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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFC580
Library CF
(Link to library)
Clone ID CFC580
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16560-1
Original site URL
Representative seq. ID CFC580P
(Link to Original site)
Representative DNA sequence 
>CFC580 (CFC580Q) /CSM/CF/CFC5-D/CFC580Q.Seq.d/
TGGCCTACTGGAAAAATTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATAT
ATTGTAACATTTCATAAAAAAAAAAAAAAAAAAAAAANTTAAAAAANCNCCTTTTTTGAA
AAAAAAAAXXXXXXXXXXGTATGCAATNTTNGTAAGACCCTCNCCGGTAAGACTATTACA
CTCGAAGTGAAGGTAGTGCCACCTTGAGAATGTAAAACCAAGATTCAAGATAAAGAAGGT
ATNCCACCAGATCANCAACGTCTCATTTTCGCTGGTAANCAATTAGAAGATGGTCGTACT
CTCTCTGATTACAATATCCAAAAAGAATCAACTCTCCACTTGGTCCTCAGATTAAGAGGT
GGTATGCAAATCTTTGTCAAAACATTAACTGGTAAGACCATCACTCTTGAAGTTGAGGGC
TCAGATAATATTGAAAATGTTAAAACAAAGATTCAAGACAAAGAAGGTATCCCACCAGAC
CAACAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTAC
AACATTCAAAAGGAATCCACTCTCCATTTAGTCCTCAGATTAAGAGGTGGTATGCAAATT
TTTGTCAAAACCCTCACTGGTAAGACTATTACACTCGAAGTTGAAGGTTCTGATAACATT
GAGAATGTTAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTCTC
ATTTTCGCCGGTAAACAATTGGAGGATGGTCGTACTCTCTCTGATTACAACATTCAAAAG
GAATCCACTCTCCATTTAGTTCTCAGATTAAGAGGTGGTATGCAAATTTTTGTAAAAACT
CTCACTGGTAAAACCATTACACTCGAAGTTGAAGGTAGTGACAACATTGAGAATGTAAAA
ACAAAAATTCAAGACAAAGAAGGTATCCCACC
sequence update 2001. 6. 1
Translated Amino Acid sequence 
gllekfllyky*ihilffyil*HFIKKKKKKKXKKXPFLKKK---

---VCNXXKTLXGKTITLEVKVVPP*ecktkiqdkegxppdxqrlifagxqledgrtlsd
yniqkestlhlvlrlrggmqifvktltgktitlevegsdnienvktkiqdkegippdqqr
lifagkqledgrtlsdyniqkestlhlvlrlrggmqifvktltgktitlevegsdnienv
kakiqdkegippdqqrlifagkqledgrtlsdyniqkestlhlvlrlrggmqifvktltg
ktitlevegsdnienvktkiqdkegip
Translated Amino Acid sequence (All Frames) 
Frame A:
wptgkifiiqilnsyfiflyivtfhkkkkkkkx*kxxffekk---

---VCNXXKTLXGKTITLEVKVVPP*ecktkiqdkegxppdxqrlifagxqledgrtlsd
yniqkestlhlvlrlrggmqifvktltgktitlevegsdnienvktkiqdkegippdqqr
lifagkqledgrtlsdyniqkestlhlvlrlrggmqifvktltgktitlevegsdnienv
kakiqdkegippdqqrlifagkqledgrtlsdyniqkestlhlvlrlrggmqifvktltg
ktitlevegsdnienvktkiqdkegip

Frame B:
gllekfllyky*ihilffyil*HFIKKKKKKKXKKXPFLKKK---

---yaxxvrpspvrllhsk*r*chlenvkprfkikkvxhqixnvsfslvxn*kmvvlsli
tiskknqlstwssd*evvckslskh*lvrpsllklraqiilkmlkqrfktkkvshqtnkd
*fslvnn*kmvvlslittfkrnplsi*ssd*evvckflskpslvrllhsklkvlitlrml
kpksktkkvfhqinnvsfspvnnwrmvvlslittfkrnplsi*fsd*evvckfl*klslv
kplhsklkvvttlrm*kqkfktkkvsh

Frame C:
aywknfyytnikfifyffiycnis*kkkkkkxlkxxlf*kkk---

---mqxx*dpxr*dyytrsegsatlrm*nqdsr*rryxtrsxtshfrw*xirrwsysl*l
qypkrinsplgpqikrwyanlcqninw*dhhs*s*glr*y*kc*nkdsrqrryptrptki
nfrw*tirrwsysl*lqhskgihspfspqikrwyanfcqnphw*dyytrs*rf**h*ec*
sqnprqrrystrsttshfrr*tiggwsysl*lqhskgihspfssqikrwyanfcknshw*
nhytrs*r**qh*ecknknsrqrrypt
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFC580 (CFC580Q) /CSM/CF/CFC5-D/CFC580Q.Seq.d/                       1538   0.0
SFD892 (SFD892Q) /CSM/SF/SFD8-D/SFD892Q.Seq.d/                       1455   0.0
CFF542 (CFF542Q) /CSM/CF/CFF5-B/CFF542Q.Seq.d/                       1453   0.0
CFC291 (CFC291Q) /CSM/CF/CFC2-D/CFC291Q.Seq.d/                       1453   0.0
CHD734 (CHD734Q) /CSM/CH/CHD7-B/CHD734Q.Seq.d/                       1445   0.0
SFD545 (SFD545Q) /CSM/SF/SFD5-B/SFD545Q.Seq.d/                       1443   0.0
CFG260 (CFG260Q) /CSM/CF/CFG2-C/CFG260Q.Seq.d/                       1443   0.0
CFA741 (CFA741Q) /CSM/CF/CFA7-B/CFA741Q.Seq.d/                       1443   0.0
CFC829 (CFC829Q) /CSM/CF/CFC8-B/CFC829Q.Seq.d/                       1441   0.0
CFF858 (CFF858Q) /CSM/CF/CFF8-C/CFF858Q.Seq.d/                       1439   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

M19491|M19491.1 Slime mold (D.discoideum) ubiquitin p229C/pLK229 gene, complete cds.  1392   0.0    3
M23748|M23748.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB19.  1376   0.0    3
M19666|M19666.1 Slime mold (D.discoideum) ubiquitin gene, 3' end, clone p229C.  1376   0.0    3
M23753|M23753.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB14.   805   0.0    3
M23754|M23754.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB2.   710   0.0    2
M23752|M23752.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB17.   692   0.0    3
M23751|M23751.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB18.   692   0.0    3
M19492|M19492.1 Slime mold (D.discoideum) ubiquitin lambda-229 gene, complete cds.   660   0.0    2
Z54197|Z54197.1 C.albicans UBI4 gene encoding polyubiquitin.      170   e-111  4
BJ528884|BJ528884.1 Oryzias latipes cDNA clone:MF01SSB034A18, 5' end single read.   192   e-107  4
dna update 2004. 5.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A27806(A27806) polyubiquitin 5 (clone pLK229) - slime mold (Dict...   473   e-132
M19666_1(M19666|pid:none) Slime mold (D.discoideum) ubiquitin ge...   473   e-132
B34080(B34080)polyubiquitin 5 (clone DCUB19) - slime mold (Dicty...   473   e-132
M23754_1(M23754|pid:none) D.discoideum ubiquitin mRNA, complete ...   467   e-130
AY957885_1(AY957885|pid:none) Gracilaria lemaneiformis polyubiqu...   458   e-127
S53719(S53719;S73107;S71069)polyubiquitin 6 - red alga (Gracilar...   456   e-127
AB021974_1(AB021974|pid:none) Bombyx mori UBI3 mRNA for polyubiq...   455   e-126
Y12081_1(Y12081|pid:none) Suberites domuncula mRNA for polyubiqu...   455   e-126
S32020(S32020) polyubiquitin 6 - Geodia cydonium  &X70917_1(X709...   455   e-126
T16144(T16144) ubiquitin - Caenorhabditis elegans  &U23172_1(U23...   455   e-126
protein update 2009. 5.12
PSORT 

 psg: 0.55  gvh: 0.31  alm: 0.55  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.64  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: nuclear
	 12.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for CFC580 is nuc
5' end seq. ID CFC580F
5' end seq. 
>CFC580F.Seq
TGGCCTACTGGAAAAATTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATAT
ATTGTAACATTTCATAAAAAAAAAAAAAAAAAAAAAANTTAAAAAANCNCCTTTTTTGAA
AAAAAAAA----------
Length of 5' end seq. 128
3' end seq. ID CFC580Z
3' end seq. 
>CFC580Z.Seq
----------GTATGCAATNTTNGTAAGACCCTCNCCGGTAAGACTATTACACTCGAAGT
GAAGGTAGTGCCACCTTGAGAATGTAAAACCAAGATTCAAGATAAAGAAGGTATNCCACC
AGATCANCAACGTCTCATTTTCGCTGGTAANCAATTAGAAGATGGTCGTACTCTCTCTGA
TTACAATATCCAAAAAGAATCAACTCTCCACTTGGTCCTCAGATTAAGAGGTGGTATGCA
AATCTTTGTCAAAACATTAACTGGTAAGACCATCACTCTTGAAGTTGAGGGCTCAGATAA
TATTGAAAATGTTAAAACAAAGATTCAAGACAAAGAAGGTATCCCACCAGACCAACAAAG
ATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAACATTCA
AAAGGAATCCACTCTCCATTTAGTCCTCAGATTAAGAGGTGGTATGCAAATTTTTGTCAA
AACCCTCACTGGTAAGACTATTACACTCGAAGTTGAAGGTTCTGATAACATTGAGAATGT
TAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTCGC
CGGTAAACAATTGGAGGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCAC
TCTCCATTTAGTTCTCAGATTAAGAGGTGGTATGCAAATTTTTGTAAAAACTCTCACTGG
TAAAACCATTACACTCGAAGTTGAAGGTAGTGACAACATTGAGAATGTAAAAACAAAAAT
TCAAGACAAAGAAGGTATCCCACC
Length of 3' end seq. 794
Connected seq. ID CFC580P
Connected seq. 
>CFC580P.Seq
TGGCCTACTGGAAAAATTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATAT
ATTGTAACATTTCATAAAAAAAAAAAAAAAAAAAAAANTTAAAAAANCNCCTTTTTTGAA
AAAAAAAA----------GTATGCAATNTTNGTAAGACCCTCNCCGGTAAGACTATTACA
CTCGAAGTGAAGGTAGTGCCACCTTGAGAATGTAAAACCAAGATTCAAGATAAAGAAGGT
ATNCCACCAGATCANCAACGTCTCATTTTCGCTGGTAANCAATTAGAAGATGGTCGTACT
CTCTCTGATTACAATATCCAAAAAGAATCAACTCTCCACTTGGTCCTCAGATTAAGAGGT
GGTATGCAAATCTTTGTCAAAACATTAACTGGTAAGACCATCACTCTTGAAGTTGAGGGC
TCAGATAATATTGAAAATGTTAAAACAAAGATTCAAGACAAAGAAGGTATCCCACCAGAC
CAACAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTAC
AACATTCAAAAGGAATCCACTCTCCATTTAGTCCTCAGATTAAGAGGTGGTATGCAAATT
TTTGTCAAAACCCTCACTGGTAAGACTATTACACTCGAAGTTGAAGGTTCTGATAACATT
GAGAATGTTAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTCTC
ATTTTCGCCGGTAAACAATTGGAGGATGGTCGTACTCTCTCTGATTACAACATTCAAAAG
GAATCCACTCTCCATTTAGTTCTCAGATTAAGAGGTGGTATGCAAATTTTTGTAAAAACT
CTCACTGGTAAAACCATTACACTCGAAGTTGAAGGTAGTGACAACATTGAGAATGTAAAA
ACAAAAATTCAAGACAAAGAAGGTATCCCACC
Length of connected seq. 922
Full length Seq ID -
Full length Seq. -
Length of full length seq. -