>CFC604 (CFC604Q) /CSM/CF/CFC6-A/CFC604Q.Seq.d/
ATATATATATAAATGGAGGCCGATCCGAGCTTAGTTTCTTATGCAGACCAACATGGTGAA
TGGGAAACTCGTGAAATTTCAATCTTTGGTGTTGTAAAAAGTTTTATTTCTCAATTATCA
ATTGGTCAAGAGTTGACAAAAGTTAGTATGCCATCAATTTTTTTAATGCCATATTCAATT
TTAGAGTTAGCAGCATCAAGACATCTTAAATATATACACCTTTTAATTTCAGCCCAACAC
GAAGAAGATCCATTAAAAAGAATGGCAATTATTATTCAATACTTTTTTTCTTGTGTTAGA
GATGGAAATTTCCAAAAAAAAACCATATAATGCATTATTAGGAGAAGTTCATAAATGTTT
TGTCAAATATCCATCATATGATGGTCAATCAACATCTACTGCACAATTTATAGGTGAACA
AGTTACACATCATCCACCATTAACAGCATTCAATATTACTACTTCAGAAGGAATTACTTT
AGATTGTAATGTACAATTTTCAGCTAAATTCCATATGAACTCAGTATCAGTTGTTACAAC
TGGTGCAGTTAAAATTTGTATTCCAGTTAAAGTTGGTAATCAAATCATTAAAGAXXXXXX
XXXX

yiykwrpira*flmqtnmvngklvkfqslvl*kvlflnyqlvks*qklvchqff*chiqf
*s*qhqdilniytf*fqpntkkih*KEWQLLFNTFFLVLEMEISKKKPYNALLGEVHKCF
VKYPSYDGQSTSTAQFIGEQVTHHPPLTAFNITTSEGITLDCNVQFSAKFHMNSVSVVTT
GAVKICIPVKVGNQIIK---

Frame A:
iyi*meadpslvsyadqhgewetreisifgvvksfisqlsigqeltkvsmpsiflmpysi
lelaasrhlkyihllisaqheedplkrmaiiiqyffscvrdgnfqkkti*ciirrss*mf
cqisii*wsiniyctiyr*tsytsstinsiqyyyfrrnyfrl*ctifs*ipyelsiscyn
wcs*nlyss*sw*snh*---


Frame B:
yiykwrpira*flmqtnmvngklvkfqslvl*kvlflnyqlvks*qklvchqff*chiqf
*s*qhqdilniytf*fqpntkkih*KEWQLLFNTFFLVLEMEISKKKPYNALLGEVHKCF
VKYPSYDGQSTSTAQFIGEQVTHHPPLTAFNITTSEGITLDCNVQFSAKFHMNSVSVVTT
GAVKICIPVKVGNQIIK---


