CFC605 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

CFC605
Library	CF (Link to library)
Clone ID	CFC605 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U15327-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/CF/CFC6-A/CFC605Q.Seq.d/
Representative seq. ID	CFC605P (Link to Original site)
Representative DNA sequence	>CFC605 (CFC605Q) /CSM/CF/CFC6-A/CFC605Q.Seq.d/ TTTTTTAACAAATACATATACATATACATTAAATAATGGCCACATTATCACGTAATTTAC GTTTATCATTAGATACACCAACCTCAACTTTTGTTAGAACCAAAATTGTTTGTACAATTG GTCCAAAAACAATGAGTGAAGAAGCTTTAATTAAATTAATCGAAACTGGTATGAACGTTT GTAGACTCAACTTTTCACATGGTACTCATGATTATCATGGTCAAGTTATTAAAAATGTTA GATCAGCAATGGAGAAAACAGGTAAAATTATTGCTATTATGTTAGATACTAAAGGTCCAG AAATTAGAACTGGTAAAATTGAAGATCGTTGTGGTTATGTTGATTTATTCGTTGGCCAAG AAATCCTCGTTGATACCAATATGAATCAACCAGGTACTTCATTTAGAATTTCAATCGATT ATAAAGGTTTATTAGATTCAGTTAAAGTTGGTGGTTACATTTTAATTGCTGATGGTGTAA TTTCATTATCTATTACTGCAGTTGAAAAAGAAAAAGGTCATGTTGTTTGTAGAGTTAATA ATAATTCACGTCTTGGTGAAAATAAAAATGTACATTTACCAXXXXXXXXXXTTCGTCGCT CAAAAGATGATCGTTAGTAAATGTAATGCCGCCGGTAAACCAGTAATTACCGCCACTCAA ATGTTGGAATCAATGATCAAGAATCCAAGACCAACCCGTGCTGAAGCTACCGATGTTGCC AATGCCGTTTTAGATGGTTCCGATTGTGTTATGCTTTCAGGTGAAACCGCAAGCGGTGAT TACCCATACGAAGCCGTAGACATTATGGCAAAGATCTGTAGAGAAGCAGAGTTGGTAGAA TCTTCAACTGATTATCAAACTTTATTCGCTGCCCTTAAATTATCATCAGCCAAACCAGTC AGCATTGCTGAAACCGTTGCTTCTTACGCCGTCGCAACCGCTATCGATTTGAAGGCTGAT CTCATCATCACACTCACTGAAACCGGTCTCACTGCTCGTCTCGTCAGTAAATATCGTCCA TCCATTCCAATCATTGCCGTCACTTCATGGTCATACACTGTTAAACATTTACTCGCCACT AGAGGTGCCATTCCATTCTTGGTAGAATCATTGGTCGGCACTGATAAACTCGTTGAATCT TGTCTCGAATATGCTATGAAACATAACTTATGTAAAAAAGGTTCAAGAGTTGTCATTGTT TCTGGTGTTATGGAAGGTGTACCAGGTAAAACCAACAGTTTAAGAGTTCTTACCGTTGGT GAATCAATCAAAGATTTAAAGAAAAAATAAAAATATAGCCATAATTTTAATAAGCGCAGA
sequence update	2001. 6. 1
Translated Amino Acid sequence	fqihihihIMATLSRNLRLSLDTPTSTFVRTKIVCTIGPKTMSEEALIKLIETGMNVC RLNFSHGTHDYHGQVIKNVRSAMEKTGKIIAIMLDTKGPEIRTGKIEDRCGYVDLFVGQE ILVDTNMNQPGTSFRISIDYKGLLDSVKVGGYILIADGVISLSITAVEKEKGHVVCRVNN NSRLGENKNVHLP--- ---FVAQKMIVSKCNAAGKPVITATQMLESMIKNPRPTRAEATDVANAVLDGSDCVMLSG ETASGDYPYEAVDIMAKICREAELVESSTDYQTLFAALKLSSAKPVSIAETVASYAVATA IDLKADLIITLTETGLTARLVSKYRPSIPIIAVTSWSYTVKHLLATRGAIPFLVESLVGT DKLVESCLEYAMKHNLCKKGSRVVIVSGVMEGVPGKTNSLRVLTVGESIKDLKKK*kysh nfnkrr
