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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFC601
Library CF
(Link to library)
Clone ID CFC601
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16368-1
Original site URL
Representative seq. ID CFC601P
(Link to Original site)
Representative DNA sequence 
>CFC601 (CFC601Q) /CSM/CF/CFC6-A/CFC601Q.Seq.d/
CTGGGGAATCAAATAATTATATATATATATAAAAATATAAAAAAAATAAAATGAGAATTT
TATATTTAGCTTCTCTTTTATTTTTAATTACATTATATCTATCACCAACTTTTGGTTGGG
GTGGTGGCAGAGATTGTGAAAGTCATCGTTCAGAATATACATGTAAATCAGATAGAAGTT
GTGCATATTTACCATTTGTATCATGTTGTGGTAAGAAAGAATTTTTCTGTGTTAATCGTG
ATCATAGAAATTGTTGTGATGATTTATCATGTGCTAAAAACACGAGAACTGGTGAAATCT
TTGAGATTTGGTCAAGTTGTAAACCACATAGAGATTTTGTACCATATCATTCACCAAATA
CAACCACATGTGAATCATTAGGTTGTGAAGCAAGAGGTATGGAATGTGAATGGGTTGAAT
CATCACCATGTTATGGAACTTCTTGTTGCCCAAGAATTCCAAGATGTGTTGGTCATCATG
GTGGCGGTCATAAATGTGACAGAATGAGATGTTCAGAAGGATTCTATTGTGAAGAACAAG
GTGGTAGTGCATGCTGCXXXXXXXXXXGTCTTGCCAATAATGTATTCCCACAACTTTGTA
AAGTTACTCAATGTCCAACTGATTTCTCTTGTAAAATGATTAGAGGTAATCCAACTTGTA
TTAAAGCAAGACCACCGGTACCACCACCACATTGCTCAACTTGTGCAGAGCTATCATCAG
CATGTAATCACGTTGGAATGATTTGTATTCAAGTACCAAGCAATTGTACCAATACTAGAT
TCCCATGTTGCCCATCTCATCCAATTTGTATTCATCCATCAACTACTGCTGCTTCAACCA
TTGCAACAACTGCATCAACTGTCGCAACTACAACCTCTGCAACTACTGCAGGTACAACAA
CTGGTGGAACTACAACTGGTGGTTCAACTTCTGATAGTAGTGCTGCTTCCTCAGCCGATA
GTAGCGCTGCCTCCTCATCACCATCAAGCAGTGCTGCTTCAAGTGCCGCTTCAAGTGAAC
CATCAAGTAGCGCCGCTTCAAGTAGTGCTCCATCCTCTGCTTCAAGTAGCGCTCCATCCT
CTGCCTCAAGTAGTGCTCCATCATCATCAGCTTCAAGTTCAGCTGCATCATCA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
gesnnyiyi*KYKKNKMRILYLASLLFLITLYLSPTFGWGGGRDCESHRSEYTCKSDRSC
AYLPFVSCCGKKEFFCVNRDHRNCCDDLSCAKNTRTGEIFEIWSSCKPHRDFVPYHSPNT
TTCESLGCEARGMECEWVESSPCYGTSCCPRIPRCVGHHGGGHKCDRMRCSEGFYCEEQG
GSACC---

---LANNVFPQLCKVTQCPTDFSCKMIRGNPTCIKARPPVPPPHCSTCAELSSACNHVGM
ICIQVPSNCTNTRFPCCPSHPICIHPSTTAASTIATTASTVATTTSATTAGTTTGGTTTG
GSTSDSSAASSADSSAASSSPSSSAASSAASSEPSSSAASSSAPSSASSSAPSSASSSAP
SSSASSSAASS
Translated Amino Acid sequence (All Frames) 
Frame A:
lgnqiiiyiyknikkik*efyi*llfyf*lhyiyhqllvgvvaeivkvivqnihvnqiev
vhiyhlyhvvvrknfsvliviieivvmiyhvlktrelvkslrfgqvvnhieilyhiihqi
qphvnh*vvkqevwnvnglnhhhvmellvaqefqdvlvimvavinvte*dvqkdsivknk
vvvha---

---vlpimyshnfvkllnvqlislvk*leviqlvlkqdhryhhhiaqlvqsyhqhvitle
*fvfkyqaivpildshvahliqfvfihqllllqplqqlhqlsqlqplqllqvqqlvelql
vvqllivvllpqpivalpphhhqavllqvplqvnhqvaplqvvlhpllqvalhplpqvvl
hhhqlqvqlhh

Frame B:
wgik*lyiyiki*kk*nenfifsfsfifnyiisitnfwlgwwqrl*kssfriym*ir*kl
cifticimlw*eriflc*s*s*kll**fimc*khenw*nl*dlvkl*tt*rfctisftky
nhm*iirl*skrygm*mg*iitmlwnfllpknskmcwsswwrs*m*qnemfrrill*rtr
w*cml---

---scq*cipttl*sysmsn*fll*nd*r*snly*skttgttttllnlcraiism*srwn
dlysstkqlyqy*ipmlpissnlyssinyccfnhcnncincrnynlcnycrynnwwnynw
wfnf***ccflsr**rcllitikqccfkcrfk*tik*rrfk*csilcfk*rsilclk*cs
iiisfkfscii

