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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFC679
Library CF
(Link to library)
Clone ID CFC679
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16560-1
Original site URL
Representative seq. ID CFC679P
(Link to Original site)
Representative DNA sequence 
>CFC679 (CFC679Q) /CSM/CF/CFC6-D/CFC679Q.Seq.d/
AAATTCTTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATATATTGTAACAT
TTCATAAAAAAAAAAAAAAAAAAAAAAAAATTTAAAAAANCCCCTTTTTNGAAAAAAAAA
AXXXXXXXXXXGTATGCAATTNTTGTAAAGACCCTCCCCGGGTAANATTATTACATTTNA
AGTTNAAGGTAGTGACAACCTTNAGAATGTAAAANCAAANATTCAAGATAAGAAGGTNTT
CCACCAGATCAACAACGTATCATTTTCGCTGGTAANCAATTAGAAGATGGTCGTACTCTC
TCTGATTACAATATCCAAAAAGAATCAACTCTCCACTTGGTCCTCAGATTAAGAGGTGGT
ATGCAAATCTTTGTCAAAACATTAACTGGTAAGACCATCACTCTTGAAGTTGAGGGCTCA
GATAATATTGAAAATGTTAAAACAAAGATTCAAGACAAAGAAGGTATCCCACCAGACCAA
CAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAAC
ATTCAAAAGGAATCCNCTCTCCATTTAGTCCTCAGATTAAGAGGTGGTATGCAAATTTTT
GTCAAAACCCTCACTGGTAAGACTATTACACTCGAAGTTGAAGGTTCTGATAACATTGAG
AATGTTAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTCTCATT
TTCGCCGGTAAACAATTGGAGGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAA
TCCACTCTCCATTTAGTTCTCAGATTAAGAGGTGGTATGCAAATTTTTGTAAAAACTCTC
ACTGGTAAAACCATTACACTCGAAGTTGAAGGTAGTGACAACATTGAGAATGTAAAAACA
AAAATTCAAGACAAAGAAGGTATTCCA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
kffllyky*ihilffyil*HFIKKKKKKKKFKKXPFXKKK---

---VCNXCKDPPRVXLLHXKXKVVTTXRM*xqxfkirrxstrsttyhfrw*xirrwsysl
*lqypkrinsplgpqikrwyanlcqninw*dhhs*s*glr*y*kc*nkdsrqrryptrpt
kinfrw*tirrwsysl*lqhskgixspfspqikrwyanfcqnphw*dyytrs*rf**h*e
c*sqnprqrrystrsttshfrr*tiggwsysl*lqhskgihspfssqikrwyanfcknsh
w*nhytrs*r**qh*ecknknsrqrrys
Translated Amino Acid sequence (All Frames) 
Frame A:
kffllyky*ihilffyil*HFIKKKKKKKKFKKXPFXKKK---

---VCNXCKDPPRVXLLHXKXKVVTTXRM*xqxfkirrxstrsttyhfrw*xirrwsysl
*lqypkrinsplgpqikrwyanlcqninw*dhhs*s*glr*y*kc*nkdsrqrryptrpt
kinfrw*tirrwsysl*lqhskgixspfspqikrwyanfcqnphw*dyytrs*rf**h*e
c*sqnprqrrystrsttshfrr*tiggwsysl*lqhskgihspfssqikrwyanfcknsh
w*nhytrs*r**qh*ecknknsrqrrys

Frame B:
nsfyytnikfifyffiycnis*kkkkkkknlkxplfxkkk---

---yaixvktlpg*xyyixsxr**qpxeckxkxsr*egxppdqqriifagxqledgrtls
dyniqkestlhlvlrlrggmqifvktltgktitlevegsdnienvktkiqdkegippdqq
rlifagkqledgrtlsdyniqkesxlhlvlrlrggmqifvktltgktitlevegsdnien
vkakiqdkegippdqqrlifagkqledgrtlsdyniqkestlhlvlrlrggmqifvktlt
gktitlevegsdnienvktkiqdkegip