Translated Amino Acid sequence (All Frames)	Frame A: ffnkyiyiyikwphyhviyvyhihqpqlllepklfvqlvqkqvkkllnsklvtf vdstfhmvlmiimvkllkmldqqwrkqvkllllcilkvqklelvklkivvvmliyslak ksslipiinqvlhlefqsiikvyiqlklvvtfllmvfhylllqlkkkkvmlfveli iihvlvkikmyiy--- ---FVAQKMIVSKCNAAGKPVITATQMLESMIKNPRPTRAEATDVANAVLDGSDCVMLSG ETASGDYPYEAVDIMAKICREAELVESSTDYQTLFAALKLSSAKPVSIAETVASYAVATA IDLKADLIITLTETGLTARLVSKYRPSIPIIAVTSWSYTVKHLLATRGAIPFLVESLVGT DKLVESCLEYAMKHNLCKKGSRVVIVSGVMEGVPGKTNSLRVLTVGESIKDLKKKkysh nfnkrr Frame B: fltntytytlnnghiitftfiirytnlnfcnqnclynwsknnersfninrnwyerl tqlftwyslswssykcisngenrnycyyvryrsrnnwnrslwlcfirwpr npryqyestryfinfnrlrfirfsswwlhfncwcnfiiyycskrkrsccls* ftswkkctft--- ---sslkrslvnvmppvnqlpplkcwnqsriqdqpvlklpmlpmpfmvpivlcfqv kpqavithtkptlwqrsvekqswnlqliiklyslplnyhqpnqsallkpllltpsqpl sirlissshslkpvsllvssvnivhpfqslpslhghtllniysplevpfhswnhwsal inslnlvsnmlnityvkkvqelslflvlwkvyqvkptveflplvnqskirknkniai ilisa Frame C: fqihihihIMATLSRNLRLSLDTPTSTFVRTKIVCTIGPKTMSEEALIKLIETGMNVC RLNFSHGTHDYHGQVIKNVRSAMEKTGKIIAIMLDTKGPEIRTGKIEDRCGYVDLFVGQE ILVDTNMNQPGTSFRISIDYKGLLDSVKVGGYILIADGVISLSITAVEKEKGHVVCRVNN NSRLGENKNVHLP--- ---rrskddr*mcrrtsnyrhsnvgindqesktnpcsyrccqcrfrwfrlcyafr* nrkrlpirsrrhygkdlrsrvgrifnlsnfircpiiisqtsqhcnrcflrrrnry rfegshhhthnrshcssrqissihsnhcrhfmvihctftrhrchsilgriigrh* trilsricyetlmkrfkschcfwcygrctrnqqfkssyrwinqrfkekikip f**aq
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value CFC605 (CFC605Q) /CSM/CF/CFC6-A/CFC605Q.Seq.d/ 2486 0.0 AFF450 (AFF450Q) /CSM/AF/AFF4-C/AFF450Q.Seq.d/ 2480 0.0 AFF443 (AFF443Q) /CSM/AF/AFF4-B/AFF443Q.Seq.d/ 1374 0.0 AFE508 (AFE508Q) /CSM/AF/AFE5-A/AFE508Q.Seq.d/ 1374 0.0 SFI138 (SFI138Q) /CSM/SF/SFI1-B/SFI138Q.Seq.d/ 1372 0.0 SFC160 (SFC160Q) /CSM/SF/SFC1-C/SFC160Q.Seq.d/ 1372 0.0 CFC470 (CFC470Q) /CSM/CF/CFC4-C/CFC470Q.Seq.d/ 1372 0.0 SFB624 (SFB624Q) /CSM/SF/SFB6-A/SFB624Q.Seq.d/ 1370 0.0 CFJ485 (CFJ485Q) /CSM/CF/CFJ4-D/CFJ485Q.Seq.d/ 1370 0.0 AFK742 (AFK742Q) /CSM/AF/AFK7-B/AFK742Q.Seq.d/ 1370 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N CR382401\|CR382401.1 Plasmodium falciparum chromosome 6, complete sequence; segment 4/5. 107 4e-19 9 AE017152\|AE017152.1 Haemophilus ducreyi strain 35000HP section 2 of 6 of the complete genome. 74 6e-16 2 BM159195\|BM159195.1 EST561718 PyBS Plasmodium yoelii yoelii cDNA clone PYCJA82 5' end, mRNA sequence. 96 2e-15 1 BX565550\|BX565550.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected midgut library, clone Tse78b07_q1c. 66 4e-11 2 BX564426\|BX564426.