>CFC645 (CFC645Q) /CSM/CF/CFC6-B/CFC645Q.Seq.d/
GACTTGCAAAATATATATATAAAAAATAAAAAAATGAGTGAAAACGCACAAAAGGCAACA
GAATTTAAAAATCAAGGTAATGCTGCATTTTCAAGTAAAGATTATAATTCAGCAGTGAAA
TGTTTTGATCAAGCAATTGAATTAGATCCAAGTAATCATATTTTATATAGTAATAGATCA
GCATCATTACTTGCATTAGATAAGAATGAAGATGCATTAACAGATGCAAAGAAAGCAATT
GAATTGAAACCAGATTGGTCAAAAGGTTATTTAAGAGAAACCAATGCACTCTATAAATTG
GGTCGTTTCGAAGAAGCAGAGAAATCAGCAGAGGCTGGTTTAAAGATTGATCCAACCAAT
CAACAATTAGAAGATGCATTAGAGGATGCACAATACGCCACAACTGGTGCAAAAGACCCA
GCTTCAGCAATGGCAAACCTTTTCTCTGCACAAAATTTAACAAAACTTCGTTTCAATCCA
AAGACAGCACCATTCTTCCAACAACCAGATTTCGTTGCAATCATGGATCAAATTTCAAAG
AATCCATCACTTTTCTCACAGTATATTGCCGATCAACGTTTTAGTACTTGTCTTGGTGTT
TTATTAGGTGTTGATATTAATCAAGGXXXXXXXXXXATAAGAATGCAGACACCNCTGCAA
ACATGAAAAAGATTGAAAAGTTAAAGAAACAACGTGACGATGAGGCTTATCTNTNTGTGG
ATCAATCAATCATTGAAAAGAATAAAGGTGTTGAACNCTTTAAAAAAGGTGAATTCCCAN
AGGCAATCAAATGTTTCGAGGAGGCAATTNGTNGTAATCCAAAGGACCACNCAATNTATA
GCAATCGTTCCGCAGCCTATAGCAAATTGTTAGAATATAAATTGGCAATCAAGGATGCCG
ATAAATGTATCGAATTGGAGCCAACATTCATCAAAGGTTACATTANAAAAGGTACTGCCT
TATTCGCAATGANAGAGTATCAACAAGCTTTGGAGGTCTATGATCAAGGTTTAAGAATTG
AAGCCAACAATCCTGAACTCTTGGATCTCTCAAGAAAGACTGTCGCCGCTCTCACTAAAT
TACAAAGTACTCTCNCCGATGAAGAACGTCTTCAACAAGCTGCCAAAGATCCAGAAATTC
AAAAGATTCTCTCTGATCCAATCATGAATCAAATCTTAAAAGATATGTCTGAAAATCCTG
CTGCTGCTCAAGATCATCTTAAAAATCCATTAATTANGGCTAAATTCCAAAAATTAGTTA
ATGCTGGTATAGTTAAATTAGGTTAAATATTTAATAAAATAAATTTTAAAAAAAAAAAAT
TAAAAA

DLQNIYIKNKKMSENAQKATEFKNQGNAAFSSKDYNSAVKCFDQAIELDPSNHILYSNRS
ASLLALDKNEDALTDAKKAIELKPDWSKGYLRETNALYKLGRFEEAEKSAEAGLKIDPTN
QQLEDALEDAQYATTGAKDPASAMANLFSAQNLTKLRFNPKTAPFFQQPDFVAIMDQISK
NPSLFSQYIADQRFSTCLGVLLGVDINQ---

---KNADTXANMKKIEKLKKQRDDEAYLXVDQSIIEKNKGVEXFKKGEFPXAIKCFEEAI
XXNPKDHXXYSNRSAAYSKLLEYKLAIKDADKCIELEPTFIKGYIXKGTALFAMXEYQQA
LEVYDQGLRIEANNPELLDLSRKTVAALTKLQSTLXDEERLQQAAKDPEIQKILSDPIMN
QILKDMSENPAAAQDHLKNPLIXAKFQKLVNAGIVKLG*ifnkinfkkkklk

Frame A:
DLQNIYIKNKKMSENAQKATEFKNQGNAAFSSKDYNSAVKCFDQAIELDPSNHILYSNRS
ASLLALDKNEDALTDAKKAIELKPDWSKGYLRETNALYKLGRFEEAEKSAEAGLKIDPTN
QQLEDALEDAQYATTGAKDPASAMANLFSAQNLTKLRFNPKTAPFFQQPDFVAIMDQISK
NPSLFSQYIADQRFSTCLGVLLGVDINQ---

---irmqtplqt*krlks*rnnvtmrlixxwinqslkrikvlnxlkkvnsxrqsnvsrrq
xvviqrttqxiaivpqpianc*ninwqsrmpinvsnwsqhsskvtlxkvlpysq*xsink
lwrsmikv*elkptilnswisqerlsplslnykvlspmknvfnklpkiqkfkrfsliqs*
iks*kiclkillllkiilkih*lxlnskn*lmlv*ln*vkylik*ilkkkn*k

Frame B:
tckiyi*kikk*vkthkrqqnlkikvmlhfqvkiiiqq*nvlikqln*iqviifyividq
hhylh*irmkmh*qmqrkqln*nqigqkvi*ekpmhsinwvvskkqrnqqrlv*rliqpi
nn*kmh*rmhntpqlvqktqlqqwqtfslhki*qnfvsiqrqhhssnnqislqswikfqr
ihhfshsilpinvlvlvlvfy*vlilik---

---*ecrhxckhekd*kvkett*r*glsxcgsinh*ke*rc*tl*kr*ipxgnqmfrggn
xx*skgpxnx*qsfrsl*qivri*ignqgcr*myriganihqrlhxkryclirnxrvsts
fggl*srfkn*sqqs*tlgslkkdcrrsh*itkysxr*rtsstscqrsrnskdsl*snhe
snlkryv*kscccsrss*ksinxg*ipkis*cwys*irlni**nkf*kkkik

Frame C:
lakyiykk*kne*krtkgnri*ksr*ccifk*rl*fssemf*ssn*irsk*syfi***is
iitcir*e*rcinrckesn*ietrlvkrlfkrnqctl*igsfrrsreisrgwfkd*snqs
tirrcirgctirhnwckrpsfsngkpflctkfnktsfqskdstilpttrfrcnhgsnfke
sitfltvycrstf*ylswcfirc*y*sr---

