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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFC609
Library CF
(Link to library)
Clone ID CFC609
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16050-1
Original site URL
Representative seq. ID CFC609P
(Link to Original site)
Representative DNA sequence 
>CFC609 (CFC609Q) /CSM/CF/CFC6-A/CFC609Q.Seq.d/
ATTGTTTTCTTTTTTTATTTACTATTATAACAATAAAAATAATAATAATTTAACAAAAGA
AGAAGGTTTATTTAAAATGGATCCATCATCATTATCAAATCCACAAGAATGCAAAGTTAC
TTCATTAAATTTAGTATTATCAGTAAACTTTGAAAAATCACAATTACAAGGTTATGTTGA
AGTTGCCTCACAAATTGTTAAAGAAGGTACTGAAAGTTTAATTTTAGATACTAATCAATT
AGAAATCTCTCATTGTAATGATGTTACTTCAAATCCAATTAATTTCAAACTTTCAGAAGA
ACATAAAGTTTTTGGTAAAGCATTAATCATTTCAATTCCAGAAGGTTTAAGATCAGTTGG
TAAAGAATTCATTGTTAGAGTTTATTATAATACCACTGTTGATTCAAATGCATTACAATG
GTTAACTAAGGATCAAACTGCTGGTAAATTACACCCATACCTTTTCTCACAATGTCAAGC
TATTCATGCAAGATCATTAGTCCCATGTCAAGATAGCCXXXXXXXXXXATGAAAAAGGTT
TCAATCTCTTATGTTATCTTCAATCATTGGTTGGTGTTGCCGATTTTGAAGCTTGGTTAA
AATCATACATTTCCAAATTCTCTTATCAAAGTATTGTCGCCACCCAAATGAAAGATTATT
TCATTGAATATTTCACAGAGAAGGGTAAATCCGAGCAAATCAGTGTTGTAAATTGGAATG
ATTGGTTCAATAAACCAGGTATGCCAATTGAACAAGTTGTCTTTGTTTCCCCAGCTGCTA
AAGTTGCCAAGGATTTAGCTGAAATCACTTGGATCAAAGATCAAGGTGTCAATGCAACCA
AAGATGATATTAAATCATTCAAAACTCAACAAATCATTCTCTTTTTGGATACTCTCATTC
ATTCAACCTCTGAAAAACCATTATCAGTCGATGTTTTAGAGAAAATGGATTCTCTCTATG
GTTTCACCGATGTCGTTAATAGTGAATACAAATTCAGATGGCAAACATTATGTCTTCACT
CTGGTTTAAAGAGAATTGAACCAAAAGTTGTTGAATTTTTAATCTCTCAAGGTCGTATGA
AATTCGTTAGACCACTCTATCGTGAATTAAATAAGGTTAACCCTGAATTGGCTAAATCCA
CTTTTAATAAATACAAATCTCAATATCATATTATCGCTTCAAAGAGGTGCAAAAGATTTA
GGTTTATAAAT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
LFSFFIYYYNNKNNNNLTKEEGLFKMDPSSLSNPQECKVTSLNLVLSVNFEKSQLQGYVE
VASQIVKEGTESLILDTNQLEISHCNDVTSNPINFKLSEEHKVFGKALIISIPEGLRSVG
KEFIVRVYYNTTVDSNALQWLTKDQTAGKLHPYLFSQCQAIHARSLVPCQDS---

---EKGFNLLCYLQSLVGVADFEAWLKSYISKFSYQSIVATQMKDYFIEYFTEKGKSEQI
SVVNWNDWFNKPGMPIEQVVFVSPAAKVAKDLAEITWIKDQGVNATKDDIKSFKTQQIIL
FLDTLIHSTSEKPLSVDVLEKMDSLYGFTDVVNSEYKFRWQTLCLHSGLKRIEPKVVEFL
ISQGRMKFVRPLYRELNKVNPELAKSTFNKYKSQYHIIASKRCKRFRFIN
Translated Amino Acid sequence (All Frames) 
Frame A:
ivfffylll*q*k***fnkrrrfi*ngsiiiikstrmqsyfikfsiiskl*kititrlc*
scltnc*rry*kfnfry*sirnlsl**cyfksn*fqtfrrt*sfw*sinhfnsrrfkisw
*rihc*sll*yhc*fkcitmvn*gsncw*itpipfltmssysckiispmsr*---

