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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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CFC683
Library CF
(Link to library)
Clone ID CFC683
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16381-1
Original site URL
Representative seq. ID CFC683P
(Link to Original site)
Representative DNA sequence 
>CFC683 (CFC683Q) /CSM/CF/CFC6-D/CFC683Q.Seq.d/
ATTCAAAAAAAAAAATATTAAATCNTTGTAGTATTTTGTTCATATTCAAATTAAATATCA
ATNCAATTAAAAAANGTTAAAATTAAATTTGTAAAATCAATTTGTANCAAAANCTAGTAN
TTTAAAAAAAAAAAAACCAAAAAAAAAAXXXXXXXXXXTGGCCTANTGGNTTCAAAAAAA
AAAATATTAAATCANTGTAGTATTTTGTTCATATTCNAATTAAATATCAATACAATTAAA
AAAAGTTANAATTAAATTGTAAAATCAAT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
fkkkniksl*yfvhiqikyqxn*kxlklnl*NQFVXKXSXLKKKKPKKK---

---GLXXSKKKILNXCSILFIFXLNINTIKKSXN*ivks
Translated Amino Acid sequence (All Frames) 
Frame A:
iqkkky*ixvvfcsysn*isxqlkxvkikfvksicxkx*xfkkkktkkk---

---wpxgfkkkniksx*yfvhixikyqyn*kklxlnckin

Frame B:
fkkkniksl*yfvhiqikyqxn*kxlklnl*NQFVXKXSXLKKKKPKKK---

---GLXXSKKKILNXCSILFIFXLNINTIKKSXN*ivks

Frame C:
skkkilnxcsilfifklninxikkx*n*ickinlxqxlvx*kkknqkk---

---axwxqkkky*ixvvfcsysn*isiqlkkvxikl*nq
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFC683 (CFC683Q) /CSM/CF/CFC6-D/CFC683Q.Seq.d/                        109   2e-23
SLF326 (SLF326Q) /CSM/SL/SLF3-B/SLF326Q.Seq.d/                         96   3e-19
SHA483 (SHA483Q) /CSM/SH/SHA4-D/SHA483Q.Seq.d/                         96   3e-19
SFJ803 (SFJ803Q) /CSM/SF/SFJ8-A/SFJ803Q.Seq.d/                         96   3e-19
SFJ435 (SFJ435Q) /CSM/SF/SFJ4-B/SFJ435Q.Seq.d/                         96   3e-19
SFI660 (SFI660Q) /CSM/SF/SFI6-C/SFI660Q.Seq.d/                         96   3e-19
SFE832 (SFE832Q) /CSM/SF/SFE8-B/SFE832Q.Seq.d/                         96   3e-19
SFE258 (SFE258Q) /CSM/SF/SFE2-C/SFE258Q.Seq.d/                         96   3e-19
SFD210 (SFD210Q) /CSM/SF/SFD2-A/SFD210Q.Seq.d/                         96   3e-19
SFA760 (SFA760Q) /CSM/SF/SFA7-C/SFA760Q.Seq.d/                         96   3e-19
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X51892|X51892.1 Dictyostelium discoideum SP60 gene for spore coat protein.    94   5e-16  2
M34546|M34546.1 D.discoideum spore coat 60 (sp60) gene, 5' flank.    94   1e-15  1
X52105|X52105.1 Dictyostelium discoideum SP60 gene for spore coat protein.    86   1e-13  2
BX221036|BX221036.1 Danio rerio genomic clone DKEY-47G20, genomic survey sequence.    34   0.23   2
AC132843|AC132843.5 Mus musculus chromosome 9 clone RP24-532D12 map 9, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    30   1.9    2
AC132152|AC132152.3 Homo sapiens BAC clone CTD-2014D7 from 2, complete sequence.    30   7.0    2
AC108023|AC108023.3 Homo sapiens BAC clone RP11-14P22 from 2, complete sequence.    30   7.5    2
BX571707|BX571707.11 Zebrafish DNA sequence from clone DKEY-93K4 in linkage group 14.    40   16     1
AB079868|AB079868.1 Bombyx mori Bmmiple gene for Pleiotrophin-like protein, complete cds.    40   16     1
AB063521|AB063521.2 Wigglesworthia brevipalpis DNA, complete genome, section 1/2.    40   16     1
dna update 2004. 5.29
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 213,684,876
protein update 2009. 5.12
PSORT 

 psg: 0.22  gvh: 0.45  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.45  mip: 0.00
 nuc: 0.47  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 72.0 %: nuclear
	 24.0 %: cytoplasmic
	  4.0 %: mitochondrial

>> prediction for CFC683 is nuc
5' end seq. ID CFC683F
5' end seq. 
>CFC683F.Seq
ATTCAAAAAAAAAAATATTAAATCNTTGTAGTATTTTGTTCATATTCAAATTAAATATCA
ATNCAATTAAAAAANGTTAAAATTAAATTTGTAAAATCAATTTGTANCAAAANCTAGTAN
TTTAAAAAAAAAAAAACCAAAAAAAAAA----------
Length of 5' end seq. 148
3' end seq. ID CFC683Z
3' end seq. 
>CFC683Z.Seq
----------TGGCCTANTGGNTTCAAAAAAAAAAATATTAAATCANTGTAGTATTTTGT
TCATATTCNAATTAAATATCAATACAATTAAAAAAAGTTANAATTAAATTGTAAAATCAA
T
Length of 3' end seq. 111
Connected seq. ID CFC683P
Connected seq. 
>CFC683P.Seq
ATTCAAAAAAAAAAATATTAAATCNTTGTAGTATTTTGTTCATATTCAAATTAAATATCA
ATNCAATTAAAAAANGTTAAAATTAAATTTGTAAAATCAATTTGTANCAAAANCTAGTAN
TTTAAAAAAAAAAAAACCAAAAAAAAAA----------TGGCCTANTGGNTTCAAAAAAA
AAAATATTAAATCANTGTAGTATTTTGTTCATATTCNAATTAAATATCAATACAATTAAA
AAAAGTTANAATTAAATTGTAAAATCAAT
Length of connected seq. 259
Full length Seq ID -
Full length Seq. -
Length of full length seq. -