---KNADTXANMKKIEKLKKQRDDEAYLXVDQSIIEKNKGVEXFKKGEFPXAIKCFEEAI
XXNPKDHXXYSNRSAAYSKLLEYKLAIKDADKCIELEPTFIKGYIXKGTALFAMXEYQQA
LEVYDQGLRIEANNPELLDLSRKTVAALTKLQSTLXDEERLQQAAKDPEIQKILSDPIMN
QILKDMSENPAAAQDHLKNPLIXAKFQKLVNAGIVKLG*ifnkinfkkkklk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFC645 (CFC645Q) /CSM/CF/CFC6-B/CFC645Q.Seq.d/                       2270   0.0
SFJ804 (SFJ804Q) /CSM/SF/SFJ8-A/SFJ804Q.Seq.d/                       1174   0.0
AHF315 (AHF315Q) /CSM/AH/AHF3-A/AHF315Q.Seq.d/                       1174   0.0
SFE465 (SFE465Q) /CSM/SF/SFE4-C/SFE465Q.Seq.d/                       1172   0.0
AFG635 (AFG635Q) /CSM/AF/AFG6-B/AFG635Q.Seq.d/                       1172   0.0
VFM628 (VFM628Q) /CSM/VF/VFM6-B/VFM628Q.Seq.d/                       1170   0.0
AHG883 (AHG883Q) /CSM/AH/AHG8-D/AHG883Q.Seq.d/                       1170   0.0
AFO324 (AFO324Q) /CSM/AF/AFO3-A/AFO324Q.Seq.d/                       1170   0.0
AFD228 (AFD228Q) /CSM/AF/AFD2-B/AFD228Q.Seq.d/                       1170   0.0
SFG510 (SFG510Q) /CSM/SF/SFG5-A/SFG510Q.Seq.d/                       1168   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BH131424|BH131424.1 ENTPC18TR Entamoeba histolytica Sheared DNA Entamoeba histolyticagenomic, genomic survey sequence.    48   0.002  2
BI513962|BI513962.1 BB160014A11E04 Bee Brain Normalized Library, BB16 Apis mellifera cDNA clone BB160014A11E04 5', mRNA sequence.    50   0.005  2
BI513877|BI513877.1 BB160014A10E04 Bee Brain Normalized Library, BB16 Apis mellifera cDNA clone BB160014A10E04 5', mRNA sequence.    50   0.005  2
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    36   0.19   15
AZ682362|AZ682362.1 ENTIS70TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    48   0.34   1
AL929354|AL929354.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 4/4.    32   0.92   10
AP003133|AP003133.2 Staphylococcus aureus subsp. aureus N315 genomic DNA, complete genome, section 5/10.    36   1.6    11
AL050399|AL050399.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F25E4 (ESSA  project).    36   2.0    6
AC069138|AC069138.2 Homo sapiens chromosome 15 clone RP11-810H22, WORKING DRAFT SEQUENCE, 21 unordered pieces.    34   2.1    8
AC118391|AC118391.4 Rattus norvegicus clone CH230-84I10, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    32   2.4    2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54DA8) RecName: Full=Protein STIP1 homolog;                         393   e-108
EF084974_1(EF084974|pid:none) Picea sitchensis clone WS0291_F08 ...   183   1e-50
U89984_1(U89984|pid:none) Acanthamoeba castellanii transformatio...   196   2e-48
EF147519_1(EF147519|pid:none) Populus trichocarpa clone WS0123_C...   192   2e-48
FB910851_1(FB910851|pid:none) Sequence 130124 from Patent WO2008...   193   2e-48
EF146812_1(EF146812|pid:none) Populus trichocarpa clone WS01214_...   162   2e-48
CP001324_114(CP001324|pid:none) Micromonas sp. RCC299 chromosome...   194   6e-48
FB910833_1(FB910833|pid:none) Sequence 130106 from Patent WO2008...   193   1e-47
FB910853_1(FB910853|pid:none) Sequence 130126 from Patent WO2008...   193   1e-47
BT034001_1(BT034001|pid:none) Zea mays full-length cDNA clone ZM...   191   4e-47

 psg: 0.56  gvh: 0.23  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.14  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: endoplasmic reticulum

>> prediction for CFC645 is nuc

>CFC645F.Seq
GACTTGCAAAATATATATATAAAAAATAAAAAAATGAGTGAAAACGCACAAAAGGCAACA
GAATTTAAAAATCAAGGTAATGCTGCATTTTCAAGTAAAGATTATAATTCAGCAGTGAAA
TGTTTTGATCAAGCAATTGAATTAGATCCAAGTAATCATATTTTATATAGTAATAGATCA
GCATCATTACTTGCATTAGATAAGAATGAAGATGCATTAACAGATGCAAAGAAAGCAATT
GAATTGAAACCAGATTGGTCAAAAGGTTATTTAAGAGAAACCAATGCACTCTATAAATTG
GGTCGTTTCGAAGAAGCAGAGAAATCAGCAGAGGCTGGTTTAAAGATTGATCCAACCAAT
CAACAATTAGAAGATGCATTAGAGGATGCACAATACGCCACAACTGGTGCAAAAGACCCA
GCTTCAGCAATGGCAAACCTTTTCTCTGCACAAAATTTAACAAAACTTCGTTTCAATCCA
AAGACAGCACCATTCTTCCAACAACCAGATTTCGTTGCAATCATGGATCAAATTTCAAAG
AATCCATCACTTTTCTCACAGTATATTGCCGATCAACGTTTTAGTACTTGTCTTGGTGTT
TTATTAGGTGTTGATATTAATCAAGG----------