---mkkvsisyvifnhwlvlpilklg*nhtfpnslikvlsppk*kiislnisqrrvnpsk
svl*igmigsinqvcqlnklslfpqllklpri*lkslgskikvsmqpkmilnhsklnksf
sfwilsfiqplknhyqsmf*rkwilsmvspmslivntnsdgkhyvftlv*relnqkllnf
*slkvv*nsldhsivn*irltlnwlnpllintnlniilslqrgakdlgl*

Frame B:
LFSFFIYYYNNKNNNNLTKEEGLFKMDPSSLSNPQECKVTSLNLVLSVNFEKSQLQGYVE
VASQIVKEGTESLILDTNQLEISHCNDVTSNPINFKLSEEHKVFGKALIISIPEGLRSVG
KEFIVRVYYNTTVDSNALQWLTKDQTAGKLHPYLFSQCQAIHARSLVPCQDS---

---*krfqslmlssiigwccrf*slvkiihfqillskycrhpnerlfh*ifhreg*iran
qcckle*lvq*tryan*tsclcfpsc*scqgfs*nhldqrsrcqcnqr*y*iiqnstnhs
lfgyshsfnl*ktiisrcfrengfslwfhrcr***iqiqmanimsslwfken*tksc*if
nlsrsyeir*ttls*ik*g*p*ig*ihf**iqisisyyrfkevqki*vyk

Frame C:
cflflftiitikiiii*qkkkvylkwihhhyqihknakllh*i*yyq*tlknhnykvmlk
lphkllkkvlkv*f*ilin*kslivmmllqiqlisnfqknikflvkh*sfqfqkv*dqlv
knsllefiiiplliqmhyng*lrikllvnythtfshnvklfmqdh*shvkia---

---EKGFNLLCYLQSLVGVADFEAWLKSYISKFSYQSIVATQMKDYFIEYFTEKGKSEQI
SVVNWNDWFNKPGMPIEQVVFVSPAAKVAKDLAEITWIKDQGVNATKDDIKSFKTQQIIL
FLDTLIHSTSEKPLSVDVLEKMDSLYGFTDVVNSEYKFRWQTLCLHSGLKRIEPKVVEFL
ISQGRMKFVRPLYRELNKVNPELAKSTFNKYKSQYHIIASKRCKRFRFIN
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFC609 (CFC609Q) /CSM/CF/CFC6-A/CFC609Q.Seq.d/                       2309   0.0
VHC213 (VHC213Q) /CSM/VH/VHC2-A/VHC213Q.Seq.d/                       1354   0.0
CFC772 (CFC772Q) /CSM/CF/CFC7-C/CFC772Q.Seq.d/                       1354   0.0
AFC681 (AFC681Q) /CSM/AF/AFC6-D/AFC681Q.Seq.d/                       1354   0.0
AFE167 (AFE167Q) /CSM/AF/AFE1-C/AFE167Q.Seq.d/                       1344   0.0
AFM389 (AFM389Q) /CSM/AF/AFM3-D/AFM389Q.Seq.d/                       1340   0.0
AFG838 (AFG838Q) /CSM/AF/AFG8-B/AFG838Q.Seq.d/                       1340   0.0
AFM165 (AFM165Q) /CSM/AF/AFM1-C/AFM165Q.Seq.d/                       1338   0.0
VHE268 (VHE268Q) /CSM/VH/VHE2-C/VHE268Q.Seq.d/                       1328   0.0
AHA171 (AHA171Q) /CSM/AH/AHA1-C/AHA171Q.Seq.d/                       1328   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U27538|U27538.1 Dictyostelium discoideum leukotriene A4 hydrolase mRNA, partial cds.  1302   0.0    2
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 2/4.    32   2e-07  19
AF052006|AF052006.2 Dictyostelium discoideum C-module-binding factor (cbfA) gene, complete cds.    44   5e-07  3
AC117072|AC117072.3 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    46   1e-05  5
BX927247|BX927247.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-189K22.    34   3e-05  13
CR381625|CR381625.1 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-226F10.    38   6e-05  10
AP004170|AP004170.1 Mycoplasma penetrans genomic DNA, complete sequence, section 1/5.    32   8e-05  19
AC117081|AC117081.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    44   1e-04  5
AC117076|AC117076.3 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.    44   5e-04  3
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    46   0.001  6
dna update 2004. 5.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U27538_1(U27538|pid:none) Dictyostelium discoideum leukotriene A...   440   e-122
(P52922) RecName: Full=Leukotriene A-4 hydrolase;          EC=3....   440   e-122
BC072036_1(BC072036|pid:none) Xenopus laevis hypothetical protei...   129   2e-28
(A3LQI7) RecName: Full=Leukotriene A-4 hydrolase 2;          EC=...   129   3e-28
(A7THG7) RecName: Full=Leukotriene A-4 hydrolase;          EC=3....   123   1e-26
BX255970_6(BX255970|pid:none) Zebrafish DNA sequence from clone ...   121   4e-26
AK301308_1(AK301308|pid:none) Homo sapiens cDNA FLJ52432 complet...   119   3e-25
(A2QKF8) RecName: Full=Leukotriene A-4 hydrolase;          EC=3....   118   4e-25
(Q0CFY9) RecName: Full=Leukotriene A-4 hydrolase;          EC=3....   116   2e-24
(Q6S9C8) RecName: Full=Leukotriene A-4 hydrolase;          EC=3....   115   4e-24
protein update 2009. 5.12
PSORT 

 psg: 0.92  gvh: 0.40  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for CFC609 is cyt
5' end seq. ID CFC609F
5' end seq. 
>CFC609F.Seq
ATTGTTTTCTTTTTTTATTTACTATTATAACAATAAAAATAATAATAATTTAACAAAAGA
AGAAGGTTTATTTAAAATGGATCCATCATCATTATCAAATCCACAAGAATGCAAAGTTAC
TTCATTAAATTTAGTATTATCAGTAAACTTTGAAAAATCACAATTACAAGGTTATGTTGA
AGTTGCCTCACAAATTGTTAAAGAAGGTACTGAAAGTTTAATTTTAGATACTAATCAATT
AGAAATCTCTCATTGTAATGATGTTACTTCAAATCCAATTAATTTCAAACTTTCAGAAGA
ACATAAAGTTTTTGGTAAAGCATTAATCATTTCAATTCCAGAAGGTTTAAGATCAGTTGG
TAAAGAATTCATTGTTAGAGTTTATTATAATACCACTGTTGATTCAAATGCATTACAATG
GTTAACTAAGGATCAAACTGCTGGTAAATTACACCCATACCTTTTCTCACAATGTCAAGC
TATTCATGCAAGATCATTAGTCCCATGTCAAGATAGCC----------
Length of 5' end seq. 518
3' end seq. ID CFC609Z
3' end seq. 
>CFC609Z.Seq
----------ATGAAAAAGGTTTCAATCTCTTATGTTATCTTCAATCATTGGTTGGTGTT
GCCGATTTTGAAGCTTGGTTAAAATCATACATTTCCAAATTCTCTTATCAAAGTATTGTC
GCCACCCAAATGAAAGATTATTTCATTGAATATTTCACAGAGAAGGGTAAATCCGAGCAA
ATCAGTGTTGTAAATTGGAATGATTGGTTCAATAAACCAGGTATGCCAATTGAACAAGTT
GTCTTTGTTTCCCCAGCTGCTAAAGTTGCCAAGGATTTAGCTGAAATCACTTGGATCAAA
GATCAAGGTGTCAATGCAACCAAAGATGATATTAAATCATTCAAAACTCAACAAATCATT
CTCTTTTTGGATACTCTCATTCATTCAACCTCTGAAAAACCATTATCAGTCGATGTTTTA
GAGAAAATGGATTCTCTCTATGGTTTCACCGATGTCGTTAATAGTGAATACAAATTCAGA
TGGCAAACATTATGTCTTCACTCTGGTTTAAAGAGAATTGAACCAAAAGTTGTTGAATTT
TTAATCTCTCAAGGTCGTATGAAATTCGTTAGACCACTCTATCGTGAATTAAATAAGGTT
AACCCTGAATTGGCTAAATCCACTTTTAATAAATACAAATCTCAATATCATATTATCGCT
TCAAAGAGGTGCAAAAGATTTAGGTTTATAAAT
Length of 3' end seq. 683
Connected seq. ID CFC609P
Connected seq. 
>CFC609P.Seq
ATTGTTTTCTTTTTTTATTTACTATTATAACAATAAAAATAATAATAATTTAACAAAAGA
AGAAGGTTTATTTAAAATGGATCCATCATCATTATCAAATCCACAAGAATGCAAAGTTAC
TTCATTAAATTTAGTATTATCAGTAAACTTTGAAAAATCACAATTACAAGGTTATGTTGA
AGTTGCCTCACAAATTGTTAAAGAAGGTACTGAAAGTTTAATTTTAGATACTAATCAATT
AGAAATCTCTCATTGTAATGATGTTACTTCAAATCCAATTAATTTCAAACTTTCAGAAGA
ACATAAAGTTTTTGGTAAAGCATTAATCATTTCAATTCCAGAAGGTTTAAGATCAGTTGG
TAAAGAATTCATTGTTAGAGTTTATTATAATACCACTGTTGATTCAAATGCATTACAATG
GTTAACTAAGGATCAAACTGCTGGTAAATTACACCCATACCTTTTCTCACAATGTCAAGC
TATTCATGCAAGATCATTAGTCCCATGTCAAGATAGCC----------ATGAAAAAGGTT
TCAATCTCTTATGTTATCTTCAATCATTGGTTGGTGTTGCCGATTTTGAAGCTTGGTTAA
AATCATACATTTCCAAATTCTCTTATCAAAGTATTGTCGCCACCCAAATGAAAGATTATT
TCATTGAATATTTCACAGAGAAGGGTAAATCCGAGCAAATCAGTGTTGTAAATTGGAATG
ATTGGTTCAATAAACCAGGTATGCCAATTGAACAAGTTGTCTTTGTTTCCCCAGCTGCTA
AAGTTGCCAAGGATTTAGCTGAAATCACTTGGATCAAAGATCAAGGTGTCAATGCAACCA
AAGATGATATTAAATCATTCAAAACTCAACAAATCATTCTCTTTTTGGATACTCTCATTC
ATTCAACCTCTGAAAAACCATTATCAGTCGATGTTTTAGAGAAAATGGATTCTCTCTATG
GTTTCACCGATGTCGTTAATAGTGAATACAAATTCAGATGGCAAACATTATGTCTTCACT
CTGGTTTAAAGAGAATTGAACCAAAAGTTGTTGAATTTTTAATCTCTCAAGGTCGTATGA
AATTCGTTAGACCACTCTATCGTGAATTAAATAAGGTTAACCCTGAATTGGCTAAATCCA
CTTTTAATAAATACAAATCTCAATATCATATTATCGCTTCAAAGAGGTGCAAAAGATTTA
GGTTTATAAAT
Length of connected seq. 1201
Full length Seq ID -
Full length Seq. -
Length of full length seq. -