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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFC602
Library CF
(Link to library)
Clone ID CFC602
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16240-1
Original site URL
Representative seq. ID CFC602P
(Link to Original site)
Representative DNA sequence 
>CFC602 (CFC602Q) /CSM/CF/CFC6-A/CFC602Q.Seq.d/
GGAATATACTCCCAAATCAATAATATGAAATTAATAATATTAATATTTATTATTATTTTA
ATAAACTATGTTTTTGGTCAATCTAGTGATGATGATGGTAGATTAAGACCAATACCTCAA
CAATTAATAATAAGAAATTTTAAACCTGATCGTAATCCAGATTTTGGAATCCGATTAAGT
GATGATCTTGTAACTGGTATTATGCAACCAACCTTGGGAGATGATAAAAGACCAAAATAT
TGTTGTGGCGAAAATCCTGTCGTTGATGATCAAGGAGTTTTAATTGTAAATGATGAACAA
TCCTTTAATAAATGGTTCAATAGTGATGATCTTTGTTCAAATTATTTTTTAAGTTATCAA
TTAGATCTAGATCTTTGGGATAAATTTTAATATAATAGGTGGTGGTGGACCATTTGCACC
AACTGATGGTGTTGGATTTGGTGACCCTAATCTATTCCCTGAGTATGCAAGTGATCGATT
CAATCAGTATCATTGTTTTGAGCTTCATCTCTCATATATTCCACTCGATGAATATAATGA
CTTTTTCCGTTTTTCAATTATGGGTGAAATTTGGGTTTTCTTCAATAATACTTTAATAGC
TGATCAAGCTGGTCAATCAAATGGATTTTCAGGCTCAGTTAATTTCTATCCAAATACAAT
TGATGGTGTTGTTTACAATGATGAAAATTXXXXXXXXXXGAAAATAAAACAATTTGTGAT
GACCTTAATGCATGTACTATTGACACCTGTGATGATTTATTAGGTTGTTCACATGAAATG
ATTCCAAATTGTCAATGTAACTCTACAACTTGTTTCACTGAAGATTTATGTTATCCAAAG
TATTGTTCTGGTGATCTTTGTTTAACAATTCCAATTGATTGTGCAAATTTAGAACCAGAT
TGTCCAACATCTGTATGTTTTGATGGTCAATGTTCAGTTTGTGAAGTTGATTCAAGCTCT
GTTGATATTTCAACCACTGGTATAGTTACAACCACTGGCATTTCTATATCTACAATTGGT
CCTGTATCAACAACTGATTTATCAATTTCAACAATTGGTTTTGTAACTACCACTGGTGTA
ACAGCTTCAACGATTGGCATTGTTACTACAACTGGTTTCATAACTTCAACAACTTCAACA
ACTGGTTTATTAACCACTGCTTCAACAACCTCAACAACTGGTATATTAACCACTGCTTCA
TCAACTTCAACAACGGGAATACCAACAATTTCAACATCAATTTCGACATCAGGAGCAACA
GGAACAACAACAACCCCAACAACAGGTTCCACTGGAACAATACCACCTATTGACCTTGCA
AAATGTAGTCATGATTCTTGCCCACCTCATTATTACTGTTATCAATTAACAAATTCATAC
ACTTGTATATCAAAAGAATTTTATAATAATTGGAACCGAAAGATTAATATTATTTTATTA
AAATAAAAACAAAAATAAATAAAAAACCAAATTTA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
eytpksii*n**y*ylllf**tmflvnlvmmmvd*dqylnn***eilnliviqilesd*v
mil*lvlcnqpwemikdqnivvakilslmikef*l*mmnnplingsivmifvqiif*vin
*i*IFGINFNIIGGGGPFAPTDGVGFGDPNLFPEYASDRFNQYHCFELHLSYIPLDEYND
FFRFSIMGEIWVFFNNTLIADQAGQSNGFSGSVNFYPNTIDGVVYNDEN---

---ENKTICDDLNACTIDTCDDLLGCSHEMIPNCQCNSTTCFTEDLCYPKYCSGDLCLTI
PIDCANLEPDCPTSVCFDGQCSVCEVDSSSVDISTTGIVTTTGISISTIGPVSTTDLSIS
TIGFVTTTGVTASTIGIVTTTGFITSTTSTTGLLTTASTTSTTGILTTASSTSTTGIPTI
STSISTSGATGTTTTPTTGSTGTIPPIDLAKCSHDSCPPHYYCYQLTNSYTCISKEFYNN
WNRKINIILLK*kqk*iknqi
Translated Amino Acid sequence (All Frames) 
Frame A:
giysqinnmkliilifiiilinyvfgqssdddgrlrpipqqliirnfkpdrnpdfgirls
ddlvtgimqptlgddkrpkyccgenpvvddqgvlivndeqsfnkwfnsddlcsnyflsyq
ldldlwdkf*ynrwwwtictn*wcwiw*p*sip*vck*siqsvslf*assliystr*i**
lfpffnyg*nlgflq*yfns*sswsikwifrls*flskyn*wcclq**k---

---ENKTICDDLNACTIDTCDDLLGCSHEMIPNCQCNSTTCFTEDLCYPKYCSGDLCLTI
PIDCANLEPDCPTSVCFDGQCSVCEVDSSSVDISTTGIVTTTGISISTIGPVSTTDLSIS
TIGFVTTTGVTASTIGIVTTTGFITSTTSTTGLLTTASTTSTTGILTTASSTSTTGIPTI
STSISTSGATGTTTTPTTGSTGTIPPIDLAKCSHDSCPPHYYCYQLTNSYTCISKEFYNN
WNRKINIILLK*kqk*iknqi

Frame B:
eytpksii*n**y*ylllf**tmflvnlvmmmvd*dqylnn***eilnliviqilesd*v
mil*lvlcnqpwemikdqnivvakilslmikef*l*mmnnplingsivmifvqiif*vin
*i*IFGINFNIIGGGGPFAPTDGVGFGDPNLFPEYASDRFNQYHCFELHLSYIPLDEYND
FFRFSIMGEIWVFFNNTLIADQAGQSNGFSGSVNFYPNTIDGVVYNDEN---

---kikqfvmtlmhvlltpvmiy*vvhmk*fqivnvtlqlvslkiyviqsivlvifv*qf
qlivqi*nqivqhlyvlmvnvqfvkliqallifqplv*lqplaflylqlvlyqqliyqfq
qlvl*lplv*qlqrlalllqlvs*lqqlqqlvy*pllqqpqqlvy*pllhqlqqreyqqf
qhqfrhqeqqeqqqpqqqvpleqyhlltlqnvvmilahliitvin*qihtlvyqknfiii
gterlilfy*nknknk*ktkf

Frame C:
nilpnq*yeinniniyyyfnklcfwsi****w*iktntstinnkkf*t*s*srfwnpik*
*scnwyyatnlgr**ktkillwrkscr**srsfnck**til**mvq***slfklffklsi
rsrslg*ili**vvvdhlhqlmvldlvtliyslsmqvidsisiivlsfishifhsmnimt
fsvfqlwvkfgfssiil**liklvnqmdfqaqlisiqiqlmvlftmmki---

---k*nnl**p*cmyy*hl**firlft*ndsklsm*lynlfh*rfmlskvlfw*slfnns
n*lckfrtrlsnicmf*wsmfsl*s*fklc*yfnhwysynhwhfyiynwscinn*finfn
nwfcnyhwcnsfndwhcyynwfhnfnnfnnwfinhcfnnlnnwyinhcfinfnngntnnf
ninfdirsnrnnnnpnnrfhwnntty*pckm*s*flptsllllsinkfihlyikril**l
epkd*yyfikiktkinkkpnl
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFC602 (CFC602Q) /CSM/CF/CFC6-A/CFC602Q.Seq.d/                       2664   0.0
CFJ653 (CFJ653Q) /CSM/CF/CFJ6-C/CFJ653Q.Seq.d/                       1419   0.0
AFO774 (AFO774Q) /CSM/AF/AFO7-D/AFO774Q.Seq.d/                       1405   0.0
CFJ591 (CFJ591Q) /CSM/CF/CFJ5-D/CFJ591Q.Seq.d/                       1402   0.0
CFH416 (CFH416Q) /CSM/CF/CFH4-A/CFH416Q.Seq.d/                       1400   0.0
SFL410 (SFL410Q) /CSM/SF/SFL4-A/SFL410Q.Seq.d/                       1396   0.0
CHH752 (CHH752Q) /CSM/CH/CHH7-C/CHH752Q.Seq.d/                       1394   0.0
SFE196 (SFE196Q) /CSM/SF/SFE1-D/SFE196Q.Seq.d/                       1392   0.0
SFK654 (SFK654Q) /CSM/SF/SFK6-C/SFK654Q.Seq.d/                       1380   0.0
SFF562 (SFF562Q) /CSM/SF/SFF5-C/SFF562Q.Seq.d/                       1380   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116963|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    36   5e-10  20
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 2/4.    38   6e-08  21
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    36   1e-07  19
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    36   3e-07  23
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    34   1e-06  19
AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence.    32   2e-06  15
AC114263|AC114263.2 Dictyostelium discoideum chromosome 2 map 215673-367476 strain AX4, complete sequence.    36   2e-06  14
AC117072|AC117072.3 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    38   4e-06  16
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    36   5e-06  15
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    34   2e-05  13
dna update 2004. 5.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q1ZXC5) RecName: Full=Protein psiC; Flags: Precursor;                 54   2e-12
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor;                 51   3e-12
(Q54FD8) RecName: Full=Protein psiD; Flags: Precursor;                 64   1e-11
(Q54C31) RecName: Full=Protein psiR; Flags: Precursor;                 57   6e-09
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor;                 63   3e-08
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor;                 50   2e-04
S44208(S44208) extracellular matrix protein B - Dictyostelium mi...    47   0.002
AC117072_61(AC117072|pid:none) Dictyostelium discoideum chromoso...    45   0.009
(P11976) RecName: Full=Prestalk protein; AltName: Full=Extracell...    44   0.011
A27020(A27020)DIF-induced prestalk pDd63 protein precursor - sli...    44   0.011
protein update 2009. 5.12
PSORT 

 psg: 0.90  gvh: 0.39  alm: 0.37  top: 0.27  tms: 0.00  mit: 0.14  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for CFC602 is cyt
5' end seq. ID CFC602F
5' end seq. 
>CFC602F.Seq
GGAATATACTCCCAAATCAATAATATGAAATTAATAATATTAATATTTATTATTATTTTA
ATAAACTATGTTTTTGGTCAATCTAGTGATGATGATGGTAGATTAAGACCAATACCTCAA
CAATTAATAATAAGAAATTTTAAACCTGATCGTAATCCAGATTTTGGAATCCGATTAAGT
GATGATCTTGTAACTGGTATTATGCAACCAACCTTGGGAGATGATAAAAGACCAAAATAT
TGTTGTGGCGAAAATCCTGTCGTTGATGATCAAGGAGTTTTAATTGTAAATGATGAACAA
TCCTTTAATAAATGGTTCAATAGTGATGATCTTTGTTCAAATTATTTTTTAAGTTATCAA
TTAGATCTAGATCTTTGGGATAAATTTTAATATAATAGGTGGTGGTGGACCATTTGCACC
AACTGATGGTGTTGGATTTGGTGACCCTAATCTATTCCCTGAGTATGCAAGTGATCGATT
CAATCAGTATCATTGTTTTGAGCTTCATCTCTCATATATTCCACTCGATGAATATAATGA
CTTTTTCCGTTTTTCAATTATGGGTGAAATTTGGGTTTTCTTCAATAATACTTTAATAGC
TGATCAAGCTGGTCAATCAAATGGATTTTCAGGCTCAGTTAATTTCTATCCAAATACAAT
TGATGGTGTTGTTTACAATGATGAAAATT----------
Length of 5' end seq. 689
3' end seq. ID CFC602Z
3' end seq. 
>CFC602Z.Seq
----------GAAAATAAAACAATTTGTGATGACCTTAATGCATGTACTATTGACACCTG
TGATGATTTATTAGGTTGTTCACATGAAATGATTCCAAATTGTCAATGTAACTCTACAAC
TTGTTTCACTGAAGATTTATGTTATCCAAAGTATTGTTCTGGTGATCTTTGTTTAACAAT
TCCAATTGATTGTGCAAATTTAGAACCAGATTGTCCAACATCTGTATGTTTTGATGGTCA
ATGTTCAGTTTGTGAAGTTGATTCAAGCTCTGTTGATATTTCAACCACTGGTATAGTTAC
AACCACTGGCATTTCTATATCTACAATTGGTCCTGTATCAACAACTGATTTATCAATTTC
AACAATTGGTTTTGTAACTACCACTGGTGTAACAGCTTCAACGATTGGCATTGTTACTAC
AACTGGTTTCATAACTTCAACAACTTCAACAACTGGTTTATTAACCACTGCTTCAACAAC
CTCAACAACTGGTATATTAACCACTGCTTCATCAACTTCAACAACGGGAATACCAACAAT
TTCAACATCAATTTCGACATCAGGAGCAACAGGAACAACAACAACCCCAACAACAGGTTC
CACTGGAACAATACCACCTATTGACCTTGCAAAATGTAGTCATGATTCTTGCCCACCTCA
TTATTACTGTTATCAATTAACAAATTCATACACTTGTATATCAAAAGAATTTTATAATAA
TTGGAACCGAAAGATTAATATTATTTTATTAAAATAAAAACAAAAATAAATAAAAAACCA
AATTTA
Length of 3' end seq. 776
Connected seq. ID CFC602P
Connected seq. 
>CFC602P.Seq
GGAATATACTCCCAAATCAATAATATGAAATTAATAATATTAATATTTATTATTATTTTA
ATAAACTATGTTTTTGGTCAATCTAGTGATGATGATGGTAGATTAAGACCAATACCTCAA
CAATTAATAATAAGAAATTTTAAACCTGATCGTAATCCAGATTTTGGAATCCGATTAAGT
GATGATCTTGTAACTGGTATTATGCAACCAACCTTGGGAGATGATAAAAGACCAAAATAT
TGTTGTGGCGAAAATCCTGTCGTTGATGATCAAGGAGTTTTAATTGTAAATGATGAACAA
TCCTTTAATAAATGGTTCAATAGTGATGATCTTTGTTCAAATTATTTTTTAAGTTATCAA
TTAGATCTAGATCTTTGGGATAAATTTTAATATAATAGGTGGTGGTGGACCATTTGCACC
AACTGATGGTGTTGGATTTGGTGACCCTAATCTATTCCCTGAGTATGCAAGTGATCGATT
CAATCAGTATCATTGTTTTGAGCTTCATCTCTCATATATTCCACTCGATGAATATAATGA
CTTTTTCCGTTTTTCAATTATGGGTGAAATTTGGGTTTTCTTCAATAATACTTTAATAGC
TGATCAAGCTGGTCAATCAAATGGATTTTCAGGCTCAGTTAATTTCTATCCAAATACAAT
TGATGGTGTTGTTTACAATGATGAAAATT----------GAAAATAAAACAATTTGTGAT
GACCTTAATGCATGTACTATTGACACCTGTGATGATTTATTAGGTTGTTCACATGAAATG
ATTCCAAATTGTCAATGTAACTCTACAACTTGTTTCACTGAAGATTTATGTTATCCAAAG
TATTGTTCTGGTGATCTTTGTTTAACAATTCCAATTGATTGTGCAAATTTAGAACCAGAT
TGTCCAACATCTGTATGTTTTGATGGTCAATGTTCAGTTTGTGAAGTTGATTCAAGCTCT
GTTGATATTTCAACCACTGGTATAGTTACAACCACTGGCATTTCTATATCTACAATTGGT
CCTGTATCAACAACTGATTTATCAATTTCAACAATTGGTTTTGTAACTACCACTGGTGTA
ACAGCTTCAACGATTGGCATTGTTACTACAACTGGTTTCATAACTTCAACAACTTCAACA
ACTGGTTTATTAACCACTGCTTCAACAACCTCAACAACTGGTATATTAACCACTGCTTCA
TCAACTTCAACAACGGGAATACCAACAATTTCAACATCAATTTCGACATCAGGAGCAACA
GGAACAACAACAACCCCAACAACAGGTTCCACTGGAACAATACCACCTATTGACCTTGCA
AAATGTAGTCATGATTCTTGCCCACCTCATTATTACTGTTATCAATTAACAAATTCATAC
ACTTGTATATCAAAAGAATTTTATAATAATTGGAACCGAAAGATTAATATTATTTTATTA
AAATAAAAACAAAAATAAATAAAAAACCAAATTTA
Length of connected seq. 1465
Full length Seq ID -
Full length Seq. -
Length of full length seq. -