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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFC658
Library CF
(Link to library)
Clone ID CFC658
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16291-1
Original site URL
Representative seq. ID CFC658P
(Link to Original site)
Representative DNA sequence 
>CFC658 (CFC658Q) /CSM/CF/CFC6-C/CFC658Q.Seq.d/
TAAAATTTGGGTACTCACTGGTGATAAACAAGAAACTGCCATCAACATTGGTTTCTCATG
TCATCTTTTAACATCGGATATGAGGATTATCATTTTGAATGGTAGTAATCAAGAGGATGT
ACACAATCAAATTCAAGGTGCTATCGATGCTTACTTTAGTGATGATGCCGAAAATCATCA
AAACTCTGGCTTTGCATTGGTTGTCGAAGGTTCATGTCTAAACTTTGCCTTGGAAGGCGA
ATTGAAATCGGTTTTCCTTGAATTGGCTGCCAATTGTAAATCTGTTATTTGTTGTCGTAC
CACTCCACTTCAAAAAGCTCAAGTTGTTAAAATGGTTCGTGATACATTACGTGCCGNTAC
ATTGGCAATTGGNGATGGTGCAAACGATGTTTCTATGATTCAAGCAGCTCACATTGGTAT
TGGTATTAGTGGTCATGAGGGTATGCAAGCAGTTATGGCATCCGATTATTCGATTGCACA
ATTTAGTTTCCTCTATCGTTTATTGGTTGTACATGGTCGNTGGGATTACAAGAGXXXXXX
XXXXATTGGACTTGGATTANTCATTTTNCAANTTGGGNTTCCNTTTTAANTTGGNTCGCN
TGGGNANCANTTTTANCTGCAANTCCAGGNATTGGNTCAACTTCAANNGGTGANATNTAN
TATGTTGCCTANAAAANATTTGCAAGNCCATCATTNTGGNTANCAAAANCTGNGCTACCA
ACCNTTTGTTTGGCNCCCGACGTCATTTNCAAANACATCCAAAAANATGTTNAACCNTTC
AACNATCNAATCGTTCAANAAANCNANAAAATNTATGGNNAACCNTCCNATATTATGAGN
AAANAAAACNTGGNTAAATTTTCAAANACCNATGANANCNAAAAAATGGGNGTTGAATCN
CCCCNACNACAANAAAAAANAAAAAANAANAGAATTNAATTNTTAACNTGGA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
KIWVLTGDKQETAINIGFSCHLLTSDMRIIILNGSNQEDVHNQIQGAIDAYFSDDAENHQ
NSGFALVVEGSCLNFALEGELKSVFLELAANCKSVICCRTTPLQKAQVVKMVRDTLRAXT
LAIGDGANDVSMIQAAHIGIGISGHEGMQAVMASDYSIAQFSFLYRLLVVHGRWDYK---

---WTWIXHFXXWXSXLXWXAWXXXLXAXPGIGSTSXGXXXYVAXKXFAXPSXWXXKXXL
PTXCLAPDVIXKXIQKXVXPFNXXIVQXXXKXYGXPSXIMXKXNXXKFSXTXXXXKMGVE
SPXXQXKXKXXRIXXLTW
Translated Amino Acid sequence (All Frames) 
Frame A:
*nlgthw**trnchqhwflmssfnigyedyhfew**srgctqsnsrcyrcll***crkss
klwlcigcrrfmsklclgrrieigfp*igcql*icyllsyhstsksssc*ngs*yitcry
ignwxwckrcfydsssshwywy*ws*gyassygirlfdcti*fplsfigctwsxglqe--
-

---iglglxixqxgxpf*xgsxgxxfxlqxqxlxqlqxvxxxmlpxkxlqxhhxgxqxlx
yqpfvwxptsfxxtskxmxnxstixsfxkxxkxmxnxpil*xxktwxnfqxpmxxkkwxl
nxpxxxkkxkxxexnx*xg

Frame B:
KIWVLTGDKQETAINIGFSCHLLTSDMRIIILNGSNQEDVHNQIQGAIDAYFSDDAENHQ
NSGFALVVEGSCLNFALEGELKSVFLELAANCKSVICCRTTPLQKAQVVKMVRDTLRAXT
LAIGDGANDVSMIQAAHIGIGISGHEGMQAVMASDYSIAQFSFLYRLLVVHGRWDYK---

---ldldxsfxxlgfxfxlxrxgxxfxcxsrxwxnfxx*xxxcclxxickxiixxxkxxa
tnxlfgxrrhxqxhpkxcxtxqxsnrsxxxxnxwxtxxyyexxkxg*ifkxx*xxkngx*
ixpttxkxkkxxnxixnx

Frame C:
kfgyslvinkklpstlvshvif*hri*glsf*mvvikrmytikfkvlsmltlvmmpkiik
tlalhwlskvhv*tlpwkan*nrfslnwlpivnllfvvvplhfkklkllkwfvihyvpxh
wqlxmvqtmfl*fkqltlvlvlvvmrvckqlwhpiirlhnlvssivywlymvxgitr---

---WTWIXHFXXWXSXLXWXAWXXXLXAXPGIGSTSXGXXXYVAXKXFAXPSXWXXKXXL
PTXCLAPDVIXKXIQKXVXPFNXXIVQXXXKXYGXPSXIMXKXNXXKFSXTXXXXKMGVE
SPXXQXKXKXXRIXXLTW
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFC658 (CFC658Q) /CSM/CF/CFC6-C/CFC658Q.Seq.d/                       1376   0.0
AFC445 (AFC445Q) /CSM/AF/AFC4-B/AFC445Q.Seq.d/                        896   0.0
SFJ446 (SFJ446Q) /CSM/SF/SFJ4-B/SFJ446Q.Seq.d/                        842   0.0
SFD448 (SFD448Q) /CSM/SF/SFD4-B/SFD448Q.Seq.d/                        793   0.0
AFO306 (AFO306Q) /CSM/AF/AFO3-A/AFO306Q.Seq.d/                        781   0.0
SLK653 (SLK653Q) /CSM/SL/SLK6-C/SLK653Q.Seq.d/                        396   e-109
CFF710 (CFF710Q) /CSM/CF/CFF7-A/CFF710Q.Seq.d/                        335   7e-91
VHN174 (VHN174Q) /CSM/VH/VHN1-D/VHN174Q.Seq.d/                        331   1e-89
VHL796 (VHL796Q) /CSM/VH/VHL7-D/VHL796Q.Seq.d/                        331   1e-89
VHI386 (VHI386Q) /CSM/VH/VHI3-D/VHI386Q.Seq.d/                        331   1e-89
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence.    68   3e-17  2
BU415886|BU415886.1 603667443F1 CSEQRBL06 Gallus gallus cDNA clone ChEST606e12 5', mRNA sequence.    50   1e-11  3
BU348878|BU348878.1 604170786F1 CSEQCHN68 Gallus gallus cDNA clone ChEST1033k21 5', mRNA sequence.    50   1e-11  3
AL436264|AL436264.1 T3 end of clone BC0AA002D04 of library BC0AA from strain CBS 767 of Debaryomyces hansenii.    50   2e-09  3
AC115592|AC115592.2 Dictyostelium discoideum chromosome 2 map 1-125959 strain AX4, complete sequence.    56   4e-09  2
AC115606|AC115606.2 Dictyostelium discoideum chromosome 2 map 159760-209066 strain AX4, complete sequence.    70   7e-08  1
L01795|L01795.1 Saccharomyces cerevisiae ATPase gene, complete cds.    46   6e-07  4
CK171939|CK171939.1 FGAS047424 Triticum aestivum FGAS: TaLt6 Triticum aestivum cDNA, mRNA sequence.    66   1e-06  1
AC010926|AC010926.12 Arabidopsis thaliana chromosome 1 BAC F28P22 genomic sequence, complete sequence.    62   3e-06  3
BH955546|BH955546.1 odh36c06.g1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    64   4e-06  1
dna update 2004. 5.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q8TF62) RecName: Full=Probable phospholipid-transporting ATPase...   199   1e-49
CR380953_263(CR380953|pid:none) Candida glabrata strain CBS138 c...   199   1e-49
AB075819_1(AB075819|pid:none) Homo sapiens mRNA for KIAA1939 pro...   199   1e-49
AC136955_10(AC136955|pid:none) Medicago truncatula clone mth2-10...   195   2e-48
AC137554_1(AC137554|pid:none) Medicago truncatula clone mth2-17j...   195   2e-48
AM920428_370(AM920428|pid:none) Penicillium chrysogenum Wisconsi...   195   2e-48
CR382131_1440(CR382131|pid:none) Yarrowia lipolytica strain CLIB...   194   3e-48
(P39524) RecName: Full=Probable phospholipid-transporting ATPase...   194   4e-48
FM992690_676(FM992690|pid:none) Candida dubliniensis CD36 chromo...   194   5e-48
(P98198) RecName: Full=Probable phospholipid-transporting ATPase...   194   5e-48
protein update 2009. 5.12
PSORT 

 psg: 0.89  gvh: 0.42  alm: 0.39  top: 0.37  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: vesicles of secretory system
	  8.0 %: endoplasmic reticulum

>> prediction for CFC658 is cyt
5' end seq. ID CFC658F
5' end seq. 
>CFC658F.Seq
TAAAATTTGGGTACTCACTGGTGATAAACAAGAAACTGCCATCAACATTGGTTTCTCATG
TCATCTTTTAACATCGGATATGAGGATTATCATTTTGAATGGTAGTAATCAAGAGGATGT
ACACAATCAAATTCAAGGTGCTATCGATGCTTACTTTAGTGATGATGCCGAAAATCATCA
AAACTCTGGCTTTGCATTGGTTGTCGAAGGTTCATGTCTAAACTTTGCCTTGGAAGGCGA
ATTGAAATCGGTTTTCCTTGAATTGGCTGCCAATTGTAAATCTGTTATTTGTTGTCGTAC
CACTCCACTTCAAAAAGCTCAAGTTGTTAAAATGGTTCGTGATACATTACGTGCCGNTAC
ATTGGCAATTGGNGATGGTGCAAACGATGTTTCTATGATTCAAGCAGCTCACATTGGTAT
TGGTATTAGTGGTCATGAGGGTATGCAAGCAGTTATGGCATCCGATTATTCGATTGCACA
ATTTAGTTTCCTCTATCGTTTATTGGTTGTACATGGTCGNTGGGATTACAAGAG------
----
Length of 5' end seq. 534
3' end seq. ID CFC658Z
3' end seq. 
>CFC658Z.Seq
----------ATTGGACTTGGATTANTCATTTTNCAANTTGGGNTTCCNTTTTAANTTGG
NTCGCNTGGGNANCANTTTTANCTGCAANTCCAGGNATTGGNTCAACTTCAANNGGTGAN
ATNTANTATGTTGCCTANAAAANATTTGCAAGNCCATCATTNTGGNTANCAAAANCTGNG
CTACCAACCNTTTGTTTGGCNCCCGACGTCATTTNCAAANACATCCAAAAANATGTTNAA
CCNTTCAACNATCNAATCGTTCAANAAANCNANAAAATNTATGGNNAACCNTCCNATATT
ATGAGNAAANAAAACNTGGNTAAATTTTCAAANACCNATGANANCNAAAAAATGGGNGTT
GAATCNCCCCNACNACAANAAAAAANAAAAAANAANAGAATTNAATTNTTAACNTGGA
Length of 3' end seq. 408
Connected seq. ID CFC658P
Connected seq. 
>CFC658P.Seq
TAAAATTTGGGTACTCACTGGTGATAAACAAGAAACTGCCATCAACATTGGTTTCTCATG
TCATCTTTTAACATCGGATATGAGGATTATCATTTTGAATGGTAGTAATCAAGAGGATGT
ACACAATCAAATTCAAGGTGCTATCGATGCTTACTTTAGTGATGATGCCGAAAATCATCA
AAACTCTGGCTTTGCATTGGTTGTCGAAGGTTCATGTCTAAACTTTGCCTTGGAAGGCGA
ATTGAAATCGGTTTTCCTTGAATTGGCTGCCAATTGTAAATCTGTTATTTGTTGTCGTAC
CACTCCACTTCAAAAAGCTCAAGTTGTTAAAATGGTTCGTGATACATTACGTGCCGNTAC
ATTGGCAATTGGNGATGGTGCAAACGATGTTTCTATGATTCAAGCAGCTCACATTGGTAT
TGGTATTAGTGGTCATGAGGGTATGCAAGCAGTTATGGCATCCGATTATTCGATTGCACA
ATTTAGTTTCCTCTATCGTTTATTGGTTGTACATGGTCGNTGGGATTACAAGAG------
----ATTGGACTTGGATTANTCATTTTNCAANTTGGGNTTCCNTTTTAANTTGGNTCGCN
TGGGNANCANTTTTANCTGCAANTCCAGGNATTGGNTCAACTTCAANNGGTGANATNTAN
TATGTTGCCTANAAAANATTTGCAAGNCCATCATTNTGGNTANCAAAANCTGNGCTACCA
ACCNTTTGTTTGGCNCCCGACGTCATTTNCAAANACATCCAAAAANATGTTNAACCNTTC
AACNATCNAATCGTTCAANAAANCNANAAAATNTATGGNNAACCNTCCNATATTATGAGN
AAANAAAACNTGGNTAAATTTTCAAANACCNATGANANCNAAAAAATGGGNGTTGAATCN
CCCCNACNACAANAAAAAANAAAAAANAANAGAATTNAATTNTTAACNTGGA
Length of connected seq. 942
Full length Seq ID -
Full length Seq. -
Length of full length seq. -