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected midgut library, clone Tse71f05_q1c. 66 4e-11 2 AX622554\|AX622554.1 Sequence 5517 from Patent WO02094868. 40 1e-10 5 AX583820\|AX583820.1 Sequence 197 from Patent WO02059148. 40 1e-10 5 E50268\|E50268.1 Gene of docosahexanoic acid-producing bacterium. 58 2e-10 6 AB025342\|AB025342.1 Moritella marina genes, complete cds, similar to eicosapentaenoic acid synthesis gene cluster. 58 2e-10 6 CB098512\|CB098512.1 ku54d11.y1 Strongyloides ratti PA female naive pAMP1 v1 Strongyloides ratti cDNA 5' similar to TR:O17835 O17835 PYRUVATE KINASE ;, mRNA sequence. 64 5e-10 2
dna update	2004. 5.28
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (Q54RF5) RecName: Full=Pyruvate kinase; Short=PK; ... 442 e-122 AB050726_1(AB050726\|pid:none) Toxoplasma gondii pk mRNA for pyru... 228 4e-58 AL844505_263(AL844505\|pid:none) Plasmodium falciparum 3D7 chromo... 227 6e-58 AY608682_1(AY608682\|pid:none) Achlya bisexualis pyruvate kinase ... 209 2e-52 AB005234_16(AB005234\|pid:none) Arabidopsis thaliana genomic DNA,... 204 4e-51 AE015927_2237(AE015927\|pid:none) Clostridium tetani E88, complet... 204 6e-51 FB912628_1(FB912628\|pid:none) Sequence 131901 from Patent WO2008... 204 7e-51 FB912638_1(FB912638\|pid:none) Sequence 131911 from Patent WO2008... 204 7e-51 EU964800_1(EU964800\|pid:none) Zea mays clone 281612 pyruvate kin... 204 7e-51 FB912634_1(FB912634\|pid:none) Sequence 131907 from Patent WO2008... 204 7e-51
protein update	2009. 5.12
PSORT	psg: 0.75 gvh: 0.45 alm: 0.33 top: 0.53 tms: 0.00 mit: 0.46 mip: 0.05 nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 60.0 %: mitochondrial 28.0 %: cytoplasmic 8.0 %: nuclear 4.0 %: cytoskeletal >> prediction for CFC605 is mit
5' end seq. ID	CFC605F
5' end seq.	>CFC605F.Seq TTTTTTAACAAATACATATACATATACATTAAATAATGGCCACATTATCACGTAATTTAC GTTTATCATTAGATACACCAACCTCAACTTTTGTTAGAACCAAAATTGTTTGTACAATTG GTCCAAAAACAATGAGTGAAGAAGCTTTAATTAAATTAATCGAAACTGGTATGAACGTTT GTAGACTCAACTTTTCACATGGTACTCATGATTATCATGGTCAAGTTATTAAAAATGTTA GATCAGCAATGGAGAAAACAGGTAAAATTATTGCTATTATGTTAGATACTAAAGGTCCAG AAATTAGAACTGGTAAAATTGAAGATCGTTGTGGTTATGTTGATTTATTCGTTGGCCAAG AAATCCTCGTTGATACCAATATGAATCAACCAGGTACTTCATTTAGAATTTCAATCGATT ATAAAGGTTTATTAGATTCAGTTAAAGTTGGTGGTTACATTTTAATTGCTGATGGTGTAA TTTCATTATCTATTACTGCAGTTGAAAAAGAAAAAGGTCATGTTGTTTGTAGAGTTAATA ATAATTCACGTCTTGGTGAAAATAAAAATGTACATTTACCA----------
Length of 5' end seq.	581
3' end seq. ID	CFC605Z
3' end seq.	>CFC605Z.Seq ----------TTCGTCGCTCAAAAGATGATCGTTAGTAAATGTAATGCCGCCGGTAAACC AGTAATTACCGCCACTCAAATGTTGGAATCAATGATCAAGAATCCAAGACCAACCCGTGC TGAAGCTACCGATGTTGCCAATGCCGTTTTAGATGGTTCCGATTGTGTTATGCTTTCAGG TGAAACCGCAAGCGGTGATTACCCATACGAAGCCGTAGACATTATGGCAAAGATCTGTAG AGAAGCAGAGTTGGTAGAATCTTCAACTGATTATCAAACTTTATTCGCTGCCCTTAAATT ATCATCAGCCAAACCAGTCAGCATTGCTGAAACCGTTGCTTCTTACGCCGTCGCAACCGC TATCGATTTGAAGGCTGATCTCATCATCACACTCACTGAAACCGGTCTCACTGCTCGTCT CGTCAGTAAATATCGTCCATCCATTCCAATCATTGCCGTCACTTCATGGTCATACACTGT TAAACATTTACTCGCCACTAGAGGTGCCATTCCATTCTTGGTAGAATCATTGGTCGGCAC TGATAAACTCGTTGAATCTTGTCTCGAATATGCTATGAAACATAACTTATGTAAAAAAGG TTCAAGAGTTGTCATTGTTTCTGGTGTTATGGAAGGTGTACCAGGTAAAACCAACAGTTT AAGAGTTCTTACCGTTGGTGAATCAATCAAAGATTTAAAGAAAAAATAAAAATATAGCCA TAATTTTAATAAGCGCAGA
Length of 3' end seq.	729
Connected seq. ID	CFC605P
Connected seq.	>CFC605P.Seq TTTTTTAACAAATACATATACATATACATTAAATAATGGCCACATTATCACGTAATTTAC GTTTATCATTAGATACACCAACCTCAACTTTTGTTAGAACCAAAATTGTTTGTACAATTG GTCCAAAAACAATGAGTGAAGAAGCTTTAATTAAATTAATCGAAACTGGTATGAACGTTT GTAGACTCAACTTTTCACATGGTACTCATGATTATCATGGTCAAGTTATTAAAAATGTTA GATCAGCAATGGAGAAAACAGGTAAAATTATTGCTATTATGTTAGATACTAAAGGTCCAG AAATTAGAACTGGTAAAATTGAAGATCGTTGTGGTTATGTTGATTTATTCGTTGGCCAAG AAATCCTCGTTGATACCAATATGAATCAACCAGGTACTTCATTTAGAATTTCAATCGATT ATAAAGGTTTATTAGATTCAGTTAAAGTTGGTGGTTACATTTTAATTGCTGATGGTGTAA TTTCATTATCTATTACTGCAGTTGAAAAAGAAAAAGGTCATGTTGTTTGTAGAGTTAATA ATAATTCACGTCTTGGTGAAAATAAAAATGTACATTTACCA----------TTCGTCGCT CAAAAGATGATCGTTAGTAAATGTAATGCCGCCGGTAAACCAGTAATTACCGCCACTCAA ATGTTGGAATCAATGATCAAGAATCCAAGACCAACCCGTGCTGAAGCTACCGATGTTGCC AATGCCGTTTTAGATGGTTCCGATTGTGTTATGCTTTCAGGTGAAACCGCAAGCGGTGAT TACCCATACGAAGCCGTAGACATTATGGCAAAGATCTGTAGAGAAGCAGAGTTGGTAGAA TCTTCAACTGATTATCAAACTTTATTCGCTGCCCTTAAATTATCATCAGCCAAACCAGTC AGCATTGCTGAAACCGTTGCTTCTTACGCCGTCGCAACCGCTATCGATTTGAAGGCTGAT CTCATCATCACACTCACTGAAACCGGTCTCACTGCTCGTCTCGTCAGTAAATATCGTCCA TCCATTCCAATCATTGCCGTCACTTCATGGTCATACACTGTTAAACATTTACTCGCCACT AGAGGTGCCATTCCATTCTTGGTAGAATCATTGGTCGGCACTGATAAACTCGTTGAATCT TGTCTCGAATATGCTATGAAACATAACTTATGTAAAAAAGGTTCAAGAGTTGTCATTGTT TCTGGTGTTATGGAAGGTGTACCAGGTAAAACCAACAGTTTAAGAGTTCTTACCGTTGGT GAATCAATCAAAGATTTAAAGAAAAAATAAAAATATAGCCATAATTTTAATAAGCGCAGA
Length of connected seq.	1310
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas