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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFC586
Library CF
(Link to library)
Clone ID CFC586
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16358-1
Original site URL
Representative seq. ID CFC586P
(Link to Original site)
Representative DNA sequence 
>CFC586 (CFC586Q) /CSM/CF/CFC5-D/CFC586Q.Seq.d/
ACAAAAAACATTTTCTAATAAAACAGATAAATTAAAAAATGACTACCTTTAACGAATATC
CATTCTTGGCTGAATTAGGCATTAAAGCTGAAAATAATGATGGAGTCTTCAATGGAAAAT
GGGGAGGTGCTGGTGAAATCATCAAATGTTTAAATCCAACAAATAATAAAGTTATTGCAA
CTGTTAGAGGTGCTGCACCAGAAGAATATGAAACATGTATTCAAGCAATGTTAGCAGCAA
AAGTAAAATGGGCATTAACACCAGCTCCAAGAAGAGGTGAAATTGTTAGATTAATTGGTC
AAGCCATGAGAGAAAAAATTGAACCATTATCAAAATTAATTTCATTAGAAATGGGTAAAA
TTTACATTGAAGCTAAAGGTGAAGTACAAGAATTCATTGACGTATGCGATTATGCAACTG
GTTTAAGTAGATCAATCAATGGTCAAGTGATGCCATCTGAACGTCCAAATCACATTTTAA
TGGAAACCTGGAATCCATTAGGTTTAGTTGGTATCATTACTGCTTTCAATTTCCCATGTG
CCGTACTTGGTTGGAATGCTGCAATCTCAATGATTTGCGGTAACGTCCAXXXXXXXXXXT
NAAGGTNTTNAANAAATAAAAAANCAAGGTGGTAAGGTCGTCATTGGTGGTAATAAACTC
GANATCAGTGGTGGAAACTTTGTTNAACCAACCGTCGTTGCCATTGAACATGATGCTCCA
ATNGTAAANACTGAACTNTTTGTTCCAATTNTNTACATAATGAAATTCAAAAATNTTGAC
GATGCTTTTGCCTGGAATAATGAAGTCCCNCAAGGTNTNTCATNTTCCCTNTTCNCAAAC
AATCAAAANAATATCTTCAAATGGCTTGGACCNACCGGATCTGACTGTGGNATAGTTAAC
GTAAATGNAGCTACNAACGGTGCTGAAATTGGTGGNGCCNTTGGAGGTGAAAAANAGACC
GGAGGTGGTANANAATCTGGCNCAGACAGCTGGAAACAGTATTGCCGTCGTAGNACTAAN
ACNATCAACCTATGGTAATACTATGCCNTTATCCCAAGGNATCNATTTTAACTAAAATTA
CCNAAAAAAAAAACCAAATGTAACTTACATAACATAAATAAAAGAATATT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
kkhflikqin*KMTTFNEYPFLAELGIKAENNDGVFNGKWGGAGEIIKCLNPTNNKVIAT
VRGAAPEEYETCIQAMLAAKVKWALTPAPRRGEIVRLIGQAMREKIEPLSKLISLEMGKI
YIEAKGEVQEFIDVCDYATGLSRSINGQVMPSERPNHILMETWNPLGLVGIITAFNFPCA
VLGWNAAISMICGNV---

---XGXXXIKXQGGKVVIGGNKLXISGGNFVXPTVVAIEHDAPXVXTELFVPIXYIMKFK
NXDDAFAWNNEVPQGXSXSLFXNNQXNIFKWLGPTGSDCGIVNVNXATNGAEIGGAXGGE
KXTGGGXXSGXDSWKQYCRRXTXTINLW*yyaxiprxxf*lklpkkktkcnlhninkri
Translated Amino Acid sequence (All Frames) 
Frame A:
tknif**nr*ikk*lpltnihswln*alklkimmessmengevlvkssnv*iqqiikllq
llevlhqknmkhvfkqc*qqk*ngh*hqlqeevklld*lvkp*ekklnhyqn*fh*kwvk
ftlklkvkyknsltyaimqlv*vdqsmvk*chlnvqitf*wkpgih*v*lvslllsishv
pylvgmlqsq*favts---

---xrxxxnkkxrw*grhww**trxqwwklcxtnrrch*t*csnxkx*txcsnxxhneiq
kx*rcfcle**spxrxxxfpxxkqskxylqmawtxri*lwxs*rkxsyxrc*nwwxxwr*
kxdrrwxxiwxrqletvlps*x*xxqpmvilcxypkxsiltkitxkknqm*lt*hk*kni

Frame B:
qktfsnktdklkndyl*risilg*irh*s*k**wslqwkmgrcw*nhqmfksnk**sycn
c*rcctrri*nmyssnvsskskmgintsskkr*nc*inwssherkn*tiikinfirng*n
lh*s*r*strih*rmrlcnwfk*inqwssdai*tskshfngnlesirfswyhycfqfpmc
rtwleccnlndlr*rp---

---XGXXXIKXQGGKVVIGGNKLXISGGNFVXPTVVAIEHDAPXVXTELFVPIXYIMKFK
NXDDAFAWNNEVPQGXSXSLFXNNQXNIFKWLGPTGSDCGIVNVNXATNGAEIGGAXGGE
KXTGGGXXSGXDSWKQYCRRXTXTINLW*yyaxiprxxf*lklpkkktkcnlhninkri

Frame C:
kkhflikqin*KMTTFNEYPFLAELGIKAENNDGVFNGKWGGAGEIIKCLNPTNNKVIAT
VRGAAPEEYETCIQAMLAAKVKWALTPAPRRGEIVRLIGQAMREKIEPLSKLISLEMGKI
YIEAKGEVQEFIDVCDYATGLSRSINGQVMPSERPNHILMETWNPLGLVGIITAFNFPCA
VLGWNAAISMICGNV---

---kvxxk*kxkvvrsslvvinsxsvvetlxnqpslplnmmlqx*xlnxlfqxxt**nsk
xltmllpgimksxkvxhxpxsqtikxissngldxpdltvx*lt*mxlxtvlklvxplevk
xrpevvxnlaqtagnsiavvxlxxstygntmplsqgixfn*nyxkkkpnvtyit*ikey
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFJ489 (CFJ489Q) /CSM/CF/CFJ4-D/CFJ489Q.Seq.d/                       1675   0.0
VFL522 (VFL522Q) /CSM/VF/VFL5-A/VFL522Q.Seq.d/                       1168   0.0
VFK658 (VFK658Q) /CSM/VF/VFK6-C/VFK658Q.Seq.d/                       1168   0.0
VFB844 (VFB844Q) /CSM/VF/VFB8-B/VFB844Q.Seq.d/                       1168   0.0
SFK705 (SFK705Q) /CSM/SF/SFK7-A/SFK705Q.Seq.d/                       1168   0.0
SFJ264 (SFJ264Q) /CSM/SF/SFJ2-C/SFJ264Q.Seq.d/                       1168   0.0
SFI562 (SFI562Q) /CSM/SF/SFI5-C/SFI562Q.Seq.d/                       1168   0.0
SFH477 (SFH477Q) /CSM/SF/SFH4-D/SFH477Q.Seq.d/                       1168   0.0
SFF818 (SFF818Q) /CSM/SF/SFF8-A/SFF818Q.Seq.d/                       1168   0.0
SFF292 (SFF292Q) /CSM/SF/SFF2-D/SFF292Q.Seq.d/                       1168   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117076|AC117076.3 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.   789   0.0    10
BU042811|BU042811.1 PP_LEa0014A23f Peach developing fruit mesocarp Prunus persica cDNA clone PP_LEa0014A23f, mRNA sequence.    74   8e-12  2
D88434|D88434.1 Malus domestica mRNA for protein abundantly expressed during apple fruit development, complete cds.    72   2e-08  2
AY034889|AY034889.1 Tortula ruralis aldehyde dehydrogenase ALDH2 (RNP129b) mRNA, complete cds.    46   5e-06  2
BJ550374|BJ550374.1 Hordeum vulgare subsp. spontaneum strain H602 cDNA clone:bah41j06, 5' mRNA sequence.    44   1e-05  4
BF200236|BF200236.1 WHE2254_E08_J16ZE Triticum monococcum vegetative apex cDNA library Triticum monococcum cDNA clone WHE2254_E08_J16, mRNA sequence.    52   2e-05  3
AJ615957|AJ615957.1 Triticum turgidum EST, clone 12415R.           52   5e-05  3
AJ614830|AJ614830.1 Triticum turgidum EST, clone 10801R.           52   6e-05  3
BQ806838|BQ806838.1 WHE3583_G06_M11ZS Wheat developing grains cDNA library Triticum aestivum cDNA clone WHE3583_G06_M11, mRNA sequence.    44   6e-05  4
CN011210|CN011210.1 WHE3881_D05_H09ZS Wheat Fusarium graminearum infected spike cDNA library Triticum aestivum cDNA clone WHE3881_D05_H09, mRNA sequence.    52   6e-05  3
dna update 2004. 5.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P83401) RecName: Full=Putative aldehyde dehydrogenase family 7 ...   375   e-102
BC044367_1(BC044367|pid:none) Danio rerio aldehyde dehydrogenase...   233   9e-60
EF678715_1(EF678715|pid:none) Picea sitchensis clone WS0295_M17 ...   231   4e-59
BT044648_1(BT044648|pid:none) Salmo salar clone ssal-rgf-001-326...   229   2e-58
AF323586_1(AF323586|pid:none) Oryza sativa aldehyde dehydrogenas...   224   3e-57
AY847462_1(AY847462|pid:none) Acanthopagrus schlegelii antiquiti...   223   9e-57
AY883858_1(AY883858|pid:none) Sterkiella histriomuscorum turgor ...   222   2e-56
AK297365_1(AK297365|pid:none) Homo sapiens cDNA FLJ56008 complet...   221   3e-56
(P49419) RecName: Full=Alpha-aminoadipic semialdehyde dehydrogen...   221   3e-56
BT067707_1(BT067707|pid:none) Zea mays full-length cDNA clone ZM...   221   5e-56
protein update 2009. 5.12
PSORT 

 psg: 0.78  gvh: 0.31  alm: 0.29  top: 0.77  tms: 0.07  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 52.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for CFC586 is nuc
5' end seq. ID CFC586F
5' end seq. 
>CFC586F.Seq
ACAAAAAACATTTTCTAATAAAACAGATAAATTAAAAAATGACTACCTTTAACGAATATC
CATTCTTGGCTGAATTAGGCATTAAAGCTGAAAATAATGATGGAGTCTTCAATGGAAAAT
GGGGAGGTGCTGGTGAAATCATCAAATGTTTAAATCCAACAAATAATAAAGTTATTGCAA
CTGTTAGAGGTGCTGCACCAGAAGAATATGAAACATGTATTCAAGCAATGTTAGCAGCAA
AAGTAAAATGGGCATTAACACCAGCTCCAAGAAGAGGTGAAATTGTTAGATTAATTGGTC
AAGCCATGAGAGAAAAAATTGAACCATTATCAAAATTAATTTCATTAGAAATGGGTAAAA
TTTACATTGAAGCTAAAGGTGAAGTACAAGAATTCATTGACGTATGCGATTATGCAACTG
GTTTAAGTAGATCAATCAATGGTCAAGTGATGCCATCTGAACGTCCAAATCACATTTTAA
TGGAAACCTGGAATCCATTAGGTTTAGTTGGTATCATTACTGCTTTCAATTTCCCATGTG
CCGTACTTGGTTGGAATGCTGCAATCTCAATGATTTGCGGTAACGTCCA----------
Length of 5' end seq. 589
3' end seq. ID CFC586Z
3' end seq. 
>CFC586Z.Seq
----------TNAAGGTNTTNAANAAATAAAAAANCAAGGTGGTAAGGTCGTCATTGGTG
GTAATAAACTCGANATCAGTGGTGGAAACTTTGTTNAACCAACCGTCGTTGCCATTGAAC
ATGATGCTCCAATNGTAAANACTGAACTNTTTGTTCCAATTNTNTACATAATGAAATTCA
AAAATNTTGACGATGCTTTTGCCTGGAATAATGAAGTCCCNCAAGGTNTNTCATNTTCCC
TNTTCNCAAACAATCAAAANAATATCTTCAAATGGCTTGGACCNACCGGATCTGACTGTG
GNATAGTTAACGTAAATGNAGCTACNAACGGTGCTGAAATTGGTGGNGCCNTTGGAGGTG
AAAAANAGACCGGAGGTGGTANANAATCTGGCNCAGACAGCTGGAAACAGTATTGCCGTC
GTAGNACTAANACNATCAACCTATGGTAATACTATGCCNTTATCCCAAGGNATCNATTTT
AACTAAAATTACCNAAAAAAAAAACCAAATGTAACTTACATAACATAAATAAAAGAATAT
T
Length of 3' end seq. 531
Connected seq. ID CFC586P
Connected seq. 
>CFC586P.Seq
ACAAAAAACATTTTCTAATAAAACAGATAAATTAAAAAATGACTACCTTTAACGAATATC
CATTCTTGGCTGAATTAGGCATTAAAGCTGAAAATAATGATGGAGTCTTCAATGGAAAAT
GGGGAGGTGCTGGTGAAATCATCAAATGTTTAAATCCAACAAATAATAAAGTTATTGCAA
CTGTTAGAGGTGCTGCACCAGAAGAATATGAAACATGTATTCAAGCAATGTTAGCAGCAA
AAGTAAAATGGGCATTAACACCAGCTCCAAGAAGAGGTGAAATTGTTAGATTAATTGGTC
AAGCCATGAGAGAAAAAATTGAACCATTATCAAAATTAATTTCATTAGAAATGGGTAAAA
TTTACATTGAAGCTAAAGGTGAAGTACAAGAATTCATTGACGTATGCGATTATGCAACTG
GTTTAAGTAGATCAATCAATGGTCAAGTGATGCCATCTGAACGTCCAAATCACATTTTAA
TGGAAACCTGGAATCCATTAGGTTTAGTTGGTATCATTACTGCTTTCAATTTCCCATGTG
CCGTACTTGGTTGGAATGCTGCAATCTCAATGATTTGCGGTAACGTCCA----------T
NAAGGTNTTNAANAAATAAAAAANCAAGGTGGTAAGGTCGTCATTGGTGGTAATAAACTC
GANATCAGTGGTGGAAACTTTGTTNAACCAACCGTCGTTGCCATTGAACATGATGCTCCA
ATNGTAAANACTGAACTNTTTGTTCCAATTNTNTACATAATGAAATTCAAAAATNTTGAC
GATGCTTTTGCCTGGAATAATGAAGTCCCNCAAGGTNTNTCATNTTCCCTNTTCNCAAAC
AATCAAAANAATATCTTCAAATGGCTTGGACCNACCGGATCTGACTGTGGNATAGTTAAC
GTAAATGNAGCTACNAACGGTGCTGAAATTGGTGGNGCCNTTGGAGGTGAAAAANAGACC
GGAGGTGGTANANAATCTGGCNCAGACAGCTGGAAACAGTATTGCCGTCGTAGNACTAAN
ACNATCAACCTATGGTAATACTATGCCNTTATCCCAAGGNATCNATTTTAACTAAAATTA
CCNAAAAAAAAAACCAAATGTAACTTACATAACATAAATAAAAGAATATT
Length of connected seq. 1120
Full length Seq ID -
Full length Seq. -
Length of full length seq. -