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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFC585
Library CF
(Link to library)
Clone ID CFC585
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16081-1
Original site URL
Representative seq. ID CFC585P
(Link to Original site)
Representative DNA sequence 
>CFC585 (CFC585Q) /CSM/CF/CFC5-D/CFC585Q.Seq.d/
AAACCTCTCTAAAACAAACAAATAATCTAAAAATGTCAGCACCAGAAGGACCATCAAAAT
GCACTTGGACTCCAAATACCACTGAAAACACTCCACATACCACCAGAAGAACTCCAAAGA
AATTAATTATGGATAATATTCTTGATAATATTGGTGGAACACCATTAGTTAGAGTTAATA
AAGTTTCATCAGATTTAGAATGTGAATTAGTTGCAAAATGTGAATTTTTCAATGCAGGTG
GTTCAGTTAAGGATCGTATTGGTCATCGTATGATTGTTGATGCAGAAGAGAGTGGTAGAA
TTAAGAAAGGAGATACATTAATTGAACCAACCTCTGGTAACACTGGTATTGGTTTAGCAT
TGACAGCAGCCATCAAAGGTTACAAAATGATCATTACACTCCCAGAGAAAATGTCACAAG
AGAAAGTTGATGTCTTGAAAGCATTGGGAGCAGAGATCATTCGTACACCAACTGAAGCAG
CATTTTGATGCACCAGAGTCACATATTGGTGTTGCAAAGAAATTXXXXXXXXXXATTANC
CGATTCCATTANAAACTATATGACCAAACATTTAAATGATGATTGGTTAGTCGACAATGG
TTTCGTTGATCCAGAATNCAAAACTAAAGATCAACAAGAAGAAGAGAAATATCATGGTGC
CNCCGTCAAANATTTAACACTCCCAAAACCAATCACCATNTNTGCCACCACCACTTGNGC
TGCCGCAGTTCAACTCCTCCAACAANATGGTTTCGATCAATTACCAGTCGTTAGTGAATC
AAAAAAAGTTTTAGGTCAACTCACTCTTGGTAACTTACTCTCACATATTGCCTCTAAAAA
AGCTGTCCCAACTGATGCTGNCAGTAAAGTTATGNTCCGTTTCNCTAAAAATGAAAAATA
TATTCCAATCACTCAATCAACTTCTTTAGCTACTCTTAGCAAATTTTTCGAAAATCATAG
CAGTGCTATCGNAACTGAAAATGATGAAATCATTTCAATTGNAACTAAAATTNATTTATT
AACTTATTTAATNAAATCTCAACAAAAAAATTAAAAATAAAATAAAATAAAAAAAAAAAA
AAG
sequence update 2001. 6. 1
Translated Amino Acid sequence 
kpl*nkqii*kcqhqkdhqnalglqiplktlhippeelqrn*lwiifliilvehh*leli
kfhqi*nvn*lqnvnfsmqvvqlrivlviv*llmqkrvvelrkeih*lnqplvtlvlv*h
*qqpskvtk*slhsqrkchkrklms*KHWEQRSFVHQLKQHFDAPESHIGVAKK---

---LXDSIXNYMTKHLNDDWLVDNGFVDPEXKTKDQQEEEKYHGAXVKXLTLPKPITXXA
TTTXAAAVQLLQQXGFDQLPVVSESKKVLGQLTLGNLLSHIASKKAVPTDAXSKVMXRFX
KNEKYIPITQSTSLATLSKFFENHSSAIXTENDEIISIXTKIXLLTYLXKSQQKN*k*nk
ikkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
kpl*nkqii*kcqhqkdhqnalglqiplktlhippeelqrn*lwiifliilvehh*leli
kfhqi*nvn*lqnvnfsmqvvqlrivlviv*llmqkrvvelrkeih*lnqplvtlvlv*h
*qqpskvtk*slhsqrkchkrklms*KHWEQRSFVHQLKQHFDAPESHIGVAKK---

---ixrfhxklydqtfk**lvsrqwfr*srxqn*rstrrreiswcxrqxfntpktnhhxc
hhhlxcrsstpptxwfrsitsr**ikksfrsthsw*ltltycl*kscpn*cxq*syxpfx
*k*kiysnhsinffsys*qifrks*qcyrn*k**nhfnxn*nxfinlfnxistkklkik*
nkkkkk

Frame B:
nlsktnk*sknvstrrtikmhldskyh*khstyhqknskeinyg*ys**ywwntis*s**
sfirfrm*isckm*ifqcrwfs*gsywssydc*crrew*n*erryin*tnlw*hwywfsi
dsshqrlqndhytprenvtres*clesigsrdhsytn*ssilmhqshilvlqrn---

---LXDSIXNYMTKHLNDDWLVDNGFVDPEXKTKDQQEEEKYHGAXVKXLTLPKPITXXA
TTTXAAAVQLLQQXGFDQLPVVSESKKVLGQLTLGNLLSHIASKKAVPTDAXSKVMXRFX
KNEKYIPITQSTSLATLSKFFENHSSAIXTENDEIISIXTKIXLLTYLXKSQQKN*k*nk
ikkkk

Frame C:
tslkqtnnlkmsapegpskctwtpnttentphttrrtpkklimdnildniggtplvrvnk
vssdlecelvakceffnaggsvkdrighrmivdaeesgrikkgdtlieptsgntgiglal
taaikgykmiitlpekmsqekvdvlkalgaeiirtpteaaf*ctrvtywcckei---

---xpiplxti*pni*mmig*stmvsliqnxklkinkkkrnimvppsxi*hsqnqspxxp
pplxlpqfnssnxmvsinyqslvnqkkf*vnsllvtyshilplkklsqlmlxvklxsvsl
kmknifqslnqll*lllanfskiiavlsxlkmmksfqlxlkxiy*li*xnlnkkiknkik
*kkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFC585 (CFC585Q) /CSM/CF/CFC5-D/CFC585Q.Seq.d/                       1871   0.0
VFO728 (VFO728Q) /CSM/VF/VFO7-B/VFO728Q.Seq.d/                       1023   0.0
VFN236 (VFN236Q) /CSM/VF/VFN2-B/VFN236Q.Seq.d/                       1023   0.0
VFK535 (VFK535Q) /CSM/VF/VFK5-B/VFK535Q.Seq.d/                       1023   0.0
SFI528 (SFI528Q) /CSM/SF/SFI5-B/SFI528Q.Seq.d/                       1023   0.0
SFH362 (SFH362Q) /CSM/SF/SFH3-C/SFH362Q.Seq.d/                       1023   0.0
SFH131 (SFH131Q) /CSM/SF/SFH1-B/SFH131Q.Seq.d/                       1023   0.0
SFD668 (SFD668Q) /CSM/SF/SFD6-C/SFD668Q.Seq.d/                       1023   0.0
VFD283 (VFD283Q) /CSM/VF/VFD2-D/VFD283Q.Seq.d/                       1015   0.0
CFD555 (CFD555Q) /CSM/CF/CFD5-C/CFD555Q.Seq.d/                       1015   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U27536|U27536.1 Dictyostelium discoideum cystathionine beta synthase mRNA, complete cds.   890   0.0    5
BP506707|BP506707.1 Hydra magnipapillata cDNA, clone:hmp_00432.    58   6e-13  4
AX536830|AX536830.1 Sequence 431 from Patent WO02064766.           54   6e-09  3
AB051616|AB051616.1 Pichia pastoris cbs mRNA for cystathionine beta-synthase, partial cds.    46   8e-07  4
BW368955|BW368955.1 Ciona intestinalis cDNA, clone:cima845p18, 5'end, single read.    64   1e-06  2
BW487770|BW487770.1 Ciona intestinalis cDNA, clone:cima028o15, 5'end, single read.    64   2e-06  2
BW448761|BW448761.1 Ciona intestinalis cDNA, clone:cijv012f21, 5'end, single read.    64   2e-06  2
BW366395|BW366395.1 Ciona intestinalis cDNA, clone:cima838g15, 5'end, single read.    64   5e-06  1
BW325828|BW325828.1 Ciona intestinalis cDNA, clone:cidg823a07, 5'end, single read.    64   5e-06  1
BW364541|BW364541.1 Ciona intestinalis cDNA, clone:cima833b24, 5'end, single read.    64   5e-06  1
dna update 2004. 5.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U27536_1(U27536|pid:none) Dictyostelium discoideum cystathionine...   254   2e-69
BC151539_1(BC151539|pid:none) Bos taurus cystathionine-beta-synt...   176   3e-44
AK077669_1(AK077669|pid:none) Mus musculus 8 days embryo whole b...   176   3e-44
(Q58H57) RecName: Full=Cystathionine beta-synthase;          EC=...   175   5e-44
(P32232) RecName: Full=Cystathionine beta-synthase;          EC=...   175   6e-44
D01098_1(D01098|pid:none) Rattus norvegicus mRNA for hemoprotein...   175   6e-44
M88346_1(M88346|pid:none) Rat cystathionine beta-synthase mRNA, ...   175   6e-44
AF424661_1(AF424661|pid:none) Phytophthora infestans clone MY-10...   175   8e-44
EU716632_1(EU716632|pid:none) Synthetic construct N-EGFP/cystath...   172   3e-43
EU315112_1(EU315112|pid:none) Oncorhynchus mykiss cystathionine-...   172   3e-43
protein update 2009. 5.12
PSORT 

 psg: 0.65  gvh: 0.24  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 32.0 %: nuclear
	 20.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for CFC585 is cyt
5' end seq. ID CFC585F
5' end seq. 
>CFC585F.Seq
AAACCTCTCTAAAACAAACAAATAATCTAAAAATGTCAGCACCAGAAGGACCATCAAAAT
GCACTTGGACTCCAAATACCACTGAAAACACTCCACATACCACCAGAAGAACTCCAAAGA
AATTAATTATGGATAATATTCTTGATAATATTGGTGGAACACCATTAGTTAGAGTTAATA
AAGTTTCATCAGATTTAGAATGTGAATTAGTTGCAAAATGTGAATTTTTCAATGCAGGTG
GTTCAGTTAAGGATCGTATTGGTCATCGTATGATTGTTGATGCAGAAGAGAGTGGTAGAA
TTAAGAAAGGAGATACATTAATTGAACCAACCTCTGGTAACACTGGTATTGGTTTAGCAT
TGACAGCAGCCATCAAAGGTTACAAAATGATCATTACACTCCCAGAGAAAATGTCACAAG
AGAAAGTTGATGTCTTGAAAGCATTGGGAGCAGAGATCATTCGTACACCAACTGAAGCAG
CATTTTGATGCACCAGAGTCACATATTGGTGTTGCAAAGAAATT----------
Length of 5' end seq. 524
3' end seq. ID CFC585Z
3' end seq. 
>CFC585Z.Seq
----------ATTANCCGATTCCATTANAAACTATATGACCAAACATTTAAATGATGATT
GGTTAGTCGACAATGGTTTCGTTGATCCAGAATNCAAAACTAAAGATCAACAAGAAGAAG
AGAAATATCATGGTGCCNCCGTCAAANATTTAACACTCCCAAAACCAATCACCATNTNTG
CCACCACCACTTGNGCTGCCGCAGTTCAACTCCTCCAACAANATGGTTTCGATCAATTAC
CAGTCGTTAGTGAATCAAAAAAAGTTTTAGGTCAACTCACTCTTGGTAACTTACTCTCAC
ATATTGCCTCTAAAAAAGCTGTCCCAACTGATGCTGNCAGTAAAGTTATGNTCCGTTTCN
CTAAAAATGAAAAATATATTCCAATCACTCAATCAACTTCTTTAGCTACTCTTAGCAAAT
TTTTCGAAAATCATAGCAGTGCTATCGNAACTGAAAATGATGAAATCATTTCAATTGNAA
CTAAAATTNATTTATTAACTTATTTAATNAAATCTCAACAAAAAAATTAAAAATAAAATA
AAATAAAAAAAAAAAAAAG
Length of 3' end seq. 549
Connected seq. ID CFC585P
Connected seq. 
>CFC585P.Seq
AAACCTCTCTAAAACAAACAAATAATCTAAAAATGTCAGCACCAGAAGGACCATCAAAAT
GCACTTGGACTCCAAATACCACTGAAAACACTCCACATACCACCAGAAGAACTCCAAAGA
AATTAATTATGGATAATATTCTTGATAATATTGGTGGAACACCATTAGTTAGAGTTAATA
AAGTTTCATCAGATTTAGAATGTGAATTAGTTGCAAAATGTGAATTTTTCAATGCAGGTG
GTTCAGTTAAGGATCGTATTGGTCATCGTATGATTGTTGATGCAGAAGAGAGTGGTAGAA
TTAAGAAAGGAGATACATTAATTGAACCAACCTCTGGTAACACTGGTATTGGTTTAGCAT
TGACAGCAGCCATCAAAGGTTACAAAATGATCATTACACTCCCAGAGAAAATGTCACAAG
AGAAAGTTGATGTCTTGAAAGCATTGGGAGCAGAGATCATTCGTACACCAACTGAAGCAG
CATTTTGATGCACCAGAGTCACATATTGGTGTTGCAAAGAAATT----------ATTANC
CGATTCCATTANAAACTATATGACCAAACATTTAAATGATGATTGGTTAGTCGACAATGG
TTTCGTTGATCCAGAATNCAAAACTAAAGATCAACAAGAAGAAGAGAAATATCATGGTGC
CNCCGTCAAANATTTAACACTCCCAAAACCAATCACCATNTNTGCCACCACCACTTGNGC
TGCCGCAGTTCAACTCCTCCAACAANATGGTTTCGATCAATTACCAGTCGTTAGTGAATC
AAAAAAAGTTTTAGGTCAACTCACTCTTGGTAACTTACTCTCACATATTGCCTCTAAAAA
AGCTGTCCCAACTGATGCTGNCAGTAAAGTTATGNTCCGTTTCNCTAAAAATGAAAAATA
TATTCCAATCACTCAATCAACTTCTTTAGCTACTCTTAGCAAATTTTTCGAAAATCATAG
CAGTGCTATCGNAACTGAAAATGATGAAATCATTTCAATTGNAACTAAAATTNATTTATT
AACTTATTTAATNAAATCTCAACAAAAAAATTAAAAATAAAATAAAATAAAAAAAAAAAA
AAG
Length of connected seq. 1073
Full length Seq ID -
Full length Seq. -
Length of full length seq. -