CFC607
Library CF
(Link to library)
Clone ID CFC607
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CFC607P
(Link to Original site)
Representative DNA sequence
>CFC607 (CFC607Q) /CSM/CF/CFC6-A/CFC607Q.Seq.d/
ATTCCACAACACTACAAAAAGACAATAATTATTAATAAGAATGGTTTTACAATTTGTCGA
CGATTCATCATGTAAATCAGCAATTGCAGATTTAAGAAATGATTCAACCTCAACTGATTG
GGTATTATTATCATTTGAATCACCAAAATCAGAAAAGATTAAATTAGTTGGAAGTGGTTC
AGGTGGTGTAGCAGAATTAGTTGAACATTTACAAGATGATTTGGTTGGATTTGCATTGGT
TAGAAAGATTGATAAAATCGATGATAGTGAAACCGTTAAATTTGCATTCATCAATTTCAT
TGGAGAAAAAGTTGGAATCTTTCAAAAAGGTAAAATCTCTGTCACCATTGGTGGTGTTAA
AGATTTCTTGGGTTCATTCCAATGTGATTTCTTAATCACCTCAAAGAATGAAATCTCTGA
TGAAATCGTATTAAATAAAATTCAAGATATCTCTGGTACAGGTTCAAAAGTTTTAGATGA
AAATGGTGCAAAAACTGGTGCTTCAAAATCAACCACTTCACCAACCAACTCTTTCAGAAA
ATCAACATACGGTTCAGTTTCTTCACCATCATCCTCAAATAAAGACTCAATTAAATTAGG
TGATGAACCAGCAATTCGTGAAGCCTTAAAAGAATXXXXXXXXXXTGTTAAGAGCACGTT
TAGGTACTCATACTGGATTTGTAAATCAGTTAGTTACACCATATCATGTTGATATTAAAT
GTACAGTTAAATCAGAAATTTCAAAAGAGATTGTAGAGGAAACCGTTGCAAAAGCATCAG
GTAAAGCATCAATGGTATTGAGTGATGATGCTCAATCACGTGGTAGTGGTGGTCGTATGA
CCTCAAGTTACAGTTCATCAAGTGCTTCAACTCAAGGTTCAAACACAACCGGTAAAACAT
TTGCTGGTGCTGGTAGTAAATTTACAACACCATCAGCTGTGCCAAAATCAAGTGGTTCAA
CACTTGGTTTCGATGATGAACAACAAGTTAGAGATACAATCAAAGATGTTAAATCCGATA
GTACTGACACTAATTGGTGTTTAGTTGGTTATAAAAATGATACCACTTTAACTGTCATTG
CTAAAGGAAATGGTGGTGTTGATGAATTGGTCGGCCATTTGAATTCAAAGATCGTTGCTT
ATGGCTTAGTTCGTGAAGTTGAAAGATTCGATCTCTCTGATACCATCAAATTTGCTTTCA
TCGATTTCGTTGGTGAAGATATCAATCGTATGTTTAGAGCTAAACTTGGTACTCATTCTG
GTACTGTTAAACAATTATTCCATCCATATCATGTTGATTTACATGTCTCCTCTCCTTCTG
AATTATCCNCTGAAATCGTTACTAAAACTATCACTCAAAATTNCGGAACTCTCAAGNAGA
AAAGCC
sequence update 2001. 6. 1
Translated Amino Acid sequence
fhnttkrq*LLIRMVLQFVDDSSCKSAIADLRNDSTSTDWVLLSFESPKSEKIKLVGSGS
GGVAELVEHLQDDLVGFALVRKIDKIDDSETVKFAFINFIGEKVGIFQKGKISVTIGGVK
DFLGSFQCDFLITSKNEISDEIVLNKIQDISGTGSKVLDENGAKTGASKSTTSPTNSFRK
STYGSVSSPSSSNKDSIKLGDEPAIREALKE---

---LRARLGTHTGFVNQLVTPYHVDIKCTVKSEISKEIVEETVAKASGKASMVLSDDAQS
RGSGGRMTSSYSSSSASTQGSNTTGKTFAGAGSKFTTPSAVPKSSGSTLGFDDEQQVRDT
IKDVKSDSTDTNWCLVGYKNDTTLTVIAKGNGGVDELVGHLNSKIVAYGLVREVERFDLS
DTIKFAFIDFVGEDINRMFRAKLGTHSGTVKQLFHPYHVDLHVSSPSELSXEIVTKTITQ
NXGTLKXKS


