CFC583
Library CF
(Link to library)
Clone ID CFC583
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15309-1
Original site URL
Representative seq. ID CFC583Z
(Link to Original site)
Representative DNA sequence
>CFC583 (CFC583Q) /CSM/CF/CFC5-D/CFC583Q.Seq.d/
XXXXXXXXXXAAGAGCCATCCTAGAGGATCATTTAAAAAAAATGAAAGATCAATCAGATA
TTGAAATAAATGCTAATGAAAAAACATTTTGTTTTGATAATGAATCTTTTAATTATTTAG
CCGTTAAAAAATATAATGCTACTGCTGGTATTGAAACTAATTTTTCAGAAGATGATGAGT
TTGATTTTGGTAGAAGTTGGGATAGATCATCAAAAGAATTTAAAAGATTATTAGAAGAGA
TATCAAAAGTTCAACCACATGATGTTGCAAATACAATTTGTATAAATAATGCAAGAACAA
TGATTTCCAATTTAGCTCAACCAATGTCAACATGTATTTCAAATATTAATACCAACATTA
AATTAATGGAGCAACAATCTGAAAAGTTGAGGAACAATAGTATTGGTGATGAATCATTAT
TATACATTCCAGTATCTGTGGTGATAGCGGAAAAATTGGAAAACAGTCTATTGGTTTGCA
CAAAGAATGGATGCTCTAGTAATACCGATAATCCTTGTAACATTGATGTTGTTTCTCCAA
AATGGTATTCTTCACTTTATTGGTGTGATAATATTAATAAGATGGGAACTTGCAAAAAAT
GTTCAAACACTGGAGTACTTCCTTGTTTATGGTTTGATCA
sequence update 2001. 6. 1
Translated Amino Acid sequence
---RAILEDHLKKMKDQSDIEINANEKTFCFDNESFNYLAVKKYNATAGIETNFSEDDEF
DFGRSWDRSSKEFKRLLEEISKVQPHDVANTICINNARTMISNLAQPMSTCISNINTNIK
LMEQQSEKLRNNSIGDESLLYIPVSVVIAEKLENSLLVCTKNGCSSNTDNPCNIDVVSPK
WYSSLYWCDNINKMGTCKKCSNTGVLPCLWFD


Translated Amino Acid sequence (All Frames)
Frame A:
---RAILEDHLKKMKDQSDIEINANEKTFCFDNESFNYLAVKKYNATAGIETNFSEDDEF
DFGRSWDRSSKEFKRLLEEISKVQPHDVANTICINNARTMISNLAQPMSTCISNINTNIK
LMEQQSEKLRNNSIGDESLLYIPVSVVIAEKLENSLLVCTKNGCSSNTDNPCNIDVVSPK
WYSSLYWCDNINKMGTCKKCSNTGVLPCLWFD


Frame B:
---eps*rii*kk*kinqilk*mlmkkhfvlimnllii*plknimlllvlklifqkmmsl
ilvevgidhqknlkdy*kryqkfnhmmlqiqfv*imqeq*fpi*lnqcqhvfqiliptln
*wsnnlks*gtivlvmnhyytfqylw**rknwktvywfaqrmdalvipiilvtlmlflqn
gilhfigviilirwelaknvqtleyflvygli


Frame C:
---shprgsfkknersiry*nkc**knilf***if*lfsr*ki*cycwy*n*ffrr**v*
fw*klg*iikri*kiirrdiksstt*cckynlyk*cknndfqfsstnvnmyfky*yqh*i
ngati*kveeq*yw**iiiihssicgdsgkigkqsiglhkewml**yr*sl*h*ccfskm
vfftllv**y**dgnlqkmfkhwstslfmv*s


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFC583 (CFC583Q) /CSM/CF/CFC5-D/CFC583Q.Seq.d/ 1201 0.0
SFJ215 (SFJ215Q) /CSM/SF/SFJ2-A/SFJ215Q.Seq.d/ 1178 0.0
CFK372 (CFK372Q) /CSM/CF/CFK3-C/CFK372Q.Seq.d/ 1172 0.0
CFA139 (CFA139Q) /CSM/CF/CFA1-B/CFA139Q.Seq.d/ 1172 0.0
AFG762 (AFG762Q) /CSM/AF/AFG7-C/AFG762Q.Seq.d/ 1164 0.0
CHA124 (CHA124Q) /CSM/CH/CHA1-A/CHA124Q.Seq.d/ 1070 0.0
SFC514 (SFC514Q) /CSM/SF/SFC5-A/SFC514Q.Seq.d/ 728 0.0
SSL547 (SSL547Q) /CSM/SS/SSL5-B/SSL547Q.Seq.d/ 434 e-121
AFJ260 (AFJ260Q) /CSM/AF/AFJ2-C/AFJ260Q.Seq.d/ 327 1e-88
VHI440 (VHI440Q) /CSM/VH/VHI4-B/VHI440Q.Seq.d/ 323 2e-87

own update 2002. 9.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AE014817|AE014817.1 Plasmodium falciparum 3D7 chromosome 14 section 2 of 13 of the complete sequence. 36 5e-08 15
AC114263|AC114263.2 Dictyostelium discoideum chromosome 2 map 215673-367476 strain AX4, complete sequence. 62 7e-08 7
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence. 34 8e-06 11
AP003185|AP003185.1 Clostridium perfringens DNA, complete genome, section 1/10. 32 5e-05 11
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 36 2e-04 16
AF250284|AF250284.1 Amsacta moorei entomopoxvirus, complete genome. 34 5e-04 13
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 32 0.002 18
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence. 30 0.003 13
AP004172|AP004172.1 Mycoplasma penetrans HF-2 DNA, complete genome, section 3/5. 34 0.004 13
AB063521|AB063521.2 Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis DNA, complete genome, section 1/2. 34 0.006 13
dna update 2004. 5.28
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC114263_3(AC114263|pid:none) Dictyostelium discoideum chromosom... 121 2e-26
AB120174_1(AB120174|pid:none) Dictyostelium discoideum DD8-14 mR... 108 1e-22
AL935262_237(AL935262|pid:none) Lactobacillus plantarum strain W... 38 0.21
AY489910_1(AY489910|pid:none) HIV-1 isolate 99CM-AT0022 from Cam... 38 0.21
AB286860_8(AB286860|pid:none) Human immunodeficiency virus 1 pro... 37 0.35
AE014186_35(AE014186|pid:none) Plasmodium falciparum 3D7 chromos... 37 0.46
AE014186_149(AE014186|pid:none) Plasmodium falciparum 3D7 chromo... 37 0.46
AM910993_396(AM910993|pid:none) Plasmodium knowlesi strain H chr... 37 0.60
AC114263_52(AC114263|pid:none) Dictyostelium discoideum chromoso... 36 0.79
AF435978_1(AF435978|pid:none) Clostridium cellulovorans hypothet... 36 1.0
protein update 2009. 5.12
PSORT

psg: 0.42 gvh: 0.31 alm: 0.39 top: 0.53 tms: 0.00 mit: 0.32 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
28.0 %: cytoplasmic
12.0 %: mitochondrial
8.0 %: cytoskeletal
4.0 %: vesicles of secretory system

>> prediction for CFC583 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CFC583Z
3' end seq.
>CFC583Z.Seq
----------AAGAGCCATCCTAGAGGATCATTTAAAAAAAATGAAAGATCAATCAGATA
TTGAAATAAATGCTAATGAAAAAACATTTTGTTTTGATAATGAATCTTTTAATTATTTAG
CCGTTAAAAAATATAATGCTACTGCTGGTATTGAAACTAATTTTTCAGAAGATGATGAGT
TTGATTTTGGTAGAAGTTGGGATAGATCATCAAAAGAATTTAAAAGATTATTAGAAGAGA
TATCAAAAGTTCAACCACATGATGTTGCAAATACAATTTGTATAAATAATGCAAGAACAA
TGATTTCCAATTTAGCTCAACCAATGTCAACATGTATTTCAAATATTAATACCAACATTA
AATTAATGGAGCAACAATCTGAAAAGTTGAGGAACAATAGTATTGGTGATGAATCATTAT
TATACATTCCAGTATCTGTGGTGATAGCGGAAAAATTGGAAAACAGTCTATTGGTTTGCA
CAAAGAATGGATGCTCTAGTAATACCGATAATCCTTGTAACATTGATGTTGTTTCTCCAA
AATGGTATTCTTCACTTTATTGGTGTGATAATATTAATAAGATGGGAACTTGCAAAAAAT
GTTCAAACACTGGAGTACTTCCTTGTTTATGGTTTGATCA
Length of 3' end seq. 630
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -