full length seq. -