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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFC641
Library CF
(Link to library)
Clone ID CFC641
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CFC641P
(Link to Original site)
Representative DNA sequence 
>CFC641 (CFC641Q) /CSM/CF/CFC6-B/CFC641Q.Seq.d/
CTCTCCTTACCATTGAAGATGGTGTATTTGAAGTTAAAGCCACCGCTGGTGATACTCATT
TAGGTGGTGAAGATTTTGATAATCGTCTCGTTTCTCACTTTGTTGATGAATTTAAACGTA
AACATAAAAAAGATATTATGGGTAATCAACGTGCTGTTCGTCGTTTAAGAACTGCTTGTG
AACGTGCCAAAAGAACTCTTTCATCATCTGCTCAAGCTTCAATTGAAATTGATTCACTCT
TTGAAGGTATTGATTTCTATACTTCAATTACTAGAGCACGTTTTGAAGAACTCTGTGCTG
ATCTTTTCCGTGGTTGTTTAGATCCAGTTGAAAAAGTATTAAAAGATAGTAAATTGGATA
AGAAATCAATTCATGAAATTGTTTTAGTTGGTGGTTCAACTCGTATTCCAAAGGTACAAC
AATTATTACAAGAATTTTTCAATGGTAAAGAATTGAATAAATCAATTAATCCAGATGAAG
CTGTTGCTTATGGTGCCGCTGTACAAGCTGCAATTCTTTCAAATGAAGGTGGTGCTAAAG
TTGCTGATCTTTTATTGTTAGATGTTGCACCATTATCAATGGGTTTAGAAACTGCTGGTG
GTGTTATGACAACTCTXXXXXXXXXXATGTAAGAAAACTCAAACCTTCTCTACATACTCT
GATAATCAACCAGGTGTATTAATTCAAGTTTATGAAGGTGAACGTGCTATGACCAAAGAT
AATAATTTATTGGGTAAATTTGAACTTTCTGGTATTCCACCAGCACCAAGAGGTGTACCA
CAAGTTGAAGTTACATTTGATGTTGATGCAAATGGTATCTTAAATGTATCAGCTGAAGAT
AAATCAACTGGTAACAAACAAAAGATTACAATTACCAATGATAAAGGTCGTCTTTCAAAA
GAAGAAATTGAAAAAATGGTTGCTGATGCAGAGAAATTCAAACAACAAGATGAACAACAA
AAAGATCGTGTTGAATCAAAGAATAAATTGGAAAATTATGCATTCACTGTTAAAAATTCA
ATTAAAGATGAAAAAGTTGCAGCCAAAATTTCAGATTCAGATAAATCAACTATTGAATCT
GAAACTGAAAGTGTACTCAAATGGTTAGAATCAAATCAAACCGCAGAAAAGGATGAATAT
GAAGATAAGATGAAAGCCTTAGAAGCAGTTGTCAATCCAATCATGAGTAAACTCTATCAA
GAAGGAGGTATGCCACAAGGTGGTGGTATGCCAGGTGGTATGTCAAATGATTCACCAAAG
AGTTCAAACAACAAAGTAGACGAATTAGATTGACGGAATTTTTCAGAGGAAAACATCTCT
ATCAAATAGATTTCTTAAAAAATAATAAGTTAGTAAAATCAATAAAGCTTC
sequence update 2001. 6. 1
Translated Amino Acid sequence 
LLTIEDGVFEVKATAGDTHLGGEDFDNRLVSHFVDEFKRKHKKDIMGNQRAVRRLRTACE
RAKRTLSSSAQASIEIDSLFEGIDFYTSITRARFEELCADLFRGCLDPVEKVLKDSKLDK
KSIHEIVLVGGSTRIPKVQQLLQEFFNGKELNKSINPDEAVAYGAAVQAAILSNEGGAKV
ADLLLLDVAPLSMGLETAGGVMTT---

---CKKTQTFSTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELSGIPPAPRGVPQVEVTF
DVDANGILNVSAEDKSTGNKQKITITNDKGRLSKEEIEKMVADAEKFKQQDEQQKDRVES
KNKLENYAFTVKNSIKDEKVAAKISDSDKSTIESETESVLKWLESNQTAEKDEYEDKMKA
LEAVVNPIMSKLYQEGGMPQGGGMPGGMSNDSPKSSNNKVDELD*rnfseenisik*is*
kiis**nq*sf
Translated Amino Acid sequence (All Frames) 
Frame A:
lslplkmvylklkpplvili*vvkiliivsfltllmnlnvnikkilwvinvlfvv*ellv
nvpkelfhhllklqlklihslkvlisilqllehvlknsvlifsvvv*iqlkky*kivnwi
rnqfmklf*lvvqlvfqrynnyyknfsmvkn*inqliqmklllmvplyklqffqmkvvlk
llifyc*mlhhyqwv*kllvvl*ql---

---m*ensnllyil**strcinssl*r*tcydqr**fig*i*tfwyststkrctts*syi
*c*ckwylkcis*r*inw*qtkdynyq**rssfkrrn*kngc*creiqttr*ttkrsc*i
ke*igklcihc*kfn*r*kscsqnfrfr*iny*i*n*kctqmvriksnrrkg*i*r*des
lrsscqsnhe*tlsrrryatrwwyarwyvk*ftkefkqqsrrirlteffrgkhlyqidfl
knnklvksikl

Frame B:
spyh*rwci*s*shrw*ysfrw*rf**ssrfslc**i*t*t*kryyg*stccssfkncl*
tcqknsfiicssfn*n*ftl*ry*flyfny*stf*rtlc*sfpwlfrss*ksikr**ig*
eins*ncfswwfnsyskgttiitrifqw*rie*in*sr*scclwcrctscnsfk*rwc*s
c*sfivrcctiingfrncwwcydns---

---CKKTQTFSTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELSGIPPAPRGVPQVEVTF
DVDANGILNVSAEDKSTGNKQKITITNDKGRLSKEEIEKMVADAEKFKQQDEQQKDRVES
KNKLENYAFTVKNSIKDEKVAAKISDSDKSTIESETESVLKWLESNQTAEKDEYEDKMKA
LEAVVNPIMSKLYQEGGMPQGGGMPGGMSNDSPKSSNNKVDELD*rnfseenisik*is*
kiis**nq*sf

Frame C:
LLTIEDGVFEVKATAGDTHLGGEDFDNRLVSHFVDEFKRKHKKDIMGNQRAVRRLRTACE
RAKRTLSSSAQASIEIDSLFEGIDFYTSITRARFEELCADLFRGCLDPVEKVLKDSKLDK
KSIHEIVLVGGSTRIPKVQQLLQEFFNGKELNKSINPDEAVAYGAAVQAAILSNEGGAKV
ADLLLLDVAPLSMGLETAGGVMTT---