Frame C:
gesnnyiyi*KYKKNKMRILYLASLLFLITLYLSPTFGWGGGRDCESHRSEYTCKSDRSC
AYLPFVSCCGKKEFFCVNRDHRNCCDDLSCAKNTRTGEIFEIWSSCKPHRDFVPYHSPNT
TTCESLGCEARGMECEWVESSPCYGTSCCPRIPRCVGHHGGGHKCDRMRCSEGFYCEEQG
GSACC---

---LANNVFPQLCKVTQCPTDFSCKMIRGNPTCIKARPPVPPPHCSTCAELSSACNHVGM
ICIQVPSNCTNTRFPCCPSHPICIHPSTTAASTIATTASTVATTTSATTAGTTTGGTTTG
GSTSDSSAASSADSSAASSSPSSSAASSAASSEPSSSAASSSAPSSASSSAPSSASSSAP
SSSASSSAASS
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSG603 (SSG603Q) /CSM/SS/SSG6-A/SSG603Q.Seq.d/                       1122   0.0
SLG750 (SLG750Q) /CSM/SL/SLG7-C/SLG750Q.Seq.d/                       1122   0.0
SLE334 (SLE334Q) /CSM/SL/SLE3-B/SLE334Q.Seq.d/                       1122   0.0
SLE302 (SLE302Q) /CSM/SL/SLE3-A/SLE302Q.Seq.d/                       1122   0.0
SLE241 (SLE241Q) /CSM/SL/SLE2-B/SLE241Q.Seq.d/                       1122   0.0
SLC119 (SLC119Q) /CSM/SL/SLC1-A/SLC119Q.Seq.d/                       1122   0.0
SLB706 (SLB706Q) /CSM/SL/SLB7-A/SLB706Q.Seq.d/                       1122   0.0
SLB559 (SLB559Q) /CSM/SL/SLB5-C/SLB559Q.Seq.d/                       1122   0.0
SLB427 (SLB427Q) /CSM/SL/SLB4-B/SLB427Q.Seq.d/                       1122   0.0
SLB313 (SLB313Q) /CSM/SL/SLB3-A/SLB313Q.Seq.d/                       1122   0.0
own update 2001. 6.12
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

D13973|D13973.1 Dictyostelium discoideum DNA for Dp87 protein, complete cds.  1122   0.0    5
BJ170760|BJ170760.1 Physcomitrella patens subsp. patens cDNA clone:pph26m16, 3' end, single read.   190   3e-44  1
AF279135|AF279135.1 Dictyostelium discoideum spore coat structural protein SP65 (cotE) gene, complete cds.    64   5e-06  1
AC099379|AC099379.5 Rattus norvegicus clone CH230-42H5, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    42   0.10   6
AC073320|AC073320.8 Homo sapiens BAC clone RP11-306G20 from 7, complete sequence.    48   0.29   1
AC145891|AC145891.3 Pan troglodytes chromosome 7 clone RP43-20A24, WORKING DRAFT SEQUENCE, 3 unordered pieces.    48   0.29   1
AC084865|AC084865.3 Homo sapiens chromosome 7 clone RP11-437L1, complete sequence.    48   0.29   1
AC079746|AC079746.2 Homo sapiens chromosome 7 clone CTD-2353O2, WORKING DRAFT SEQUENCE, 19 unordered pieces.    48   0.29   1
AZ208391|AZ208391.1 SP_0150_A1_B06_T7A Strongylocentrotus purpuratus, purple sea urchin , sperm genomic BAC library Strongylocentrotus purpuratus genomic clone Plate=150 Col=11 Row=C, DNA sequence.    48   0.29   1
C26876|C26876.1 Oryza sativa (japonica cultivar-group) cDNA, partial sequence (C50317_1A).    36   0.64   2
dna update 2004. 5.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor;       399   e-109
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87...   392   e-108
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;...   159   2e-37
(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr...   103   1e-20
AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom...    72   3e-11
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -...    66   2e-09
(P14328) RecName: Full=Spore coat protein SP96;  &AC117075_49(AC...    66   2e-09
AC117076_50(AC117076|pid:none) Dictyostelium discoideum chromoso...    65   4e-09
AC117076_49(AC117076|pid:none) Dictyostelium discoideum chromoso...    64   9e-09
B25439(B25439)Beejin protein - slime mold (Dictyostelium discoid...    62   4e-08
protein update 2009. 5.12
PSORT 

 psg: 0.96  gvh: 0.77  alm: 0.45  top: 0.10  tms: 0.00  mit: 0.32  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: extracellular, including cell wall
	 16.0 %: cytoplasmic
	 12.0 %: endoplasmic reticulum
	  8.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: nuclear

