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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFC612
Library CF
(Link to library)
Clone ID CFC612
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16368-1
Original site URL
Representative seq. ID CFC612Z
(Link to Original site)
Representative DNA sequence 
>CFC612 (CFC612Q) /CSM/CF/CFC6-A/CFC612Q.Seq.d/
XXXXXXXXXXTCAACTTGNGCANAGCTATCATCAGCATGTAATCNCGTTGNAATGATTTG
TATTCAAGTACCAAGCAATTGTACCAATACTAGATTCCCATGTTGCCCATCTCATCCAAT
TTGTATTCATCCATCAACTACTGCTGCTTCAACCATTGCAACANCTGCATCAACTGTCGC
AACTACAACCTCTGCAACTACTGCAGGTACAACAACTGGTGGAACTGCAACTGGTGGTTC
AACTTCTGATAGTAGTGCTGCTTCCTCANCCGATAGTAGCGCTGCCTCCTCATCACCATC
AAGCAGTGCTGCTTCAAGTGCCGCTTCAAGTGAACCATCAAGTAGCGCCGCTTCAAGTAG
TGCTCCATCCTCTGCTTCAAGTAGCGCTCCATCCTCTGCCTCAAGTAGTGCTCCATCATC
ATCAGCTTCAAGTTCAGCTGCATCA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
---TXAXLSSACNXVXMICIQVPSNCTNTRFPCCPSHPICIHPSTTAASTIATXASTVAT
TTSATTAGTTTGGTATGGSTSDSSAASSXDSSAASSSPSSSAASSAASSEPSSSAASSSA
PSSASSSAPSSASSSAPSSSASSSAAS
Translated Amino Acid sequence (All Frames) 
Frame A:
---qlxxsyhqhvixlx*fvfkyqaivpildshvahliqfvfihqllllqplqxlhqlsq
lqplqllqvqqlvelqlvvqllivvllpxpivalpphhhqavllqvplqvnhqvaplqvv
lhpllqvalhplpqvvlhhhqlqvqlh


Frame B:
---nlxxaiism*srxndlysstkqlyqy*ipmlpissnlyssinyccfnhcnxcincrn
ynlcnycrynnwwncnwwfnf***ccflxr**rcllitikqccfkcrfk*tik*rrfk*c
silcfk*rsilclk*csiiisfkfsci


Frame C:
---TXAXLSSACNXVXMICIQVPSNCTNTRFPCCPSHPICIHPSTTAASTIATXASTVAT
TTSATTAGTTTGGTATGGSTSDSSAASSXDSSAASSSPSSSAASSAASSEPSSSAASSSA
PSSASSSAPSSASSSAPSSSASSSAAS
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFC612 (CFC612Q) /CSM/CF/CFC6-A/CFC612Q.Seq.d/                        827   0.0
VFN316 (VFN316Q) /CSM/VF/VFN3-A/VFN316Q.Seq.d/                        819   0.0
VFM702 (VFM702Q) /CSM/VF/VFM7-A/VFM702Q.Seq.d/                        819   0.0
VFA856 (VFA856Q) /CSM/VF/VFA8-C/VFA856Q.Seq.d/                        819   0.0
SSM203 (SSM203Q) /CSM/SS/SSM2-A/SSM203Q.Seq.d/                        819   0.0
SSG603 (SSG603Q) /CSM/SS/SSG6-A/SSG603Q.Seq.d/                        819   0.0
SSG344 (SSG344Q) /CSM/SS/SSG3-B/SSG344Q.Seq.d/                        819   0.0
SSB232 (SSB232Q) /CSM/SS/SSB2-B/SSB232Q.Seq.d/                        819   0.0
SLI293 (SLI293Q) /CSM/SL/SLI2-D/SLI293Q.Seq.d/                        819   0.0
SLI237 (SLI237Q) /CSM/SL/SLI2-B/SLI237Q.Seq.d/                        819   0.0
own update 2001.11.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

D13973|D13973.1 Dictyostelium discoideum DNA for Dp87 protein, complete cds.   819   0.0    2
BJ170760|BJ170760.1 Physcomitrella patens subsp. patens cDNA clone:pph26m16, 3' end, single read.   178   5e-41  1
C26876|C26876.1 Oryza sativa (japonica cultivar-group) cDNA, partial sequence (C50317_1A).    36   0.10   2
AK100095|AK100095.1 Oryza sativa (japonica cultivar-group) cDNA clone:J023004B12, full insert sequence.    36   0.61   2
AC027658|AC027658.1 Oryza sativa subsp. japonica BAC nbxb0006I13, chromosome 10, complete sequence.    44   1.7    1
BU027396|BU027396.1 QHG5F22.yg.ab1 QH_EFGHJ sunflower RHA280 Helianthus annuus cDNA clone QHG5F22, mRNA sequence.    44   1.7    1
AE017095|AE017095.1 Oryza sativa (japonica cultivar-group) chromosome 10, section 49 of 77 of the complete sequence.    44   1.7    1
CF324744|CF324744.1 JMT1--01-F20.g1 AtJMT-overexpressing transgenic rice lambda phage cDNA library (JMT1) Oryza sativa cDNA clone JMT1--01-F20, mRNA sequence.    44   1.7    1
BX284669|BX284669.11 Zebrafish DNA sequence from clone CH211-280E18 in linkage group 20.    44   1.7    1
AU068578|AU068578.1 Oryza sativa cDNA, partial sequence (C30478_11Z).    44   1.7    1
dna update 2004. 5.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor;        54   2e-06
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87...    54   2e-06
protein update 2008.12.24
PSORT 

 psg: 0.89  gvh: 0.52  alm: 0.40  top: 0.60  tms: 0.00  mit: 0.53  mip: 0.06
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: mitochondrial
	 12.0 %: nuclear
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: cytoplasmic

>> prediction for CFC612 is mit
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CFC612Z
3' end seq. 
>CFC612Z.Seq
----------TCAACTTGNGCANAGCTATCATCAGCATGTAATCNCGTTGNAATGATTTG
TATTCAAGTACCAAGCAATTGTACCAATACTAGATTCCCATGTTGCCCATCTCATCCAAT
TTGTATTCATCCATCAACTACTGCTGCTTCAACCATTGCAACANCTGCATCAACTGTCGC
AACTACAACCTCTGCAACTACTGCAGGTACAACAACTGGTGGAACTGCAACTGGTGGTTC
AACTTCTGATAGTAGTGCTGCTTCCTCANCCGATAGTAGCGCTGCCTCCTCATCACCATC
AAGCAGTGCTGCTTCAAGTGCCGCTTCAAGTGAACCATCAAGTAGCGCCGCTTCAAGTAG
TGCTCCATCCTCTGCTTCAAGTAGCGCTCCATCCTCTGCCTCAAGTAGTGCTCCATCATC
ATCAGCTTCAAGTTCAGCTGCATCA
Length of 3' end seq. 435
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -