CFC606 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

CFC606
Library	CF (Link to library)
Clone ID	CFC606 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U16568-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/CF/CFC6-A/CFC606Q.Seq.d/
Representative seq. ID	CFC606E (Link to Original site)
Representative DNA sequence	>CFC606 (CFC606Q) /CSM/CF/CFC6-A/CFC606Q.Seq.d/ ATTTAATAAATTTTATATATAATTGTTGGTGAAAGTCATGTCATCAACTACTACTCATTC AAAGAAAGCCATCCGTAAAGCCAAAGTGTCTTCCACCGCCAAACGTGCCGCTGAAGTGAC AACTGCCTCCGATGATGCTATTACTGTTCAAGTAAAATCAAAAAAGACTCTTCGTCCCAC TGAAGTTGATGATGAAATTTATTCAACTGAAAGCACTGATGTATCCGACGTCGAAGTCAG AGAGAAAGTGCCAAAGAAATCAAAGACCAATTCGATTGAAGCTAAAACCATTGACGCTTT AAAAAATGCTGCCACTGCTGTCATCTTCATGAATCTCTTTACCATCCACTGCTCCCAGAA TGGTGTTGAACCAACCTTGAAGACCATTATGGACAATGGTGCTGCATCAAATGAATTATT TCAATTGCTTCAACCTACCCACAATGAATCAGTTAAGAACAACGATAAAATTGAAGGTGA AACATTAAAGAAGCTAATCCACCGTAACTTTAGATCCAAGACTTTGGTTCCATTCAAAAC TGACTACGAAGCTGCCAACACTAAAGTAGTCGAAGCTATTAACCATCGTAACTGCTACTC AGCCCAAGATGTTATAAAAAACATCGAAGCCATTATGAGTTACCACAATGTAATTAATCC GGTGTATCTCATCCATGGTACTGCTGAAGTTCAATTAGAGTATCTAAGATCAATTTTAGA TAATAATATCCTTGCTTTGTTAAAGATGGTCGTACCAGACTGGTTACAAACTGATGTTGC AATCAAACTCAACACTCAAACCGATATCACCGAGTGTCGTGAAGCCATCACCGAGTTGGT TCTTAACAATGCTGATAAGTTCTCGAGAAGAAGACCTTCCGATTCTGCATCGAATACTGA TGAGAAGTTTCTATTAAAAAAGAATCATGCTACTCCAAATCATAACTCTCATAACAGGAA TTCCTTTGATGCTCAAGCTGATAAGATTAGAGCTGCAATATTACCCGAAATAAGAAAAGA CTCTAAGGTAGACCTCAAAAAGATAAGAAGCAGTTTCATCGTTTACCGTCAAAACAAAGG CTACTGTCTCAATTGTGGTAAATCAAATCACTCCACATCTACATGTAGAATTGATCCGGT CGATGCCAAAGCCAATCCAGGTCCATCAGCCAAAAAGCAACAAGACTCGAGAAGGNAGAG TCCAAGTCAAAGATTTTAANAAAA
sequence update	2001. 6. 9
Translated Amino Acid sequence	fnkfyiLLVKVMSSTTTHSKKAIRKAKVSSTAKRAAEVTTASDDAITVQVKSKKTLRPT EVDDEIYSTESTDVSDVEVREKVPKKSKTNSIEAKTIDALKNAATAVIFMNLFTIHCSQN GVEPTLKTIMDNGAASNELFQLLQPTHNESVKNNDKIEGETLKKLIHRNFRSKTLVPFKT DYEAANTKVVEAINHRNCYSAQDVIKNIEAIMSYHNVINPVYLIHGTAEVQLEYLRSILD NNILALLKMVVPDWLQTDVAIKLNTQTDITECREAITELVLNNADKFSRRRPSDSASNTD EKFLLKKNHATPNHNSHNRNSFDAQADKIRAAILPEIRKDSKVDLKKIRSSFIVYRQNKG YCLNCGKSNHSTSTCRIDPVDAKANPGPSAKKQQDSRRXSPSQRFx
Translated Amino Acid sequence (All Frames)	Frame A: i*ilyiivgeshvinyysfkeshpsqsvfhrqtcrsdnclrcyycsskikkdsssh s*nlfnkhcirrrsqresakeikdqfdsnhrfkkcchcchlheslyhpllpe wctnledhygqwccikiisiastypqiseqrnrnikeanppliqdfgsiqn lrscqhssrsypslllsprcykkhrshyelpqcnsgvshpwycssirvskinfr ypcfvkdgrtrlvtnccnqtqhsnryhrvsshhrvgsqc*vlekktfrfciey evsikkescyskslsqeflcss*dscnitrnkkrlgrpqkdkkqfhrlpskqr llsqlwikslhiymnsgrcqsqsrsisqkatrlekxeskskilxk Frame B: fnkfyiLLVKVMSSTTTHSKKAIRKAKVSSTAKRAAEVTTASDDAITVQVKSKKTLRPT EVDDEIYSTESTDVSDVEVREKVPKKSKTNSIEAKTIDALKNAATAVIFMNLFTIHCSQN GVEPTLKTIMDNGAASNELFQLLQPTHNESVKNNDKIEGETLKKLIHRNFRSKTLVPFKT DYEAANTKVVEAINHRNCYSAQDVIKNIEAIMSYHNVINPVYLIHGTAEVQLEYLRSILD NNILALLKMVVPDWLQTDVAIKLNTQTDITECREAITELVLNNADKFSRRRPSDSASNTD EKFLLKKNHATPNHNSHNRNSFDAQADKIRAAILPEIRKDSKVDLKKIRSSFIVYRQNKG YCLNCGKSNHSTSTCRIDPVDAKANPGPSAKKQQDSRRXSPSQRFx Frame C: linfiyncwkschqllliqrkpsvkpkclpppnvplkqlppmmlllfknqkrlfvpl klmmkfiqlkalmyptskserkcqrnqrpirlklkpltlkmlpllsssislpstaprm vlnqprplwtmvlhqmnyfncfnlptmnqlrttiklkvkhrsstvtldprlwfhskl ttklptlksklltivtatqpkmlktskplvttmlircissmvllkfnsidqfi iisllcrwsyqtgyklmlqsnstlkpispsvvkpspswfltmlissreedlpilhrilm rsfykrimllqiitlitgiplmlklirlelqyypkektlrtskreavssftvktka tvsivvnqitphlhvelirsmpkpiqvhqpksnktregrvqvkdfxk
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value CFC606 (CFC606Q) /CSM/CF/CFC6-A/CFC606Q.Seq.d/ 2407 0.0 CFK389 (CFK389Q) /CSM/CF/CFK3-D/CFK389Q.Seq.d/ 2228 0.0 VFA456 (VFA456Q) /CSM/VF/VFA4-C/VFA456Q.Seq.d/ 2167 0.0 SFG296 (SFG296Q) /CSM/SF/SFG2-D/SFG296Q.Seq.d/ 2135 0.0 SHD560 (SHD560Q) /CSM/SH/SHD5-C/SHD560Q.Seq.d/ 1350 0.0 VHJ251 (VHJ251Q) /CSM/VH/VHJ2-C/VHJ251Q.Seq.d/ 1223 0.0 AFI774 (AFI774Q) /CSM/AF/AFI7-D/AFI774Q.Seq.d/ 1191 0.0 AHK513 (AHK513Q) /CSM/AH/AHK5-A/AHK513Q.Seq.d/ 1154 0.0 AHC314 (AHC314Q) /CSM/AH/AHC3-A/AHC314Q.Seq.d/ 1150 0.0 SHJ878 (SHJ878Q) /CSM/SH/SHJ8-D/SHJ878Q.Seq.d/ 1132 0.0
own update	2002.11.16
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AF049230\|AF049230.1 Dictyostelium discoideum LTR-retrotransposon Skipper, Gag (gag) gene, complete cds; and Pro (pro) and Pol (pol) genes, partial cds. 2226 0.0 2 AF017040\|AF017040.1 Dictyostelium discoideum LTR-retrotransposon Skipper, Gag (gag) mRNA, complete cds; and Pro (pro) and Pol (pol) mRNA, partial cds. 2226 0.0 2 AC115612\|AC115612.2 Dictyostelium discoideum chromosome 2 map 6245135-6357017 strain AX4, complete sequence. 882 0.0 13 AE002100\|AE002100.1 Ureaplasma urealyticum section 1 of 59 of the complete genome. 36 0.33 4 BX571968\|BX571968.5 Zebrafish DNA sequence * SEQUENCING IN PROGRESS * from clone DKEY-27C4. 40 0.42 8 AE017279\|AE017279.1 Bacillus cereus ATCC 10987, section 16 of 18 of the complete genome. 36 0.61 12 AE017039\|AE017039.1 Bacillus anthracis str. Ames section 16 of 18 of the complete genome. 36 0.61 11 AE017008\|AE017008.1 Bacillus cereus ATCC 14579 section 11 of 18 of the complete genome. 34 0.80 13 AC124971\|AC124971.14 Medicago truncatula clone mth2-22h8, complete sequence. 40 1.1 5 AC098266\|AC098266.4 Rattus norvegicus clone CH230-1C16, * SEQUENCING IN PROGRESS *, 1 ordered piece. 40 1.1 5
dna update	2004. 3. 2
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AF017040_1(AF017040\|pid:none) Dictyostelium discoideum LTR-retro... 736 0.0 AE014188_199(AE014188\|pid:none) Plasmodium falciparum 3D7 chromo... 43 0.020 CP001047_351(CP001047\|pid:none) Mycoplasma arthritidis 158L3-1, ... 42 0.045 CR382125_227(CR382125\|pid:none) Kluyveromyces lactis strain NRRL... 40 0.17 FN357486_13(FN357486\|pid:none) Schistosoma mansoni genome sequen... 39 0.38 AY523538_1(AY523538\|pid:none) Sweet potato feathery mottle virus... 39 0.38 CP000922_2603(CP000922\|pid:none) Anoxybacillus flavithermus WK1,... 39 0.38 AP008207_3561(AP008207\|pid:none) Oryza sativa (japonica cultivar... 39 0.49 AY216505_1(AY216505\|pid:none) Pirital virus strain VAV-488 segme... 38 0.64 AP009608_821(AP009608\|pid:none) Mycoplasma fermentans PG18 DNA, ... 38 0.64
protein update	2009. 6.30
PSORT	psg: 0.83 gvh: 0.60 alm: 0.39 top: 0.53 tms: 0.00 mit: 0.49 mip: 0.06 nuc: 0.09 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 52.0 %: mitochondrial 32.0 %: nuclear 4.0 %: cytoplasmic 4.0 %: cytoskeletal 4.0 %: vacuolar 4.0 %: extracellular, including cell wall >> prediction for CFC606 is mit
5' end seq. ID	CFC606F
5' end seq.	>CFC606F.Seq ATTTAATAAATTTTATATATAATTGTTGGTGAAAGTCATGTCATCAACTACTACTCATTC AAAGAAAGCCATCCGTAAAGCCAAAGTGTCTTCCACCGCCAAACGTGCCGCTGAAGTGAC AACTGCCTCCGATGATGCTATTACTGTTCAAGTAAAATCAAAAAAGACTCTTCGTCCCAC TGAAGTTGATGATGAAATTTATTCAACTGAAAGCACTGATGTATCCGACGTCGAAGTCAG AGAGAAAGTGCCAAAGAAATCAAAGACCAATTCGATTGAAGCTAAAACCATTGACGCTTT AAAAAATGCTGCCACTGCTGTCATCTTCATGAATCTCTTTACCATCCACTGCTCCCAGAA TGGTGTTGAACCAACCTTGAAGACCATTATGGACAATGGTGCTGCATCAAATGAATTATT TCAATTGCTTCAACCTACCCACAATGAATCAGTTAAGAACAACGATAAAATTGAAGGTGA AACATTAAAGAAGCTAATCCACCGTAACTTTAGATCCAAGACTTTGGTTCCATTCAAAAC TGACTACGAAGCTGCCAACACTAAAGTAGTCGAAGCTATTAACCATCGTAACTGCTACTC AGCCCAAGATGTTATAAAAAACATCGAAGCCATTATGAGTTACCACAATGTAATTAATCC GGTGTATCTCATCCATGGTACTGCTGAAGTT----------
Length of 5' end seq.	691
3' end seq. ID	CFC606Z
3' end seq.	>CFC606Z.Seq ----------ACATTAAAGAAGCTAATCCACCGTAACTTTAGATCCAAGACTTTGGTTCC ATTCAAAACTGACTACGAAGCTGCCAACACTAAAGTAGTCGAAGCTATTAACCATCGTAA CTGCTACTCAGCCCAAGATGTTATAAAAAACATCGAAGCCATTATGAGTTACCACAATGT AATTAATCCGGTGTATCTCATCCATGGTACTGCTGAAGTTCAATTAGAGTATCTAAGATC AATTTTAGATAATAATATCCTTGCTTTGTTAAAGATGGTCGTACCAGACTGGTTACAAAC TGATGTTGCAATCAAACTCAACACTCAAACCGATATCACCGAGTGTCGTGAAGCCATCAC CGAGTTGGTTCTTAACAATGCTGATAAGTTCTCGAGAAGAAGACCTTCCGATTCTGCATC GAATACTGATGAGAAGTTTCTATTAAAAAAGAATCATGCTACTCCAAATCATAACTCTCA TAACAGGAATTCCTTTGATGCTCAAGCTGATAAGATTAGAGCTGCAATATTACCCGAAAT AAGAAAAGACTCTAAGGTAGACCTCAAAAAGATAAGAAGCAGTTTCATCGTTTACCGTCA AAACAAAGGCTACTGTCTCAATTGTGGTAAATCAAATCACTCCACATCTACATGTAGAAT TGATCCGGTCGATGCCAAAGCCAATCCAGGTCCATCAGCCAAAAAGCAACAAGACTCGAG AAGGNAGAGTCCAAGTCAAAGATTTTAANAAAA
Length of 3' end seq.	743
Connected seq. ID	CFC606P
Connected seq.	>CFC606P.Seq ATTTAATAAATTTTATATATAATTGTTGGTGAAAGTCATGTCATCAACTACTACTCATTC AAAGAAAGCCATCCGTAAAGCCAAAGTGTCTTCCACCGCCAAACGTGCCGCTGAAGTGAC AACTGCCTCCGATGATGCTATTACTGTTCAAGTAAAATCAAAAAAGACTCTTCGTCCCAC TGAAGTTGATGATGAAATTTATTCAACTGAAAGCACTGATGTATCCGACGTCGAAGTCAG AGAGAAAGTGCCAAAGAAATCAAAGACCAATTCGATTGAAGCTAAAACCATTGACGCTTT AAAAAATGCTGCCACTGCTGTCATCTTCATGAATCTCTTTACCATCCACTGCTCCCAGAA TGGTGTTGAACCAACCTTGAAGACCATTATGGACAATGGTGCTGCATCAAATGAATTATT TCAATTGCTTCAACCTACCCACAATGAATCAGTTAAGAACAACGATAAAATTGAAGGTGA AACATTAAAGAAGCTAATCCACCGTAACTTTAGATCCAAGACTTTGGTTCCATTCAAAAC TGACTACGAAGCTGCCAACACTAAAGTAGTCGAAGCTATTAACCATCGTAACTGCTACTC AGCCCAAGATGTTATAAAAAACATCGAAGCCATTATGAGTTACCACAATGTAATTAATCC GGTGTATCTCATCCATGGTACTGCTGAAGTT----------ACATTAAAGAAGCTAATCC