Frame C:
iyinggrselsflcrptw*mgns*nfnlwcckkfyfsiinwsrvdks*yainffnaifnf
rvssikts*iytpfnfsptrrrsikkngnyysilfflc*rwkfpkknhimhy*ekfinvl
snihhmmvnqhllhnl*vnklhiihh*qhsilllqkell*ivmynfqlnsi*tqyqllql
vqlkfvfqlklvikslk---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFC604 (CFC604Q) /CSM/CF/CFC6-A/CFC604Q.Seq.d/                       1041   0.0
VFF842 (VFF842Q) /CSM/VF/VFF8-B/VFF842Q.Seq.d/                       1031   0.0
AFB428 (AFB428Q) /CSM/AF/AFB4-B/AFB428Q.Seq.d/                       1027   0.0
SSI312 (SSI312Q) /CSM/SS/SSI3-A/SSI312Q.Seq.d/                       1025   0.0
CFD144 (CFD144Q) /CSM/CF/CFD1-B/CFD144Q.Seq.d/                       1019   0.0
VFM332 (VFM332Q) /CSM/VF/VFM3-B/VFM332Q.Seq.d/                       1015   0.0
VFA444 (VFA444Q) /CSM/VF/VFA4-B/VFA444Q.Seq.d/                       1007   0.0
AFI558 (AFI558Q) /CSM/AF/AFI5-C/AFI558Q.Seq.d/                        959   0.0
VFL579 (VFL579Q) /CSM/VF/VFL5-D/VFL579Q.Seq.d/                        944   0.0
VFO254 (VFO254Q) /CSM/VF/VFO2-C/VFO254Q.Seq.d/                        916   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL590154|AL590154.18 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP71-74M9.    36   0.001  11
BG227246|BG227246.1 kq04c02.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to WP:F11C3.3 CE09349 UNC-54: MYOSIN HEAVY CHAIN ;, mRNA sequence.    52   0.010  1
BG227040|BG227040.1 kp95h10.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to WP:F11C3.3 CE09349 UNC-54: MYOSIN HEAVY CHAIN ;, mRNA sequence.    52   0.010  1
AC004746|AC004746.1 Homo sapiens BAC clone CTA-290G13 from 7q21, complete sequence.    32   0.020  10
AL596328|AL596328.5 Human DNA sequence *** SEQUENCING CANCELLED *** from clone  RP11-151G10.    34   0.022  14
AC018976|AC018976.7 Homo sapiens chromosome 10 clone RP11-384N23, complete sequence.    36   0.037  6
AL445188|AL445188.5 Human DNA sequence from clone RP11-260E14 on chromosome 13 Contains  STSs and GSSs.    42   0.075  7
AL359208|AL359208.14 Human DNA sequence from clone RP11-320N6 on chromosome 13.    34   0.081  8
CG975872|CG975872.1 MBEAT91TF mth2 Medicago truncatula genomic clone 15P14, genomic survey sequence.    34   0.10   3
AP001489|AP001489.3 Homo sapiens genomic DNA, chromosome 18q12 clone:RP11-715J4, WORKING DRAFT SEQUENCE, 12 unordered pieces.    42   0.11   6

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54RM1) RecName: Full=Oxysterol-binding protein 7; AltName: Ful...   206   4e-52
AY809883_1(AY809883|pid:none) Schistosoma japonicum SJCHGC04472 ...    50   6e-12
AY051614_1(AY051614|pid:none) Drosophila melanogaster GH25973 fu...    69   1e-10
AE014297_2885(AE014297|pid:none) Drosophila melanogaster chromos...    69   1e-10
AE014297_2881(AE014297|pid:none) Drosophila melanogaster chromos...    69   1e-10
DQ481665_2(DQ481665|pid:none) Takifugu rubripes HoxBa gene clust...    45   1e-09
BC083531_1(BC083531|pid:none) Danio rerio oxysterol binding prot...    43   2e-09
EU025708_17(EU025708|pid:none) Salmo salar EAP30 subunit of ELL ...    48   2e-09
BC090724_1(BC090724|pid:none) Danio rerio oxysterol binding prot...    43   2e-09
DQ630461_1(DQ630461|pid:none) Oncorhynchus mykiss OORP mRNA, com...    48   3e-09

 psg: 0.92  gvh: 0.35  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.03  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 28.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for CFC604 is cyt

>CFC604F.Seq
ATATATATATAAATGGAGGCCGATCCGAGCTTAGTTTCTTATGCAGACCAACATGGTGAA
TGGGAAACTCGTGAAATTTCAATCTTTGGTGTTGTAAAAAGTTTTATTTCTCAATTATCA
ATTGGTCAAGAGTTGACAAAAGTTAGTATGCCATCAATTTTTTTAATGCCATATTCAATT
TTAGAGTTAGCAGCATCAAGACATCTTAAATATATACACCTTTTAATTTCAGCCCAACAC
GAAGAAGATCCATTAAAAAGAATGGCAATTATTATTCAATACTTTTTTTCTTGTGTTAGA
GATGGAAATTTCCAAAAAAAAACCATATAATGCATTATTAGGAGAAGTTCATAAATGTTT
TGTCAAATATCCATCATATGATGGTCAATCAACATCTACTGCACAATTTATAGGTGAACA
AGTTACACATCATCCACCATTAACAGCATTCAATATTACTACTTCAGAAGGAATTACTTT
AGATTGTAATGTACAATTTTCAGCTAAATTCCATATGAACTCAGTATCAGTTGTTACAAC
TGGTGCAGTTAAAATTTGTATTCCAGTTAAAGTTGGTAATCAAATCATTAAAGA------
----