---vrklkpslhtliinqvy*fkfmkvnvl*pkiiiywvnlnflvfhqhqevyhklklhl
mlmqmvs*myqlkinqlvtnkrlqlpmikvvfqkkklkkwllmqrnsnnkmnnkkivlnq
rinwkimhsllkiqlkmkklqpkfqiqinqllnlklkvysng*nqikpqkrmnmkir*kp
*kqlsiqs*vnsikkevchkvvvcqvvcqmihqrvqttk*tn*idgifqrktslsnrflk
k**vskinka
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHQ260 (VHQ260Q) /CSM/VH/VHQ2-C/VHQ260Q.Seq.d/                       1477   0.0
VHP437 (VHP437Q) /CSM/VH/VHP4-B/VHP437Q.Seq.d/                       1477   0.0
VHP236 (VHP236Q) /CSM/VH/VHP2-B/VHP236Q.Seq.d/                       1477   0.0
VHP224 (VHP224Q) /CSM/VH/VHP2-A/VHP224Q.Seq.d/                       1477   0.0
VHO566 (VHO566Q) /CSM/VH/VHO5-C/VHO566Q.Seq.d/                       1477   0.0
VHO443 (VHO443Q) /CSM/VH/VHO4-B/VHO443Q.Seq.d/                       1477   0.0
VHN562 (VHN562Q) /CSM/VH/VHN5-C/VHN562Q.Seq.d/                       1477   0.0
VHK815 (VHK815Q) /CSM/VH/VHK8-A/VHK815Q.Seq.d/                       1477   0.0
VHH646 (VHH646Q) /CSM/VH/VHH6-B/VHH646Q.Seq.d/                       1477   0.0
VHH614 (VHH614Q) /CSM/VH/VHH6-A/VHH614Q.Seq.d/                       1477   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X75263|X75263.1 D.discoideum (AX3) mRNA for heat shock cognate protein (hsc70).  1477   0.0    2
L22736|L22736.1 Dictyostelium discoideum heat shock protein (hspB) gene,.  1469   0.0    2
AF025951|AF025951.1 Dictyostelium discoideum heat-shock cognate protein 70 (hsc70) mRNA, complete cds.   222   e-180  8
AC115684|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence.   222   e-175  12
AF278536|AF278536.1 Parastrongyloides trichosuri heat shock 70 protein gene, complete cds.   157   e-128  10
AJ310880|AJ310880.1 Cryptosporidium baileyi partial hsp70 gene for heat shock protein  70.    96   e-123  12
AF221539|AF221539.1 Cryptosporidium baileyi heat shock protein 70 (HSP70) gene, partial cds.    96   e-123  12
AF221531|AF221531.1 Cryptosporidium parvum isolate 428 heat shock protein 70 (HSP70) gene, partial cds.   107   e-107  10
AX536934|AX536934.1 Sequence 535 from Patent WO02064766.          133   e-107  8
A58313|A58313.1 Sequence 1 from Patent WO9636707.                 133   e-107  8
dna update 2004. 5.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P36415) RecName: Full=Heat shock cognate 70 kDa protein 1;     ...   375   0.0
S37394(S37394) dnaK-type molecular chaperone hsc70 - slime mold ...   375   0.0
(Q557E0) RecName: Full=Heat shock cognate 70 kDa protein 2;     ...   314   e-159
AF025951_1(AF025951|pid:none) Dictyostelium discoideum heat-shoc...   311   e-158
EF506932_1(EF506932|pid:none) Fasciola hepatica heat shock prote...   281   e-149
(Q54BE0) RecName: Full=Heat shock cognate 70 kDa protein 3;           279   e-149
EF506931_1(EF506931|pid:none) Fasciola gigantica heat shock prot...   281   e-149
AF033852_1(AF033852|pid:none) Spinacia oleracea cytosolic heat s...   278   e-148
FB790108_1(FB790108|pid:none) Sequence 9381 from Patent WO200803...   277   e-148
FB790112_1(FB790112|pid:none) Sequence 9385 from Patent WO200803...   278   e-148
protein update 2009. 5.12
PSORT 

 psg: 0.75  gvh: 0.30  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.14  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 40.0 %: cytoplasmic
	  4.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: plasma membrane

>> prediction for CFC641 is nuc
5' end seq. ID CFC641F
5' end seq. 
>CFC641F.Seq
CTCTCCTTACCATTGAAGATGGTGTATTTGAAGTTAAAGCCACCGCTGGTGATACTCATT
TAGGTGGTGAAGATTTTGATAATCGTCTCGTTTCTCACTTTGTTGATGAATTTAAACGTA
AACATAAAAAAGATATTATGGGTAATCAACGTGCTGTTCGTCGTTTAAGAACTGCTTGTG
AACGTGCCAAAAGAACTCTTTCATCATCTGCTCAAGCTTCAATTGAAATTGATTCACTCT
TTGAAGGTATTGATTTCTATACTTCAATTACTAGAGCACGTTTTGAAGAACTCTGTGCTG
ATCTTTTCCGTGGTTGTTTAGATCCAGTTGAAAAAGTATTAAAAGATAGTAAATTGGATA
AGAAATCAATTCATGAAATTGTTTTAGTTGGTGGTTCAACTCGTATTCCAAAGGTACAAC
AATTATTACAAGAATTTTTCAATGGTAAAGAATTGAATAAATCAATTAATCCAGATGAAG
CTGTTGCTTATGGTGCCGCTGTACAAGCTGCAATTCTTTCAAATGAAGGTGGTGCTAAAG
TTGCTGATCTTTTATTGTTAGATGTTGCACCATTATCAATGGGTTTAGAAACTGCTGGTG
GTGTTATGACAACTCT----------
Length of 5' end seq. 616
3' end seq. ID CFC641Z
3' end seq. 
>CFC641Z.Seq
----------ATGTAAGAAAACTCAAACCTTCTCTACATACTCTGATAATCAACCAGGTG
TATTAATTCAAGTTTATGAAGGTGAACGTGCTATGACCAAAGATAATAATTTATTGGGTA
AATTTGAACTTTCTGGTATTCCACCAGCACCAAGAGGTGTACCACAAGTTGAAGTTACAT
TTGATGTTGATGCAAATGGTATCTTAAATGTATCAGCTGAAGATAAATCAACTGGTAACA
AACAAAAGATTACAATTACCAATGATAAAGGTCGTCTTTCAAAAGAAGAAATTGAAAAAA
TGGTTGCTGATGCAGAGAAATTCAAACAACAAGATGAACAACAAAAAGATCGTGTTGAAT
CAAAGAATAAATTGGAAAATTATGCATTCACTGTTAAAAATTCAATTAAAGATGAAAAAG
TTGCAGCCAAAATTTCAGATTCAGATAAATCAACTATTGAATCTGAAACTGAAAGTGTAC
TCAAATGGTTAGAATCAAATCAAACCGCAGAAAAGGATGAATATGAAGATAAGATGAAAG
CCTTAGAAGCAGTTGTCAATCCAATCATGAGTAAACTCTATCAAGAAGGAGGTATGCCAC
AAGGTGGTGGTATGCCAGGTGGTATGTCAAATGATTCACCAAAGAGTTCAAACAACAAAG
TAGACGAATTAGATTGACGGAATTTTTCAGAGGAAAACATCTCTATCAAATAGATTTCTT
AAAAAATAATAAGTTAGTAAAATCAATAAAGCTTC
Length of 3' end seq. 745
Connected seq. ID CFC641P
Connected seq. 
>CFC641P.Seq
CTCTCCTTACCATTGAAGATGGTGTATTTGAAGTTAAAGCCACCGCTGGTGATACTCATT
TAGGTGGTGAAGATTTTGATAATCGTCTCGTTTCTCACTTTGTTGATGAATTTAAACGTA
AACATAAAAAAGATATTATGGGTAATCAACGTGCTGTTCGTCGTTTAAGAACTGCTTGTG
AACGTGCCAAAAGAACTCTTTCATCATCTGCTCAAGCTTCAATTGAAATTGATTCACTCT
TTGAAGGTATTGATTTCTATACTTCAATTACTAGAGCACGTTTTGAAGAACTCTGTGCTG
ATCTTTTCCGTGGTTGTTTAGATCCAGTTGAAAAAGTATTAAAAGATAGTAAATTGGATA
AGAAATCAATTCATGAAATTGTTTTAGTTGGTGGTTCAACTCGTATTCCAAAGGTACAAC
AATTATTACAAGAATTTTTCAATGGTAAAGAATTGAATAAATCAATTAATCCAGATGAAG
CTGTTGCTTATGGTGCCGCTGTACAAGCTGCAATTCTTTCAAATGAAGGTGGTGCTAAAG
TTGCTGATCTTTTATTGTTAGATGTTGCACCATTATCAATGGGTTTAGAAACTGCTGGTG
GTGTTATGACAACTCT----------ATGTAAGAAAACTCAAACCTTCTCTACATACTCT
GATAATCAACCAGGTGTATTAATTCAAGTTTATGAAGGTGAACGTGCTATGACCAAAGAT
AATAATTTATTGGGTAAATTTGAACTTTCTGGTATTCCACCAGCACCAAGAGGTGTACCA
CAAGTTGAAGTTACATTTGATGTTGATGCAAATGGTATCTTAAATGTATCAGCTGAAGAT
AAATCAACTGGTAACAAACAAAAGATTACAATTACCAATGATAAAGGTCGTCTTTCAAAA
GAAGAAATTGAAAAAATGGTTGCTGATGCAGAGAAATTCAAACAACAAGATGAACAACAA
AAAGATCGTGTTGAATCAAAGAATAAATTGGAAAATTATGCATTCACTGTTAAAAATTCA
ATTAAAGATGAAAAAGTTGCAGCCAAAATTTCAGATTCAGATAAATCAACTATTGAATCT
GAAACTGAAAGTGTACTCAAATGGTTAGAATCAAATCAAACCGCAGAAAAGGATGAATAT
GAAGATAAGATGAAAGCCTTAGAAGCAGTTGTCAATCCAATCATGAGTAAACTCTATCAA
GAAGGAGGTATGCCACAAGGTGGTGGTATGCCAGGTGGTATGTCAAATGATTCACCAAAG
AGTTCAAACAACAAAGTAGACGAATTAGATTGACGGAATTTTTCAGAGGAAAACATCTCT
ATCAAATAGATTTCTTAAAAAATAATAAGTTAGTAAAATCAATAAAGCTTC
Length of connected seq. 1361
Full length Seq ID -
Full length Seq. -
Length of full length seq. -