Translated Amino Acid sequence (All Frames)
Frame A:
ipqhykktiiinkngfticrrfim*isncrfkk*fnln*lgiiii*itkirkd*iswkwf
rwcsris*tftr*fgwicig*kd**nr***nr*icihqfhwrkswnlskr*nlchhwwc*
rflgfipm*flnhlke*nl**nrik*nsrylwyrfksfr*kwcknwcfkinhftnqlfqk
inirfsfftiilk*rln*ir**tsns*slkr---

---c*ehv*vlildl*is*lhhimlilnvqlnqkfqkrl*rkplqkhqvkhqwy*vmmln
hvvvvvv*pqvtvhqvlqlkvqtqpvkhllvlvvnlqhhqlcqnqvvqhlvsmmnnklei
qskmlnpivltligv*lvikmipl*lsllkemvvlmnwsai*iqrsllma*fvklkdsis
lipsnllssislvkisivclelnlvlilvllnnysihimliymsplllnyplksllklsl
kixelsxrka

Frame B:
fhnttkrq*LLIRMVLQFVDDSSCKSAIADLRNDSTSTDWVLLSFESPKSEKIKLVGSGS
GGVAELVEHLQDDLVGFALVRKIDKIDDSETVKFAFINFIGEKVGIFQKGKISVTIGGVK
DFLGSFQCDFLITSKNEISDEIVLNKIQDISGTGSKVLDENGAKTGASKSTTSPTNSFRK
STYGSVSSPSSSNKDSIKLGDEPAIREALKE---

---vkstfrysywicksvsytisc*y*mys*irnfkrdcrgnrcksir*singie**csi
tw*wwsydlklqfikcfnsrfkhnr*nicwcw**iyntiscakikwfntwfr**tts*ry
nqrc*ir*y*h*lvfswl*k*yhfnchc*rkwwc**igrpfefkdrclwlss*s*kirsl
*yhqicfhrfrw*ryqsyv*s*twysfwyc*tiipsisc*ftcllsf*iix*nry*nyhs
kxrnsqxek

Frame C:
sttlqkdnny**ewfynlstihhvnqqlqi*emiqpqligyyyhlnhqnqkrln*levvq
vv*qn*lniykmiwldlhwlerliksmivkplnlhssislekklesfkkvkslsplvvlk
iswvhsnvis*spqrmkslmksy*ikfkislvqvqkf*mkmvqklvlqnqplhqptlsen
qhtvqflhhhpqiktqln*vmnqqfvkp*kn---

---LRARLGTHTGFVNQLVTPYHVDIKCTVKSEISKEIVEETVAKASGKASMVLSDDAQS
RGSGGRMTSSYSSSSASTQGSNTTGKTFAGAGSKFTTPSAVPKSSGSTLGFDDEQQVRDT
IKDVKSDSTDTNWCLVGYKNDTTLTVIAKGNGGVDELVGHLNSKIVAYGLVREVERFDLS
DTIKFAFIDFVGEDINRMFRAKLGTHSGTVKQLFHPYHVDLHVSSPSELSXEIVTKTITQ
NXGTLKXKS

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFC607 (CFC607Q) /CSM/CF/CFC6-A/CFC607Q.Seq.d/ 2670 0.0
SFG780 (SFG780Q) /CSM/SF/SFG7-D/SFG780Q.Seq.d/ 1435 0.0
SFG453 (SFG453Q) /CSM/SF/SFG4-C/SFG453Q.Seq.d/ 1429 0.0
CHB476 (CHB476Q) /CSM/CH/CHB4-D/CHB476Q.Seq.d/ 1407 0.0
CFJ663 (CFJ663Q) /CSM/CF/CFJ6-C/CFJ663Q.Seq.d/ 1407 0.0
CFI625 (CFI625Q) /CSM/CF/CFI6-B/CFI625Q.Seq.d/ 1407 0.0
CFC366 (CFC366Q) /CSM/CF/CFC3-C/CFC366Q.Seq.d/ 1407 0.0
AFO410 (AFO410Q) /CSM/AF/AFO4-A/AFO410Q.Seq.d/ 1407 0.0
CFC142 (CFC142Q) /CSM/CF/CFC1-B/CFC142Q.Seq.d/ 1403 0.0
SFF526 (SFF526Q) /CSM/SF/SFF5-B/SFF526Q.Seq.d/ 1402 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116922|AC116922.2 Dictyostelium discoideum chromosome 2 map 6061442-6097630 strain AX4, complete sequence. 1409 0.0 1
AL445565|AL445565.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 3/3. 46 0.011 13
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 32 0.012 21
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 32 0.018 18
AC117076|AC117076.3 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence. 34 0.028 14
CC067446|CC067446.1 CSU-K33r.11J23.SP6 CSU-K33r Aedes aegypti genomic clone CSU-K33r.11J23, DNA sequence. 50 0.090 1
AQ651762|AQ651762.1 Sheared DNA-20H15.TR Sheared DNA Trypanosoma brucei genomic clone Sheared DNA-20H15, DNA sequence. 50 0.090 1
BX005343|BX005343.12 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-29F2. 36 0.11 11
BQ916725|BQ916725.1 QHB18N09.yg.ab1 QH_ABCDI sunflower RHA801 Helianthus annuus cDNA clone QHB18N09, mRNA sequence. 40 0.11 2
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 34 0.12 20
dna update 2004. 5.28
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116922_4(AC116922|pid:none) Dictyostelium discoideum chromosom... 412 e-113
BT081567_1(BT081567|pid:none) Rana catesbeiana clone rcat-evr-52... 65 4e-09
AE017342_92(AE017342|pid:none) Cryptococcus neoformans var. neof... 64 1e-08
(A6H7G2) RecName: Full=Drebrin-like protein; &BC146234_1(BC1462... 63 3e-08
(Q6GM14) RecName: Full=Drebrin-like protein B; &BC074277_1(BC07... 62 4e-08
AY122215_1(AY122215|pid:none) Drosophila melanogaster LP08941 fu... 62 5e-08
(Q7ZXQ9) RecName: Full=Drebrin-like protein A; &BC044296_1(BC04... 62 5e-08
CR457167_1(CR457167|pid:none) Homo sapiens full open reading fra... 62 6e-08
AB170106_1(AB170106|pid:none) Macaca fascicularis brain cDNA clo... 62 6e-08
BC011677_1(BC011677|pid:none) Homo sapiens drebrin-like, mRNA (c... 62 6e-08
protein update 2009. 5.12
PSORT

psg: 0.66 gvh: 0.59 alm: 0.43 top: 0.53 tms: 0.00 mit: 0.28 mip: 0.02
nuc: 0.00 erl: 0.00 erm: 0.60 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

32.0 %: mitochondrial
32.0 %: nuclear
24.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: endoplasmic reticulum

>> prediction for CFC607 is mit

5' end seq. ID CFC607F
5' end seq.
>CFC607F.Seq
ATTCCACAACACTACAAAAAGACAATAATTATTAATAAGAATGGTTTTACAATTTGTCGA
CGATTCATCATGTAAATCAGCAATTGCAGATTTAAGAAATGATTCAACCTCAACTGATTG
GGTATTATTATCATTTGAATCACCAAAATCAGAAAAGATTAAATTAGTTGGAAGTGGTTC
AGGTGGTGTAGCAGAATTAGTTGAACATTTACAAGATGATTTGGTTGGATTTGCATTGGT
TAGAAAGATTGATAAAATCGATGATAGTGAAACCGTTAAATTTGCATTCATCAATTTCAT
TGGAGAAAAAGTTGGAATCTTTCAAAAAGGTAAAATCTCTGTCACCATTGGTGGTGTTAA
AGATTTCTTGGGTTCATTCCAATGTGATTTCTTAATCACCTCAAAGAATGAAATCTCTGA
TGAAATCGTATTAAATAAAATTCAAGATATCTCTGGTACAGGTTCAAAAGTTTTAGATGA
AAATGGTGCAAAAACTGGTGCTTCAAAATCAACCACTTCACCAACCAACTCTTTCAGAAA
ATCAACATACGGTTCAGTTTCTTCACCATCATCCTCAAATAAAGACTCAATTAAATTAGG
TGATGAACCAGCAATTCGTGAAGCCTTAAAAGAAT----------
Length of 5' end seq. 635
3' end seq. ID CFC607Z
3' end seq.
>CFC607Z.Seq
----------TGTTAAGAGCACGTTTAGGTACTCATACTGGATTTGTAAATCAGTTAGTT
ACACCATATCATGTTGATATTAAATGTACAGTTAAATCAGAAATTTCAAAAGAGATTGTA
GAGGAAACCGTTGCAAAAGCATCAGGTAAAGCATCAATGGTATTGAGTGATGATGCTCAA
TCACGTGGTAGTGGTGGTCGTATGACCTCAAGTTACAGTTCATCAAGTGCTTCAACTCAA
GGTTCAAACACAACCGGTAAAACATTTGCTGGTGCTGGTAGTAAATTTACAACACCATCA
GCTGTGCCAAAATCAAGTGGTTCAACACTTGGTTTCGATGATGAACAACAAGTTAGAGAT
ACAATCAAAGATGTTAAATCCGATAGTACTGACACTAATTGGTGTTTAGTTGGTTATAAA
AATGATACCACTTTAACTGTCATTGCTAAAGGAAATGGTGGTGTTGATGAATTGGTCGGC
CATTTGAATTCAAAGATCGTTGCTTATGGCTTAGTTCGTGAAGTTGAAAGATTCGATCTC
TCTGATACCATCAAATTTGCTTTCATCGATTTCGTTGGTGAAGATATCAATCGTATGTTT
AGAGCTAAACTTGGTACTCATTCTGGTACTGTTAAACAATTATTCCATCCATATCATGTT
GATTTACATGTCTCCTCTCCTTCTGAATTATCCNCTGAAATCGTTACTAAAACTATCACT
CAAAATTNCGGAACTCTCAAGNAGAAAAGCC
Length of 3' end seq. 741
Connected seq. ID CFC607P
Connected seq.
>CFC607P.Seq
ATTCCACAACACTACAAAAAGACAATAATTATTAATAAGAATGGTTTTACAATTTGTCGA
CGATTCATCATGTAAATCAGCAATTGCAGATTTAAGAAATGATTCAACCTCAACTGATTG
GGTATTATTATCATTTGAATCACCAAAATCAGAAAAGATTAAATTAGTTGGAAGTGGTTC
AGGTGGTGTAGCAGAATTAGTTGAACATTTACAAGATGATTTGGTTGGATTTGCATTGGT
TAGAAAGATTGATAAAATCGATGATAGTGAAACCGTTAAATTTGCATTCATCAATTTCAT
TGGAGAAAAAGTTGGAATCTTTCAAAAAGGTAAAATCTCTGTCACCATTGGTGGTGTTAA
AGATTTCTTGGGTTCATTCCAATGTGATTTCTTAATCACCTCAAAGAATGAAATCTCTGA
TGAAATCGTATTAAATAAAATTCAAGATATCTCTGGTACAGGTTCAAAAGTTTTAGATGA
AAATGGTGCAAAAACTGGTGCTTCAAAATCAACCACTTCACCAACCAACTCTTTCAGAAA
ATCAACATACGGTTCAGTTTCTTCACCATCATCCTCAAATAAAGACTCAATTAAATTAGG
TGATGAACCAGCAATTCGTGAAGCCTTAAAAGAAT----------TGTTAAGAGCACGTT
TAGGTACTCATACTGGATTTGTAAATCAGTTAGTTACACCATATCATGTTGATATTAAAT
GTACAGTTAAATCAGAAATTTCAAAAGAGATTGTAGAGGAAACCGTTGCAAAAGCATCAG
GTAAAGCATCAATGGTATTGAGTGATGATGCTCAATCACGTGGTAGTGGTGGTCGTATGA
CCTCAAGTTACAGTTCATCAAGTGCTTCAACTCAAGGTTCAAACACAACCGGTAAAACAT
TTGCTGGTGCTGGTAGTAAATTTACAACACCATCAGCTGTGCCAAAATCAAGTGGTTCAA
CACTTGGTTTCGATGATGAACAACAAGTTAGAGATACAATCAAAGATGTTAAATCCGATA
GTACTGACACTAATTGGTGTTTAGTTGGTTATAAAAATGATACCACTTTAACTGTCATTG
CTAAAGGAAATGGTGGTGTTGATGAATTGGTCGGCCATTTGAATTCAAAGATCGTTGCTT
ATGGCTTAGTTCGTGAAGTTGAAAGATTCGATCTCTCTGATACCATCAAATTTGCTTTCA
TCGATTTCGTTGGTGAAGATATCAATCGTATGTTTAGAGCTAAACTTGGTACTCATTCTG
GTACTGTTAAACAATTATTCCATCCATATCATGTTGATTTACATGTCTCCTCTCCTTCTG
AATTATCCNCTGAAATCGTTACTAAAACTATCACTCAAAATTNCGGAACTCTCAAGNAGA
AAAGCC
Length of connected seq. 1376
Full length Seq ID -
Full length Seq. -
Length of full length seq. -