Frame C:
ilfiiqilnsyfiflyivtfhkkkkkkkki*kxpfxekk---

---mqxl*rpspgxiitfxvxgsdnlxnvkxxiqdkkvfhqinnvsfslvxn*kmvvlsl
itiskknqlstwssd*evvckslskh*lvrpsllklraqiilkmlkqrfktkkvshqtnk
d*fslvnn*kmvvlslittfkrnplsi*ssd*evvckflskpslvrllhsklkvlitlrm
lkpksktkkvfhqinnvsfspvnnwrmvvlslittfkrnplsi*fsd*evvckfl*klsl
vkplhsklkvvttlrm*kqkfktkkvf
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFC679 (CFC679Q) /CSM/CF/CFC6-D/CFC679Q.Seq.d/                       1518   0.0
CHB384 (CHB384Q) /CSM/CH/CHB3-D/CHB384Q.Seq.d/                       1425   0.0
SFG820 (SFG820Q) /CSM/SF/SFG8-A/SFG820Q.Seq.d/                       1421   0.0
SFE569 (SFE569Q) /CSM/SF/SFE5-C/SFE569Q.Seq.d/                       1417   0.0
CFG260 (CFG260Q) /CSM/CF/CFG2-C/CFG260Q.Seq.d/                       1415   0.0
CFI832 (CFI832Q) /CSM/CF/CFI8-B/CFI832Q.Seq.d/                       1407   0.0
AFM436 (AFM436Q) /CSM/AF/AFM4-B/AFM436Q.Seq.d/                       1398   0.0
CFI774 (CFI774Q) /CSM/CF/CFI7-D/CFI774Q.Seq.d/                       1396   0.0
AFF113 (AFF113Q) /CSM/AF/AFF1-A/AFF113Q.Seq.d/                       1396   0.0
SFI250 (SFI250Q) /CSM/SF/SFI2-C/SFI250Q.Seq.d/                       1394   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

M19491|M19491.1 Slime mold (D.discoideum) ubiquitin p229C/pLK229 gene, complete cds.  1342   0.0    3
M23748|M23748.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB19.  1326   0.0    3
M19666|M19666.1 Slime mold (D.discoideum) ubiquitin gene, 3' end, clone p229C.  1326   0.0    3
M23753|M23753.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB14.   791   0.0    4
M23754|M23754.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB2.   684   0.0    2
M23751|M23751.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB18.   670   0.0    3
M23752|M23752.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB17.   670   0.0    3
M19492|M19492.1 Slime mold (D.discoideum) ubiquitin lambda-229 gene, complete cds.   658   0.0    3
Z54197|Z54197.1 C.albicans UBI4 gene encoding polyubiquitin.      159   e-107  5
BJ528884|BJ528884.1 Oryzias latipes cDNA clone:MF01SSB034A18, 5' end single read.   186   e-104  4
dna update 2004. 5.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A27806(A27806) polyubiquitin 5 (clone pLK229) - slime mold (Dict...   447   e-124
M19666_1(M19666|pid:none) Slime mold (D.discoideum) ubiquitin ge...   447   e-124
B34080(B34080)polyubiquitin 5 (clone DCUB19) - slime mold (Dicty...   447   e-124
M23754_1(M23754|pid:none) D.discoideum ubiquitin mRNA, complete ...   444   e-123
AB021974_1(AB021974|pid:none) Bombyx mori UBI3 mRNA for polyubiq...   430   e-120
T16144(T16144) ubiquitin - Caenorhabditis elegans  &U23172_1(U23...   430   e-120
AY118702_1(AY118702|pid:none) Drosophila melanogaster AT20865 fu...   427   e-120
AB003731_1(AB003731|pid:none) Cricetulus griseus gene for polyub...   427   e-120
D17296_1(D17296|pid:none) Rattus norvegicus mRNA for polyubiquit...   427   e-120
AE014296_755(AE014296|pid:none) Drosophila melanogaster chromoso...   427   e-120
protein update 2009. 5.12
PSORT 

 psg: 0.56  gvh: 0.40  alm: 0.61  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.68  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 88.0 %: nuclear
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: cytoskeletal

