>CFC647 (CFC647Q) /CSM/CF/CFC6-B/CFC647Q.Seq.d/
XXXXXXXXXXAATTTGAAAAAGAAACCGGACTTGATATACCAATTCATGTCGATGCAGCA
AGTGGTGGTTTCGTTGCACCCTTTCTTCAACCAGAAATTGTTTGGGATTTTAGACTACCA
CGTGTTAAATCAATTAATGGCTCTGGTCATAAATTTGGTCTATCTCCATTGGGAGTTGGC
TGGGTCGTATGGAGAGGTAAAAATGACATTCACAAGGATTTGGTATTCGATGTCAACTAT
CTTGGTGGCAATATGCCAACATTTTCATTGAATTTCTCACGTCCAGGTGGTCAAATAGTA
TGCCAGTACTATAACTTTTTGCGCCATGGTCGTAGTGGATATACCGCAGTTCATCAAGCT
TGTCTAGATCATGGTATTTTCATTTCCAAGCAAGTTAAAAAACACGGTATTTTTGATATT
GTTTATGATGGTACTGGTGCACTTCCAGGTGCATGTTGGAAATTGAAAAAAGATGCAAAA
GTAAAATTCAATCTCTTTGACCTTTCAGATAGAATGAGAAATAGAGGTTGGCAAATTGCA
TCCTATACTCTACCAAACTTACCAGATATTGTAGTTCAAAGAGTATTAATTAGACATGGT
TTCAGTCATNAT

---FEKETGLDIPIHVDAASGGFVAPFLQPEIVWDFRLPRVKSINGSGHKFGLSPLGVGW
VVWRGKNDIHKDLVFDVNYLGGNMPTFSLNFSRPGGQIVCQYYNFLRHGRSGYTAVHQAC
LDHGIFISKQVKKHGIFDIVYDGTGALPGACWKLKKDAKVKFNLFDLSDRMRNRGWQIAS
YTLPNLPDIVVQRVLIRHGFSHX

Frame A:
---i*krnrt*ytnscrcskwwfrctlsstrnclgf*tttc*in*wlws*iwsisigswl
grmer*k*hsqgfgircqlswwqyanifiefltsrwsnsmpvl*lfapws*wiyrssssl
srswyfhfqas*ktryf*ycl*wywctsrcmleiekrckskiqsl*pfr*nek*rlanci
lystkltrycssksin*twfqsx


Frame B:
---FEKETGLDIPIHVDAASGGFVAPFLQPEIVWDFRLPRVKSINGSGHKFGLSPLGVGW
VVWRGKNDIHKDLVFDVNYLGGNMPTFSLNFSRPGGQIVCQYYNFLRHGRSGYTAVHQAC
LDHGIFISKQVKKHGIFDIVYDGTGALPGACWKLKKDAKVKFNLFDLSDRMRNRGWQIAS
YTLPNLPDIVVQRVLIRHGFSHX


Frame C:
---lkkkpdliyqfmsmqqvvvslhpffnqklfgildyhvlnqlmalvinlvylhwelag
sygevkmtftriwysmstilvaicqhfh*ishvqvvk*yastitfcamvvvdipqfiklv
*imvfsfpsklkntvflilfmmvlvhfqvhvgn*kkmqk*nsisltfqie*eievgklhp
ilyqtyqil*fkey*ldmvsvx

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFG840 (SFG840Q) /CSM/SF/SFG8-B/SFG840Q.Seq.d/                       1187   0.0
SFG754 (SFG754Q) /CSM/SF/SFG7-C/SFG754Q.Seq.d/                       1187   0.0
SFE561 (SFE561Q) /CSM/SF/SFE5-C/SFE561Q.Seq.d/                       1187   0.0
SFD593 (SFD593Q) /CSM/SF/SFD5-D/SFD593Q.Seq.d/                       1187   0.0
SFD334 (SFD334Q) /CSM/SF/SFD3-B/SFD334Q.Seq.d/                       1187   0.0
SFC434 (SFC434Q) /CSM/SF/SFC4-B/SFC434Q.Seq.d/                       1187   0.0
SFA821 (SFA821Q) /CSM/SF/SFA8-A/SFA821Q.Seq.d/                       1187   0.0
CHE432 (CHE432Q) /CSM/CH/CHE4-B/CHE432Q.Seq.d/                       1187   0.0
CHB178 (CHB178Q) /CSM/CH/CHB1-D/CHB178Q.Seq.d/                       1187   0.0
CFJ215 (CFJ215Q) /CSM/CF/CFJ2-A/CFJ215Q.Seq.d/                       1187   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AR375678|AR375678.1 Sequence 684 from patent US 6605709.           56   5e-12  3
BG138757|BG138757.1 EST479199 wild tomato pollen Lycopersicon pennellii cDNA clone cLPP11A1 5' sequence, mRNA sequence.    66   9e-10  2
CF811515|CF811515.2 NA716 cDNA non acclimated Bluecrop library Vaccinium corymbosum cDNA 5', mRNA sequence.    70   7e-09  2
AF352732|AF352732.1 Nicotiana tabacum glutamate decarboxylase isozyme 3 mRNA, complete cds.    58   2e-07  2
CK273593|CK273593.1 EST719671 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POADC22 5' end, mRNA sequence.    50   2e-07  2
CN547180|CN547180.1 EST 15169 Ripe Grape Berry LambdaZapII Library Vitis vinifera cDNA clone M5SY00RB007H04 5', mRNA sequence.    64   2e-07  2
CD008053|CD008053.1 VVB082D05_335234 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVB082D05 5, mRNA sequence.    64   4e-07  2
CD006712|CD006712.1 VVB066D06_332552 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVB066D06 5, mRNA sequence.    64   4e-07  2
CD719214|CD719214.1 VVB158G03_410335 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVB158G03 5, mRNA sequence.    64   5e-07  2
CA813481|CA813481.1 CA48LN10IF-E8 Cabernet Sauvignon Leaf - CA48LN Vitis vinifera cDNA clone CA48LN10IF-E8 5', mRNA sequence.    64   5e-07  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FM178379_1197(FM178379|pid:none) Aliivibrio salmonicida LFI1238 ...   300   3e-80
CP000020_1061(CP000020|pid:none) Vibrio fischeri ES114 chromosom...   296   2e-79
CP000789_2953(CP000789|pid:none) Vibrio harveyi ATCC BAA-1116 ch...   293   3e-78
CP000851_2941(CP000851|pid:none) Shewanella pealeana ATCC 700345...   291   7e-78
CP001358_45(CP001358|pid:none) Desulfovibrio desulfuricans subsp...   288   6e-77
CR522870_385(CR522870|pid:none) Desulfotalea psychrophila LSv54 ...   283   3e-75
CP000439_1647(CP000439|pid:none) Francisella tularensis subsp. n...   276   3e-73
AM942759_1390(AM942759|pid:none) Proteus mirabilis strain HI4320...   274   1e-72
CP000608_56(CP000608|pid:none) Francisella tularensis subsp. tul...   273   3e-72
AJ749949_1722(AJ749949|pid:none) Francisella tularensis subsp. t...   270   2e-71

 psg: 0.75  gvh: 0.40  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: vacuolar
	  4.0 %: mitochondrial

>> prediction for CFC647 is nuc

>CFC647Z.Seq
----------AATTTGAAAAAGAAACCGGACTTGATATACCAATTCATGTCGATGCAGCA
AGTGGTGGTTTCGTTGCACCCTTTCTTCAACCAGAAATTGTTTGGGATTTTAGACTACCA
CGTGTTAAATCAATTAATGGCTCTGGTCATAAATTTGGTCTATCTCCATTGGGAGTTGGC
TGGGTCGTATGGAGAGGTAAAAATGACATTCACAAGGATTTGGTATTCGATGTCAACTAT
CTTGGTGGCAATATGCCAACATTTTCATTGAATTTCTCACGTCCAGGTGGTCAAATAGTA
TGCCAGTACTATAACTTTTTGCGCCATGGTCGTAGTGGATATACCGCAGTTCATCAAGCT
TGTCTAGATCATGGTATTTTCATTTCCAAGCAAGTTAAAAAACACGGTATTTTTGATATT
GTTTATGATGGTACTGGTGCACTTCCAGGTGCATGTTGGAAATTGAAAAAAGATGCAAAA
GTAAAATTCAATCTCTTTGACCTTTCAGATAGAATGAGAAATAGAGGTTGGCAAATTGCA
TCCTATACTCTACCAAACTTACCAGATATTGTAGTTCAAAGAGTATTAATTAGACATGGT
TTCAGTCATNAT