>> prediction for CFC601 is exc
5' end seq. ID CFC601F
5' end seq. 
>CFC601F.Seq
CTGGGGAATCAAATAATTATATATATATATAAAAATATAAAAAAAATAAAATGAGAATTT
TATATTTAGCTTCTCTTTTATTTTTAATTACATTATATCTATCACCAACTTTTGGTTGGG
GTGGTGGCAGAGATTGTGAAAGTCATCGTTCAGAATATACATGTAAATCAGATAGAAGTT
GTGCATATTTACCATTTGTATCATGTTGTGGTAAGAAAGAATTTTTCTGTGTTAATCGTG
ATCATAGAAATTGTTGTGATGATTTATCATGTGCTAAAAACACGAGAACTGGTGAAATCT
TTGAGATTTGGTCAAGTTGTAAACCACATAGAGATTTTGTACCATATCATTCACCAAATA
CAACCACATGTGAATCATTAGGTTGTGAAGCAAGAGGTATGGAATGTGAATGGGTTGAAT
CATCACCATGTTATGGAACTTCTTGTTGCCCAAGAATTCCAAGATGTGTTGGTCATCATG
GTGGCGGTCATAAATGTGACAGAATGAGATGTTCAGAAGGATTCTATTGTGAAGAACAAG
GTGGTAGTGCATGCTGC----------
Length of 5' end seq. 557
3' end seq. ID CFC601Z
3' end seq. 
>CFC601Z.Seq
----------GTCTTGCCAATAATGTATTCCCACAACTTTGTAAAGTTACTCAATGTCCA
ACTGATTTCTCTTGTAAAATGATTAGAGGTAATCCAACTTGTATTAAAGCAAGACCACCG
GTACCACCACCACATTGCTCAACTTGTGCAGAGCTATCATCAGCATGTAATCACGTTGGA
ATGATTTGTATTCAAGTACCAAGCAATTGTACCAATACTAGATTCCCATGTTGCCCATCT
CATCCAATTTGTATTCATCCATCAACTACTGCTGCTTCAACCATTGCAACAACTGCATCA
ACTGTCGCAACTACAACCTCTGCAACTACTGCAGGTACAACAACTGGTGGAACTACAACT
GGTGGTTCAACTTCTGATAGTAGTGCTGCTTCCTCAGCCGATAGTAGCGCTGCCTCCTCA
TCACCATCAAGCAGTGCTGCTTCAAGTGCCGCTTCAAGTGAACCATCAAGTAGCGCCGCT
TCAAGTAGTGCTCCATCCTCTGCTTCAAGTAGCGCTCCATCCTCTGCCTCAAGTAGTGCT
CCATCATCATCAGCTTCAAGTTCAGCTGCATCATCA
Length of 3' end seq. 566
Connected seq. ID CFC601P
Connected seq. 
>CFC601P.Seq
CTGGGGAATCAAATAATTATATATATATATAAAAATATAAAAAAAATAAAATGAGAATTT
TATATTTAGCTTCTCTTTTATTTTTAATTACATTATATCTATCACCAACTTTTGGTTGGG
GTGGTGGCAGAGATTGTGAAAGTCATCGTTCAGAATATACATGTAAATCAGATAGAAGTT
GTGCATATTTACCATTTGTATCATGTTGTGGTAAGAAAGAATTTTTCTGTGTTAATCGTG
ATCATAGAAATTGTTGTGATGATTTATCATGTGCTAAAAACACGAGAACTGGTGAAATCT
TTGAGATTTGGTCAAGTTGTAAACCACATAGAGATTTTGTACCATATCATTCACCAAATA
CAACCACATGTGAATCATTAGGTTGTGAAGCAAGAGGTATGGAATGTGAATGGGTTGAAT
CATCACCATGTTATGGAACTTCTTGTTGCCCAAGAATTCCAAGATGTGTTGGTCATCATG
GTGGCGGTCATAAATGTGACAGAATGAGATGTTCAGAAGGATTCTATTGTGAAGAACAAG
GTGGTAGTGCATGCTGC----------GTCTTGCCAATAATGTATTCCCACAACTTTGTA
AAGTTACTCAATGTCCAACTGATTTCTCTTGTAAAATGATTAGAGGTAATCCAACTTGTA
TTAAAGCAAGACCACCGGTACCACCACCACATTGCTCAACTTGTGCAGAGCTATCATCAG
CATGTAATCACGTTGGAATGATTTGTATTCAAGTACCAAGCAATTGTACCAATACTAGAT
TCCCATGTTGCCCATCTCATCCAATTTGTATTCATCCATCAACTACTGCTGCTTCAACCA
TTGCAACAACTGCATCAACTGTCGCAACTACAACCTCTGCAACTACTGCAGGTACAACAA
CTGGTGGAACTACAACTGGTGGTTCAACTTCTGATAGTAGTGCTGCTTCCTCAGCCGATA
GTAGCGCTGCCTCCTCATCACCATCAAGCAGTGCTGCTTCAAGTGCCGCTTCAAGTGAAC
CATCAAGTAGCGCCGCTTCAAGTAGTGCTCCATCCTCTGCTTCAAGTAGCGCTCCATCCT
CTGCCTCAAGTAGTGCTCCATCATCATCAGCTTCAAGTTCAGCTGCATCATCA
Length of connected seq. 1123
Full length Seq ID -
Full length Seq. -
Length of full length seq. -