>> prediction for CFC679 is nuc
5' end seq. ID CFC679F
5' end seq. 
>CFC679F.Seq
AAATTCTTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATATATTGTAACAT
TTCATAAAAAAAAAAAAAAAAAAAAAAAAATTTAAAAAANCCCCTTTTTNGAAAAAAAAA
A----------
Length of 5' end seq. 121
3' end seq. ID CFC679Z
3' end seq. 
>CFC679Z.Seq
----------GTATGCAATTNTTGTAAAGACCCTCCCCGGGTAANATTATTACATTTNAA
GTTNAAGGTAGTGACAACCTTNAGAATGTAAAANCAAANATTCAAGATAAGAAGGTNTTC
CACCAGATCAACAACGTATCATTTTCGCTGGTAANCAATTAGAAGATGGTCGTACTCTCT
CTGATTACAATATCCAAAAAGAATCAACTCTCCACTTGGTCCTCAGATTAAGAGGTGGTA
TGCAAATCTTTGTCAAAACATTAACTGGTAAGACCATCACTCTTGAAGTTGAGGGCTCAG
ATAATATTGAAAATGTTAAAACAAAGATTCAAGACAAAGAAGGTATCCCACCAGACCAAC
AAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAACA
TTCAAAAGGAATCCNCTCTCCATTTAGTCCTCAGATTAAGAGGTGGTATGCAAATTTTTG
TCAAAACCCTCACTGGTAAGACTATTACACTCGAAGTTGAAGGTTCTGATAACATTGAGA
ATGTTAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTCTCATTT
TCGCCGGTAAACAATTGGAGGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAAT
CCACTCTCCATTTAGTTCTCAGATTAAGAGGTGGTATGCAAATTTTTGTAAAAACTCTCA
CTGGTAAAACCATTACACTCGAAGTTGAAGGTAGTGACAACATTGAGAATGTAAAAACAA
AAATTCAAGACAAAGAAGGTATTCCA
Length of 3' end seq. 796
Connected seq. ID CFC679P
Connected seq. 
>CFC679P.Seq
AAATTCTTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATATATTGTAACAT
TTCATAAAAAAAAAAAAAAAAAAAAAAAAATTTAAAAAANCCCCTTTTTNGAAAAAAAAA
A----------GTATGCAATTNTTGTAAAGACCCTCCCCGGGTAANATTATTACATTTNA
AGTTNAAGGTAGTGACAACCTTNAGAATGTAAAANCAAANATTCAAGATAAGAAGGTNTT
CCACCAGATCAACAACGTATCATTTTCGCTGGTAANCAATTAGAAGATGGTCGTACTCTC
TCTGATTACAATATCCAAAAAGAATCAACTCTCCACTTGGTCCTCAGATTAAGAGGTGGT
ATGCAAATCTTTGTCAAAACATTAACTGGTAAGACCATCACTCTTGAAGTTGAGGGCTCA
GATAATATTGAAAATGTTAAAACAAAGATTCAAGACAAAGAAGGTATCCCACCAGACCAA
CAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAAC
ATTCAAAAGGAATCCNCTCTCCATTTAGTCCTCAGATTAAGAGGTGGTATGCAAATTTTT
GTCAAAACCCTCACTGGTAAGACTATTACACTCGAAGTTGAAGGTTCTGATAACATTGAG
AATGTTAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTCTCATT
TTCGCCGGTAAACAATTGGAGGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAA
TCCACTCTCCATTTAGTTCTCAGATTAAGAGGTGGTATGCAAATTTTTGTAAAAACTCTC
ACTGGTAAAACCATTACACTCGAAGTTGAAGGTAGTGACAACATTGAGAATGTAAAAACA
AAAATTCAAGACAAAGAAGGTATTCCA
Length of connected seq. 917
Full length Seq ID -
Full length Seq. -
Length of full length seq. -