>CFC645Z.Seq
----------ATAAGAATGCAGACACCNCTGCAAACATGAAAAAGATTGAAAAGTTAAAG
AAACAACGTGACGATGAGGCTTATCTNTNTGTGGATCAATCAATCATTGAAAAGAATAAA
GGTGTTGAACNCTTTAAAAAAGGTGAATTCCCANAGGCAATCAAATGTTTCGAGGAGGCA
ATTNGTNGTAATCCAAAGGACCACNCAATNTATAGCAATCGTTCCGCAGCCTATAGCAAA
TTGTTAGAATATAAATTGGCAATCAAGGATGCCGATAAATGTATCGAATTGGAGCCAACA
TTCATCAAAGGTTACATTANAAAAGGTACTGCCTTATTCGCAATGANAGAGTATCAACAA
GCTTTGGAGGTCTATGATCAAGGTTTAAGAATTGAAGCCAACAATCCTGAACTCTTGGAT
CTCTCAAGAAAGACTGTCGCCGCTCTCACTAAATTACAAAGTACTCTCNCCGATGAAGAA
CGTCTTCAACAAGCTGCCAAAGATCCAGAAATTCAAAAGATTCTCTCTGATCCAATCATG
AATCAAATCTTAAAAGATATGTCTGAAAATCCTGCTGCTGCTCAAGATCATCTTAAAAAT
CCATTAATTANGGCTAAATTCCAAAAATTAGTTAATGCTGGTATAGTTAAATTAGGTTAA
ATATTTAATAAAATAAATTTTAAAAAAAAAAAATTAAAAA

>CFC645P.Seq
GACTTGCAAAATATATATATAAAAAATAAAAAAATGAGTGAAAACGCACAAAAGGCAACA
GAATTTAAAAATCAAGGTAATGCTGCATTTTCAAGTAAAGATTATAATTCAGCAGTGAAA
TGTTTTGATCAAGCAATTGAATTAGATCCAAGTAATCATATTTTATATAGTAATAGATCA
GCATCATTACTTGCATTAGATAAGAATGAAGATGCATTAACAGATGCAAAGAAAGCAATT
GAATTGAAACCAGATTGGTCAAAAGGTTATTTAAGAGAAACCAATGCACTCTATAAATTG
GGTCGTTTCGAAGAAGCAGAGAAATCAGCAGAGGCTGGTTTAAAGATTGATCCAACCAAT
CAACAATTAGAAGATGCATTAGAGGATGCACAATACGCCACAACTGGTGCAAAAGACCCA
GCTTCAGCAATGGCAAACCTTTTCTCTGCACAAAATTTAACAAAACTTCGTTTCAATCCA
AAGACAGCACCATTCTTCCAACAACCAGATTTCGTTGCAATCATGGATCAAATTTCAAAG
AATCCATCACTTTTCTCACAGTATATTGCCGATCAACGTTTTAGTACTTGTCTTGGTGTT
TTATTAGGTGTTGATATTAATCAAGG----------ATAAGAATGCAGACACCNCTGCAA
ACATGAAAAAGATTGAAAAGTTAAAGAAACAACGTGACGATGAGGCTTATCTNTNTGTGG
ATCAATCAATCATTGAAAAGAATAAAGGTGTTGAACNCTTTAAAAAAGGTGAATTCCCAN
AGGCAATCAAATGTTTCGAGGAGGCAATTNGTNGTAATCCAAAGGACCACNCAATNTATA
GCAATCGTTCCGCAGCCTATAGCAAATTGTTAGAATATAAATTGGCAATCAAGGATGCCG
ATAAATGTATCGAATTGGAGCCAACATTCATCAAAGGTTACATTANAAAAGGTACTGCCT
TATTCGCAATGANAGAGTATCAACAAGCTTTGGAGGTCTATGATCAAGGTTTAAGAATTG
AAGCCAACAATCCTGAACTCTTGGATCTCTCAAGAAAGACTGTCGCCGCTCTCACTAAAT
TACAAAGTACTCTCNCCGATGAAGAACGTCTTCAACAAGCTGCCAAAGATCCAGAAATTC
AAAAGATTCTCTCTGATCCAATCATGAATCAAATCTTAAAAGATATGTCTGAAAATCCTG
CTGCTGCTCAAGATCATCTTAAAAATCCATTAATTANGGCTAAATTCCAAAAATTAGTTA
ATGCTGGTATAGTTAAATTAGGTTAAATATTTAATAAAATAAATTTTAAAAAAAAAAAAT
TAAAAA