>CFC652 (CFC652Q) /CSM/CF/CFC6-C/CFC652Q.Seq.d/
XXXXXXXXXXTGAAGAGAAATTTAAATGGTATTCCAATAACATGTAAAATTAGACTACTA
TCAACCGACCAAGAAACTATCGACCTATTACGTATAATCGAATCCACTGGTGTCAGTGCA
ATCGGTGTTCACTGTCGTATGATACCAGAGAGACCAAGGGACCCAGCACATTGGGATAGA
TTAGAAAACATACTAAGCAATGCATCGTTCAGTGTGCCAATCATTGCAAATGGTGATATC
TTTGAACATGCAGATATTGAAAAAATTAAAAAACAAACTAAAGTAGACTCAATAATGATT
GCAAGGGGTGTCGTTAAGAATGTTTCAATCTTTAGTAAACCTTCACCAATTGATTTAAAA
CAAATCATTCAAGAATATACTGAAATAGCTTATCAAACTAATAATAGTCCTGTAAACACT
AAATACGTTATCAATAGTATGTTAAATGAAAATAATATTACAACTAATAAAGAAGCAAAA
GCAATGTCCTCTGCTCGTGATTATGATACAATCACTAAAATTTGGGGAATCAATGATAAA
TTTAAACAATTTTGTTTAGAAAATAATATTGAAAAAGAAGATGATAAAAATATAAATAAA
AATAAAAATAATAATAATAAAAATAGTAAGAAAACAAAACTTGAAGAAACTAATAATCAA
TGTGATATTAAAAAACAAAAAATAGAAGANAAGNATAAAAATAATAATAATATAATTAAT
AAA

---KRNLNGIPITCKIRLLSTDQETIDLLRIIESTGVSAIGVHCRMIPERPRDPAHWDRL
ENILSNASFSVPIIANGDIFEHADIEKIKKQTKVDSIMIARGVVKNVSIFSKPSPIDLKQ
IIQEYTEIAYQTNNSPVNTKYVINSMLNENNITTNKEAKAMSSARDYDTITKIWGINDKF
KQFCLENNIEKEDDKNINKNKNNNNKNSKKTKLEETNNQCDIKKQKIEXKXKNNNNIINK

Frame A:
---eekfkwysnnm*n*ttinrprnyrpitynrihwcqcnrcslsydtretkgpstlg*i
rkhtkqcivqcanhckw*yl*tcry*kn*ktn*srlnndckgcr*ecfnl**tftn*fkt
nhsriy*nslsn***sckh*iryq*yvk*k*yyn**rsksnvlcs*l*ynh*nlgnq**i
*tilfrk*y*krr**kyk*k*k****k**enkt*rn**sm*y*ktknrrxx*k***yn**


Frame B:
---KRNLNGIPITCKIRLLSTDQETIDLLRIIESTGVSAIGVHCRMIPERPRDPAHWDRL
ENILSNASFSVPIIANGDIFEHADIEKIKKQTKVDSIMIARGVVKNVSIFSKPSPIDLKQ
IIQEYTEIAYQTNNSPVNTKYVINSMLNENNITTNKEAKAMSSARDYDTITKIWGINDKF
KQFCLENNIEKEDDKNINKNKNNNNKNSKKTKLEETNNQCDIKKQKIEXKXKNNNNIINK


Frame C:
---rei*mvfq*hvkldyyqptkklstyyv*snplvsvqsvftvv*yqrdqgtqhigid*
kty*amhrsvcqslqmvislnmqilkklknklk*tq**lqgvslrmfqslvnlhqli*nk
sfknilk*likliivl*tlntlsivc*mkiilqlikkqkqcpllvimiqslkfgesminl
nnfv*kiilkkkmiki*ikikiiiikivrkqnlkkliinvilknkk*kxxikiiii*li

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFF277 (CFF277Q) /CSM/CF/CFF2-D/CFF277Q.Seq.d/                        569   e-161
CFC652 (CFC652Q) /CSM/CF/CFC6-C/CFC652Q.Seq.d/                        569   e-161
AFD161 (AFD161Q) /CSM/AF/AFD1-C/AFD161Q.Seq.d/                        569   e-161
VFB511 (VFB511Q) /CSM/VF/VFB5-A/VFB511Q.Seq.d/                        504   e-141
SSM223 (SSM223Q) /CSM/SS/SSM2-A/SSM223Q.Seq.d/                         42   0.012
SSL538 (SSL538Q) /CSM/SS/SSL5-B/SSL538Q.Seq.d/                         42   0.012
SSE683 (SSE683Q) /CSM/SS/SSE6-D/SSE683Q.Seq.d/                         42   0.012
SSE330 (SSE330Q) /CSM/SS/SSE3-B/SSE330Q.Seq.d/                         42   0.012
SFI820 (SFI820Q) /CSM/SF/SFI8-A/SFI820Q.Seq.d/                         42   0.012
SHK537 (SHK537Q) /CSM/SH/SHK5-B/SHK537Q.Seq.d/                         40   0.046

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL137080|AL137080.2 Arabidopsis thaliana DNA chromosome 3, BAC clone F28O9.    38   0.007  4
BX842644|BX842644.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 3/4.    36   0.093  14
AC100244|AC100244.5 Mus musculus chromosome 8 clone RP23-64K12 map 8, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces.    34   0.27   7
AC026545|AC026545.2 Homo sapiens chromosome 1 clone RP11-166K24 map 1, WORKING DRAFT SEQUENCE, 18 unordered pieces.    36   0.33   6
AC096885|AC096885.2 Danio rerio clone 136L4, complete sequence.    46   0.73   1
AF500476|AF500476.1 Waldsteinia geoides clone 1 granule-bound starch synthase (GBSSI) gene, partial cds.    46   0.73   1
BX640469|BX640469.6 Zebrafish DNA sequence from clone DKEY-104M9 in linkage group 19.    46   0.73   1
AC148615|AC148615.2 Ictalurus punctatus clone CH212-99A22, WORKING DRAFT SEQUENCE, 7 ordered pieces.    46   0.73   1
AL139076|AL139076.2 Campylobacter jejuni NCTC11168 complete genome; segment 3/6.    36   0.75   8
AC139776|AC139776.2 Homo sapiens chromosome 5 clone RP11-1005E12, complete sequence.    34   0.89   8

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GM963140_1(GM963140|pid:none) Sequence 10094 from Patent WO20081...   125   1e-27
GM960614_1(GM960614|pid:none) Sequence 7568 from Patent WO200814...   125   2e-27
BT036303_1(BT036303|pid:none) Zea mays full-length cDNA clone ZM...   124   3e-27
GM960610_1(GM960610|pid:none) Sequence 7564 from Patent WO200814...   124   3e-27
CP000583_186(CP000583|pid:none) Ostreococcus lucimarinus CCE9901...   121   2e-26
BC120342_1(BC120342|pid:none) Bos taurus dihydrouridine synthase...   109   7e-23
AE014298_2107(AE014298|pid:none) Drosophila melanogaster chromos...   109   9e-23
BC158728_1(BC158728|pid:none) Rattus norvegicus dihydrouridine s...   106   6e-22
AK296663_1(AK296663|pid:none) Homo sapiens cDNA FLJ52317 complet...   104   2e-21
AB173744_1(AB173744|pid:none) Macaca fascicularis brain cDNA clo...   104   2e-21

 psg: 0.84  gvh: 0.49  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.40  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: mitochondrial
	 24.0 %: cytoplasmic
	 20.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall
	  4.0 %: peroxisomal

>> prediction for CFC652 is mit

>CFC652Z.Seq
----------TGAAGAGAAATTTAAATGGTATTCCAATAACATGTAAAATTAGACTACTA
TCAACCGACCAAGAAACTATCGACCTATTACGTATAATCGAATCCACTGGTGTCAGTGCA
ATCGGTGTTCACTGTCGTATGATACCAGAGAGACCAAGGGACCCAGCACATTGGGATAGA
TTAGAAAACATACTAAGCAATGCATCGTTCAGTGTGCCAATCATTGCAAATGGTGATATC
TTTGAACATGCAGATATTGAAAAAATTAAAAAACAAACTAAAGTAGACTCAATAATGATT
GCAAGGGGTGTCGTTAAGAATGTTTCAATCTTTAGTAAACCTTCACCAATTGATTTAAAA
CAAATCATTCAAGAATATACTGAAATAGCTTATCAAACTAATAATAGTCCTGTAAACACT
AAATACGTTATCAATAGTATGTTAAATGAAAATAATATTACAACTAATAAAGAAGCAAAA
GCAATGTCCTCTGCTCGTGATTATGATACAATCACTAAAATTTGGGGAATCAATGATAAA
TTTAAACAATTTTGTTTAGAAAATAATATTGAAAAAGAAGATGATAAAAATATAAATAAA
AATAAAAATAATAATAATAAAAATAGTAAGAAAACAAAACTTGAAGAAACTAATAATCAA
TGTGATATTAAAAAACAAAAAATAGAAGANAAGNATAAAAATAATAATAATATAATTAAT
AAA