ACCGTAACTTTAGATCCAAGACTTTGGTTCCATTCAAAACTGACTACGAAGCTGCCAACA CTAAAGTAGTCGAAGCTATTAACCATCGTAACTGCTACTCAGCCCAAGATGTTATAAAAA ACATCGAAGCCATTATGAGTTACCACAATGTAATTAATCCGGTGTATCTCATCCATGGTA CTGCTGAAGTTCAATTAGAGTATCTAAGATCAATTTTAGATAATAATATCCTTGCTTTGT TAAAGATGGTCGTACCAGACTGGTTACAAACTGATGTTGCAATCAAACTCAACACTCAAA CCGATATCACCGAGTGTCGTGAAGCCATCACCGAGTTGGTTCTTAACAATGCTGATAAGT TCTCGAGAAGAAGACCTTCCGATTCTGCATCGAATACTGATGAGAAGTTTCTATTAAAAA AGAATCATGCTACTCCAAATCATAACTCTCATAACAGGAATTCCTTTGATGCTCAAGCTG ATAAGATTAGAGCTGCAATATTACCCGAAATAAGAAAAGACTCTAAGGTAGACCTCAAAA AGATAAGAAGCAGTTTCATCGTTTACCGTCAAAACAAAGGCTACTGTCTCAATTGTGGTA AATCAAATCACTCCACATCTACATGTAGAATTGATCCGGTCGATGCCAAAGCCAATCCAG GTCCATCAGCCAAAAAGCAACAAGACTCGAGAAGGNAGAGTCCAAGTCAAAGATTTTAAN AAAA
Length of connected seq.	1434
Full length Seq ID	CFC606E
Full length Seq.	>CFC606E.Seq ATTTAATAAATTTTATATATAATTGTTGGTGAAAGTCATGTCATCAACTACTACTCATTC AAAGAAAGCCATCCGTAAAGCCAAAGTGTCTTCCACCGCCAAACGTGCCGCTGAAGTGAC AACTGCCTCCGATGATGCTATTACTGTTCAAGTAAAATCAAAAAAGACTCTTCGTCCCAC TGAAGTTGATGATGAAATTTATTCAACTGAAAGCACTGATGTATCCGACGTCGAAGTCAG AGAGAAAGTGCCAAAGAAATCAAAGACCAATTCGATTGAAGCTAAAACCATTGACGCTTT AAAAAATGCTGCCACTGCTGTCATCTTCATGAATCTCTTTACCATCCACTGCTCCCAGAA TGGTGTTGAACCAACCTTGAAGACCATTATGGACAATGGTGCTGCATCAAATGAATTATT TCAATTGCTTCAACCTACCCACAATGAATCAGTTAAGAACAACGATAAAATTGAAGGTGA AACATTAAAGAAGCTAATCCACCGTAACTTTAGATCCAAGACTTTGGTTCCATTCAAAAC TGACTACGAAGCTGCCAACACTAAAGTAGTCGAAGCTATTAACCATCGTAACTGCTACTC AGCCCAAGATGTTATAAAAAACATCGAAGCCATTATGAGTTACCACAATGTAATTAATCC GGTGTATCTCATCCATGGTACTGCTGAAGTTCAATTAGAGTATCTAAGATCAATTTTAGA TAATAATATCCTTGCTTTGTTAAAGATGGTCGTACCAGACTGGTTACAAACTGATGTTGC AATCAAACTCAACACTCAAACCGATATCACCGAGTGTCGTGAAGCCATCACCGAGTTGGT TCTTAACAATGCTGATAAGTTCTCGAGAAGAAGACCTTCCGATTCTGCATCGAATACTGA TGAGAAGTTTCTATTAAAAAAGAATCATGCTACTCCAAATCATAACTCTCATAACAGGAA TTCCTTTGATGCTCAAGCTGATAAGATTAGAGCTGCAATATTACCCGAAATAAGAAAAGA CTCTAAGGTAGACCTCAAAAAGATAAGAAGCAGTTTCATCGTTTACCGTCAAAACAAAGG CTACTGTCTCAATTGTGGTAAATCAAATCACTCCACATCTACATGTAGAATTGATCCGGT CGATGCCAAAGCCAATCCAGGTCCATCAGCCAAAAAGCAACAAGACTCGAGAAGGNAGAG TCCAAGTCAAAGATTTTAANAAAA
Length of full length seq.	1224

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas