CFC603
Library CF
(Link to library)
Clone ID CFC603
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15329-1
Original site URL
Representative seq. ID CFC603Z
(Link to Original site)
Representative DNA sequence
>CFC603 (CFC603Q) /CSM/CF/CFC6-A/CFC603Q.Seq.d/
XXXXXXXXXXCATATGGTACNAGTTATTGAAGGAACCATTAGTTTAAATAATGAAAAGGG
TAAGAAAAAAATTCAATCCANTATCATTGTTACGTCANATCCTTGGNAATTTAAAGGATG
GTGATTCACCAAAAGNAGCTATCATCATCTATGGTTNACCATTCCATTTCAGTGGTTGGA
GAAAGTATATCCNATTGGAAGGTTTACGNAAACTCGTTGGTAATGCTATGATGGCTCAAT
GGCAAGATCCATTAATTCAAAAACANTTTGGTATTGAAATTCCTGAAGGTAATCGTTTAA
GNGAAGCCTNATNCCNATTAAAAAGNGCTGTCTCTCANAAGAAAAAAGCAGACTATGATA
GATCAGTTCGTTCAGAAAGNACTTTATTTGAAAATAGATGCTG
sequence update 2001. 6. 1
Translated Amino Acid sequence
---iwyxllkeplv*IMKRVRKKFNPXSLLRXILGNLKDGDSPKXAIIIYGXPFHFSGWR
KYIXLEGLRKLVGNAMMAQWQDPLIQKXFGIEIPEGNRLXEAXXXLKXAVSXKKKADYDR
SVRSEXTLFENRC


Translated Amino Acid sequence (All Frames)
Frame A:
---iwyxllkeplv*IMKRVRKKFNPXSLLRXILGNLKDGDSPKXAIIIYGXPFHFSGWR
KYIXLEGLRKLVGNAMMAQWQDPLIQKXFGIEIPEGNRLXEAXXXLKXAVSXKKKADYDR
SVRSEXTLFENRC


Frame B:
---ygtsy*rnh*fk**kg*eknsixyhcyvxslxi*rmvihqkxlsssmvxhsisvvge
sisxwkvyxnslvml*wlngkih*fknxlvlkflkviv*xkpxxx*kxlslxrkkqtmid
qfvqkxlylkida


Frame C:
---mvxviegtislnnekgkkkiqsxiivtsxpwxfkgw*ftkxsyhhlwxtipfqwlek
vypigrftxtrw*cydgsmarsinsktxwy*ns*r*sfkxslxpikkxclsxeksrl**i
ssfrkxfi*k*ml


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFC603 (CFC603Q) /CSM/CF/CFC6-A/CFC603Q.Seq.d/ 642 0.0
SLF309 (SLF309Q) /CSM/SL/SLF3-A/SLF309Q.Seq.d/ 549 e-155
SFD556 (SFD556Q) /CSM/SF/SFD5-C/SFD556Q.Seq.d/ 549 e-155
CHD235 (CHD235Q) /CSM/CH/CHD2-B/CHD235Q.Seq.d/ 541 e-153
SSK305 (SSK305Q) /CSM/SS/SSK3-A/SSK305Q.Seq.d/ 535 e-151
SFD704 (SFD704Q) /CSM/SF/SFD7-A/SFD704Q.Seq.d/ 535 e-151
CFK411 (CFK411Q) /CSM/CF/CFK4-A/CFK411Q.Seq.d/ 535 e-151
AFE868 (AFE868Q) /CSM/AF/AFE8-C/AFE868Q.Seq.d/ 535 e-151
VFD239 (VFD239Q) /CSM/VF/VFD2-B/VFD239Q.Seq.d/ 533 e-151
SFJ114 (SFJ114Q) /CSM/SF/SFJ1-A/SFJ114Q.Seq.d/ 533 e-151

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BX323087|BX323087.5 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-212J22. 42 0.41 2
AC074076|AC074076.1 Homo sapiens chromosome 1 clone RP11-172A5 map 1, LOW-PASS SEQUENCE SAMPLING. 34 4.1 4
BX294127|BX294127.7 Zebrafish DNA sequence from clone DKEYP-35D6 in linkage group 23. 42 6.2 1
AB091576|AB091576.1 Crassostrea gigas DNA, microsatellite locus TNFRI-Crgi32. 42 6.2 1
AC146703|AC146703.11 Medicago truncatula clone mth2-22o12, WORKING DRAFT SEQUENCE, 30 unordered pieces. 42 6.2 1
BX957220|BX957220.1 Methanococcus maripaludis strain S2, complete sequence; segment 2/5. 42 6.2 1
BS000101|BS000101.1 Pan troglodytes chromosome 22 clone:PTB-115B20, map 22, complete sequences. 42 6.2 1
AC145157|AC145157.10 Medicago truncatula clone mth2-13a15, WORKING DRAFT SEQUENCE, 2 unordered pieces. 42 6.2 1
AP001693|AP001693.1 Homo sapiens genomic DNA, chromosome 21q, section 37/105. 42 6.2 1
AC145470|AC145470.6 Medicago truncatula clone mth2-6m8, WORKING DRAFT SEQUENCE, 2 unordered pieces. 42 6.2 1
dna update 2004. 5.28
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AM180355_666(AM180355|pid:none) Clostridium difficile 630 comple... 32 8.8

protein update 2008.12.24
PSORT

psg: 0.68 gvh: 0.35 alm: 0.52 top: 0.53 tms: 0.00 mit: 0.45 mip: 0.04
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

68.0 %: mitochondrial
16.0 %: nuclear
8.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: plasma membrane

>> prediction for CFC603 is mit

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CFC603Z
3' end seq.
>CFC603Z.Seq
----------CATATGGTACNAGTTATTGAAGGAACCATTAGTTTAAATAATGAAAAGGG
TAAGAAAAAAATTCAATCCANTATCATTGTTACGTCANATCCTTGGNAATTTAAAGGATG
GTGATTCACCAAAAGNAGCTATCATCATCTATGGTTNACCATTCCATTTCAGTGGTTGGA
GAAAGTATATCCNATTGGAAGGTTTACGNAAACTCGTTGGTAATGCTATGATGGCTCAAT
GGCAAGATCCATTAATTCAAAAACANTTTGGTATTGAAATTCCTGAAGGTAATCGTTTAA
GNGAAGCCTNATNCCNATTAAAAAGNGCTGTCTCTCANAAGAAAAAAGCAGACTATGATA
GATCAGTTCGTTCAGAAAGNACTTTATTTGAAAATAGATGCTG
Length of 3' end seq. 393
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -